Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Forward (+)

32662973 .. 32663555

Gene Structure 583 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024163

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGCAGACTGTAAGCGAATGGCGGTCGTCGACTCCTCCGCCGCCGCTGACTACTCTCTTTTCAAGCTCCTTCGTTCCACGAGTTCTTACTCCGACGAGCACTCTCCACCTTCTTCCTCTTGCTGCTCCAGCAATGAGCTCAACGACGTCGTTCTCGTTTCATTCACTTCAAATTTCTTACTCTGTCTCATCAATTTCTCGAACCGAAACATTAATCGTCTCTGTTCATCCTATTGCTCTATTCTAACAATTTTCGGATCGTCAAAAATCAACAGAGAAAAGAAGCAGTTGAGCGAGTTGTGCCTGGAGAACTCTAATGAGACGGAGCCGCCGGAGGTGAGCAAAGCGCCTCTAAGTGACGAGATAGAAGAGTTCTTCACCACGGCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

131

Amino Acids

14.4

Weight (kDa)

4.69

Isoelectric Point (pI)

58.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	1 cut(s)	30
AciI	CCGC	5 cut(s)	23, 39, 42, 45, 329
AclWI	GGATC	1 cut(s)	265
AcoI	YGGCCR	1 cut(s)	384
AcsI	RAATTY	1 cut(s)	172
AcyI	GRCGYC	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	64, 171
AjnI	CCWGG	1 cut(s)	303
AluBI	AGCT	2 cut(s)	67, 139
AluI	AGCT	2 cut(s)	67, 139
Alw21I	GWGCWC	2 cut(s)	102, 141
Alw26I	GTCTC	3 cut(s)	191, 224, 314
AlwI	GGATC	1 cut(s)	265
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	1 cut(s)	123
ApoI	RAATTY	1 cut(s)	172
AseI	ATTAAT	1 cut(s)	213
AspLEI	GCGC	1 cut(s)	349
AsuHPI	GGTGA	2 cut(s)	349, 370
BanII	GRGCYC	1 cut(s)	141
BauI	CACGAG	1 cut(s)	79
Bbv12I	GWGCWC	2 cut(s)	102, 141
BbvI	GCAGC	1 cut(s)	110
BciT130I	CCWGG	1 cut(s)	305
BcoDI	GTCTC	3 cut(s)	191, 224, 314
BfoI	RGCGCY	1 cut(s)	350
BisI	GCNGC	4 cut(s)	42, 45, 124, 329
BlsI	GCNGC	4 cut(s)	43, 46, 125, 330
Bme1390I	CCNGG	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	327
BmrFI	CCNGG	1 cut(s)	305
BpmI	CTGGAG	2 cut(s)	112, 326
BsaHI	GRCGYC	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	381
Bse3DI	GCAATG	1 cut(s)	139
BseBI	CCWGG	1 cut(s)	305
BseDI	CCNNGG	1 cut(s)	381
BseGI	GGATG	1 cut(s)	227
BseMI	GCAATG	1 cut(s)	139
BseRI	GAGGAG	1 cut(s)	25
BseX3I	CGGCCG	1 cut(s)	384
BseXI	GCAGC	1 cut(s)	110
Bsh1285I	CGRYCG	2 cut(s)	27, 387
BshFI	GGCC	1 cut(s)	386
BsiEI	CGRYCG	2 cut(s)	27, 387
BsiHKAI	GWGCWC	2 cut(s)	102, 141
BsiSI	CCGG	1 cut(s)	332
BsmAI	GTCTC	3 cut(s)	191, 224, 314
BsmBI	CGTCTC	2 cut(s)	224, 314
BsnI	GGCC	1 cut(s)	386
Bsp1286I	GDGCHC	2 cut(s)	102, 141
Bsp143I	GATC	1 cut(s)	257
BspACI	CCGC	5 cut(s)	23, 39, 42, 45, 329
BspANI	GGCC	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	1 cut(s)	265
BsrDI	GCAATG	1 cut(s)	139
BssECI	CCNNGG	1 cut(s)	381
BssMI	GATC	1 cut(s)	257
BssNI	GRCGYC	1 cut(s)	147
BssSI	CACGAG	1 cut(s)	79
Bst2BI	CACGAG	1 cut(s)	79
Bst2UI	CCWGG	1 cut(s)	305
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	147
BstDEI	CTNAG	1 cut(s)	353
BstDSI	CCRYGG	1 cut(s)	381
BstF5I	GGATG	1 cut(s)	227
BstH2I	RGCGCY	1 cut(s)	350
BstHHI	GCGC	1 cut(s)	349
BstKTI	GATC	1 cut(s)	260
BstMAI	GTCTC	3 cut(s)	191, 224, 314
BstMBI	GATC	1 cut(s)	257
BstMCI	CGRYCG	2 cut(s)	27, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 300
BstNI	CCWGG	1 cut(s)	305
BstSCI	CCNGG	1 cut(s)	303
BstV1I	GCAGC	1 cut(s)	110
BstZI	CGGCCG	1 cut(s)	384
BsuRI	GGCC	1 cut(s)	386
BtgI	CCRYGG	1 cut(s)	381
BtsCI	GGATG	1 cut(s)	227
CfoI	GCGC	1 cut(s)	349
CviJI	RGCY	4 cut(s)	67, 139, 328, 386
CviKI_1	RGCY	4 cut(s)	67, 139, 328, 386
DdeI	CTNAG	1 cut(s)	353
DpnI	GATC	1 cut(s)	259
DpnII	GATC	1 cut(s)	257
EaeI	YGGCCR	1 cut(s)	384
EagI	CGGCCG	1 cut(s)	384
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
EciI	GGCGGA	1 cut(s)	28
Ecl136II	GAGCTC	1 cut(s)	139
EclXI	CGGCCG	1 cut(s)	384
Eco24I	GRGCYC	1 cut(s)	141
Eco52I	CGGCCG	1 cut(s)	384
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	141
Esp3I	CGTCTC	2 cut(s)	224, 314
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	4 cut(s)	42, 45, 124, 329
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	4 cut(s)	42, 45, 124, 329
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	4 cut(s)	42, 45, 124, 329
GsuI	CTGGAG	2 cut(s)	112, 326
HaeII	RGCGCY	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	386
HapII	CCGG	1 cut(s)	332
HhaI	GCGC	1 cut(s)	349
Hin1I	GRCGYC	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	1 cut(s)	32
HpaII	CCGG	1 cut(s)	332
HphI	GGTGA	2 cut(s)	349, 370
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	2 cut(s)	94, 257
Hpy188III	TCNNGA	1 cut(s)	199
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	4 cut(s)	32, 98, 149, 152
HpyAV	CCTTC	2 cut(s)	80, 120
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	147
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 300
HpyF3I	CTNAG	1 cut(s)	353
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	1 cut(s)	147
HspAI	GCGC	1 cut(s)	347
Kzo9I	GATC	1 cut(s)	257
LmnI	GCTCC	3 cut(s)	72, 131, 325
LpnPI	CCDG	4 cut(s)	142, 290, 317, 345
Lsp1109I	GCAGC	1 cut(s)	110
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	1 cut(s)	356
MalI	GATC	1 cut(s)	259
MboI	GATC	1 cut(s)	257
MboII	GAAGA	3 cut(s)	105, 367, 380
MhlI	GDGCHC	2 cut(s)	102, 141
MluCI	AATT	3 cut(s)	172, 193, 249
MlyI	GAGTC	1 cut(s)	26
MmeI	TCCRAC	1 cut(s)	117
MnlI	CCTC	4 cut(s)	46, 127, 328, 360
MseI	TTAA	1 cut(s)	213
MspA1I	CMGCKG	1 cut(s)	47
MspI	CCGG	1 cut(s)	332
MspR9I	CCNGG	1 cut(s)	305
MvaI	CCWGG	1 cut(s)	305
MwoI	GCNNNNNNNGC	2 cut(s)	129, 300
NdeII	GATC	1 cut(s)	257
NlaIV	GGNNCC	1 cut(s)	327
NmuCI	GTSAC	1 cut(s)	356
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PkrI	GCNGC	4 cut(s)	43, 46, 125, 330
PleI	GAGTC	1 cut(s)	26
PpsI	GAGTC	1 cut(s)	26
PshBI	ATTAAT	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	141
Psp6I	CCWGG	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	303
PspN4I	GGNNCC	1 cut(s)	327
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	4 cut(s)	42, 45, 124, 329
Sau3AI	GATC	1 cut(s)	257
SchI	GAGTC	1 cut(s)	26
ScrFI	CCNGG	1 cut(s)	305
SduI	GDGCHC	2 cut(s)	102, 141
SetI	ASST	5 cut(s)	69, 112, 141, 150, 339
Sse9I	AATT	3 cut(s)	172, 193, 249
SsiI	CCGC	5 cut(s)	23, 39, 42, 45, 329
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	303
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	2 cut(s)	30, 200
TasI	AATT	3 cut(s)	172, 193, 249
TauI	GCSGC	3 cut(s)	44, 47, 331
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	1 cut(s)	123
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	2 cut(s)	150, 216
TspGWI	ACGGA	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	1 cut(s)	172
XmiI	GTMKAC	1 cut(s)	30
ZraI	GACGTC	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.