Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000178

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Reverse (-)

3276 .. 4626

Gene Structure 1351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_178G00437200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCGGACTGTAAGCGAATGTCGGTCGTCGACTCTTCCACCGCCTCCGCAGCCGACGAAGACCACTCTCCGTCCAAGAGAAGGAAAACCCTCACTGCTTCTTCGCCTCCGGAGACAATGCTTCATCATCATCATCAGCTCGGCGATTCTCGCAGTTTCAAGCTCCTTCGTTCCACGAGTTCCTGCTCCGACGAGCACTCTCCTCCTTCTTCCTCTTGCTGCTCCAGCAATGAGCTCAACGACGTCGTTATCGTCAGCTCGCCGCTTCTGGATCTGGAGGTGAATCTCAATTCCTTAAGCTCCGAGCTTCAGAATTTTGTTTGTGTGCGAAAACGGCTGGAAAATGAAGCATTTCATGACAGAGAAACGACGCCGTCGAGCGAGCTGTGCCTGGATAACTCCGACGATATAGAGTCGCCGGCGGTGAGCAAAGTGCCTCCGAGTGACGAGATCGAAGAGTTCTTCGCCACGGCAGAGAAGTACGAGCAAAAGCGCTTCGCAGAAAAGTACAACTTTGATATCGTGAAGGAGGCGCCGTTGGAGGGCCGGTACCAGTGGGTTCGTTTGAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

191

Amino Acids

21.45

Weight (kDa)

5.08

Isoelectric Point (pI)

72.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	146 - 189	3.9e-18	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
Acc65I	GGTACC	1 cut(s)	549
AccB1I	GGYRCC	2 cut(s)	532, 549
AccI	GTMKAC	1 cut(s)	30
AccIII	TCCGGA	1 cut(s)	109
AciI	CCGC	5 cut(s)	5, 42, 48, 263, 422
AclWI	GGATC	1 cut(s)	279
AcsI	RAATTY	1 cut(s)	313
AcuI	CTGAAG	1 cut(s)	293
AcyI	GRCGYC	3 cut(s)	243, 371, 533
AfaI	GTAC	3 cut(s)	482, 509, 551
AfeI	AGCGCT	1 cut(s)	494
AfiI	CCNNNNNNNGG	2 cut(s)	81, 542
AflII	CTTAAG	1 cut(s)	295
AgsI	TTSAA	2 cut(s)	160, 568
AjnI	CCWGG	1 cut(s)	390
AluBI	AGCT	7 cut(s)	139, 163, 235, 258, 300, 307, 385
AluI	AGCT	7 cut(s)	139, 163, 235, 258, 300, 307, 385
Alw21I	GWGCWC	2 cut(s)	198, 237
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	279
Aor13HI	TCCGGA	1 cut(s)	109
Aor51HI	AGCGCT	1 cut(s)	494
AoxI	GGCC	1 cut(s)	544
ApeKI	GCWGC	2 cut(s)	50, 219
ApoI	RAATTY	1 cut(s)	313
Asp700I	GAANNNNTTC	1 cut(s)	351
Asp718I	GGTACC	1 cut(s)	549
AspLEI	GCGC	2 cut(s)	495, 535
AspS9I	GGNCC	1 cut(s)	544
AsuHPI	GGTGA	2 cut(s)	292, 436
BanI	GGYRCC	2 cut(s)	532, 549
BanII	GRGCYC	1 cut(s)	237
BauI	CACGAG	1 cut(s)	175
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	198, 237
BbvI	GCAGC	2 cut(s)	62, 206
BceAI	ACGGC	4 cut(s)	350, 358, 486, 520
BciT130I	CCWGG	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	107
BfoI	RGCGCY	2 cut(s)	496, 536
BfrI	CTTAAG	1 cut(s)	295
BisI	GCNGC	3 cut(s)	51, 220, 263
BlsI	GCNGC	3 cut(s)	52, 221, 264
Bme1390I	CCNGG	1 cut(s)	392
BmgT120I	GGNCC	1 cut(s)	544
BmiI	GGNNCC	2 cut(s)	534, 551
BmrFI	CCNGG	1 cut(s)	392
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	2 cut(s)	208, 296
BsaHI	GRCGYC	3 cut(s)	243, 371, 533
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	4 cut(s)	521, 533, 551, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 542
Bse118I	RCCGGY	2 cut(s)	418, 546
Bse1I	ACTGG	1 cut(s)	553
Bse3DI	GCAATG	1 cut(s)	235
BseAI	TCCGGA	1 cut(s)	109
BseBI	CCWGG	1 cut(s)	392
BseDI	CCNNGG	1 cut(s)	468
BseLI	CCNNNNNNNGG	2 cut(s)	81, 542
BseMI	GCAATG	1 cut(s)	235
BseNI	ACTGG	1 cut(s)	553
BseRI	GAGGAG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	62, 206
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	1 cut(s)	546
BshNI	GGYRCC	2 cut(s)	532, 549
BsiEI	CGRYCG	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	198, 237
BsiSI	CCGG	3 cut(s)	110, 419, 547
BslI	CCNNNNNNNGG	2 cut(s)	81, 542
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	546
Bsp1286I	GDGCHC	2 cut(s)	198, 237
Bsp13I	TCCGGA	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	271, 450
BspACI	CCGC	5 cut(s)	5, 42, 48, 263, 422
BspANI	GGCC	1 cut(s)	546
BspEI	TCCGGA	1 cut(s)	109
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	534, 551
BspPI	GGATC	1 cut(s)	279
BspT107I	GGYRCC	2 cut(s)	532, 549
BspTI	CTTAAG	1 cut(s)	295
BsrDI	GCAATG	1 cut(s)	235
BsrFI	RCCGGY	2 cut(s)	418, 546
BsrI	ACTGG	1 cut(s)	553
BssAI	RCCGGY	2 cut(s)	418, 546
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	2 cut(s)	271, 450
BssNI	GRCGYC	3 cut(s)	243, 371, 533
BssSI	CACGAG	1 cut(s)	175
Bst2BI	CACGAG	1 cut(s)	175
Bst2UI	CCWGG	1 cut(s)	392
Bst4CI	ACNGT	1 cut(s)	11
Bst6I	CTCTTC	2 cut(s)	40, 450
BstACI	GRCGYC	3 cut(s)	243, 371, 533
BstAFI	CTTAAG	1 cut(s)	295
BstC8I	GCNNGC	3 cut(s)	260, 383, 420
BstDSI	CCRYGG	1 cut(s)	468
BstH2I	RGCGCY	2 cut(s)	496, 536
BstHHI	GCGC	2 cut(s)	495, 535
BstKTI	GATC	2 cut(s)	274, 453
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	271, 450
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 150, 225, 334, 387
BstNI	CCWGG	1 cut(s)	392
BstSCI	CCNGG	1 cut(s)	390
BstV1I	GCAGC	2 cut(s)	62, 206
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BsuRI	GGCC	1 cut(s)	546
BtgI	CCRYGG	1 cut(s)	468
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	2 cut(s)	93, 560
Cac8I	GCNNGC	3 cut(s)	260, 383, 420
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	2 cut(s)	495, 535
Cfr10I	RCCGGY	2 cut(s)	418, 546
Cfr13I	GGNCC	1 cut(s)	544
CseI	GACGC	1 cut(s)	379
Csp6I	GTAC	3 cut(s)	481, 508, 550
CviAII	CATG	2 cut(s)	356, 573
CviQI	GTAC	3 cut(s)	481, 508, 550
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	2 cut(s)	273, 452
DpnII	GATC	2 cut(s)	271, 450
Eam1104I	CTCTTC	2 cut(s)	40, 450
EarI	CTCTTC	2 cut(s)	40, 450
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	235
Eco24I	GRGCYC	1 cut(s)	237
Eco32I	GATATC	1 cut(s)	520
Eco47III	AGCGCT	1 cut(s)	494
Eco53kI	GAGCTC	1 cut(s)	235
Eco57I	CTGAAG	1 cut(s)	293
EcoICRI	GAGCTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	390
EcoRV	GATATC	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	237
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
FaeI	CATG	2 cut(s)	359, 576
FaiI	YATR	3 cut(s)	357, 410, 574
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FatI	CATG	2 cut(s)	355, 572
FblI	GTMKAC	1 cut(s)	30
Fnu4HI	GCNGC	3 cut(s)	51, 220, 263
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	51, 220, 263
GlaI	GCGC	2 cut(s)	494, 534
GluI	GCNGC	3 cut(s)	51, 220, 263
GsuI	CTGGAG	2 cut(s)	208, 296
HaeII	RGCGCY	2 cut(s)	496, 536
HaeIII	GGCC	1 cut(s)	546
HapII	CCGG	3 cut(s)	110, 419, 547
HgaI	GACGC	1 cut(s)	379
HhaI	GCGC	2 cut(s)	495, 535
Hin1I	GRCGYC	3 cut(s)	243, 371, 533
Hin1II	CATG	2 cut(s)	359, 576
Hin6I	GCGC	2 cut(s)	493, 533
HinP1I	GCGC	2 cut(s)	493, 533
HincII	GTYRAC	1 cut(s)	31
HindII	GTYRAC	1 cut(s)	31
HinfI	GANTC	4 cut(s)	32, 146, 283, 413
HpaII	CCGG	3 cut(s)	110, 419, 547
HphI	GGTGA	2 cut(s)	292, 436
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	5 cut(s)	190, 304, 312, 403, 441
Hpy188III	TCNNGA	5 cut(s)	110, 269, 275, 356, 523
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	8 cut(s)	32, 59, 194, 245, 248, 373, 379, 407
HpyAV	CCTTC	4 cut(s)	75, 176, 216, 520
HpyCH4III	ACNGT	1 cut(s)	11
HpyCH4IV	ACGT	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 150, 225, 334, 387
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	3 cut(s)	243, 371, 533
Hsp92II	CATG	2 cut(s)	359, 576
HspAI	GCGC	2 cut(s)	493, 533
KasI	GGCGCC	1 cut(s)	532
Kpn2I	TCCGGA	1 cut(s)	109
KpnI	GGTACC	1 cut(s)	553
KroI	GCCGGC	1 cut(s)	418
KroNI	GCCGGC	1 cut(s)	420
Kzo9I	GATC	2 cut(s)	271, 450
LmnI	GCTCC	4 cut(s)	168, 191, 227, 305
Lsp1109I	GCAGC	2 cut(s)	62, 206
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	2 cut(s)	273, 452
MboI	GATC	2 cut(s)	271, 450
MboII	GAAGA	6 cut(s)	27, 71, 93, 201, 454, 467
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	198, 237
MluCI	AATT	2 cut(s)	289, 313
Mly113I	GGCGCC	1 cut(s)	533
MlyI	GAGTC	2 cut(s)	26, 422
MmeI	TCCRAC	3 cut(s)	213, 426, 519
MnlI	CCTC	9 cut(s)	55, 101, 117, 213, 223, 271, 447, 523, 535
MreI	CGCCGGCG	1 cut(s)	418
MroI	TCCGGA	1 cut(s)	109
MroNI	GCCGGC	1 cut(s)	418
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	1 cut(s)	296
MspCI	CTTAAG	1 cut(s)	295
MspI	CCGG	3 cut(s)	110, 419, 547
MspR9I	CCNGG	1 cut(s)	392
MvaI	CCWGG	1 cut(s)	392
MwoI	GCNNNNNNNGC	5 cut(s)	50, 150, 225, 334, 387
NaeI	GCCGGC	1 cut(s)	420
NarI	GGCGCC	1 cut(s)	533
NdeII	GATC	2 cut(s)	271, 450
NgoMIV	GCCGGC	1 cut(s)	418
NlaIII	CATG	2 cut(s)	359, 576
NlaIV	GGNNCC	2 cut(s)	534, 551
NmeAIII	GCCGAG	1 cut(s)	120
NmuCI	GTSAC	1 cut(s)	443
PagI	TCATGA	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	2 cut(s)	249, 374
PdiI	GCCGGC	1 cut(s)	420
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	2 cut(s)	146, 283
PflFI	GACNNNGTC	1 cut(s)	373
PkrI	GCNGC	3 cut(s)	52, 221, 264
PleI	GAGTC	2 cut(s)	26, 421
PluTI	GGCGCC	1 cut(s)	536
PpsI	GAGTC	2 cut(s)	26, 421
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	534, 551
PspPI	GGNCC	1 cut(s)	544
PsuI	RGATCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	373
RsaI	GTAC	3 cut(s)	482, 509, 551
RsaNI	GTAC	3 cut(s)	481, 508, 550
SacI	GAGCTC	1 cut(s)	237
SalI	GTCGAC	1 cut(s)	29
SaqAI	TTAA	1 cut(s)	296
SatI	GCNGC	3 cut(s)	51, 220, 263
Sau3AI	GATC	2 cut(s)	271, 450
Sau96I	GGNCC	1 cut(s)	544
SchI	GAGTC	2 cut(s)	26, 422
ScrFI	CCNGG	1 cut(s)	392
SduI	GDGCHC	2 cut(s)	198, 237
SetI	ASST	9 cut(s)	141, 165, 237, 246, 260, 282, 302, 309, 387
SfoI	GGCGCC	1 cut(s)	534
SgrAI	CRCCGGYG	1 cut(s)	418
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
Sse9I	AATT	2 cut(s)	289, 313
SsiI	CCGC	5 cut(s)	5, 42, 48, 263, 422
SspDI	GGCGCC	1 cut(s)	532
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	390
TaaI	ACNGT	1 cut(s)	11
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	30, 377, 453
TaqII	GACCGA	1 cut(s)	13
TasI	AATT	2 cut(s)	289, 313
TatI	WGTACW	1 cut(s)	507
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	2 cut(s)	146, 283
Tru1I	TTAA	1 cut(s)	296
Tru9I	TTAA	1 cut(s)	296
TscAI	CASTG	2 cut(s)	100, 560
TseFI	GTSAC	1 cut(s)	443
TseI	GCWGC	2 cut(s)	50, 219
Tsp45I	GTSAC	1 cut(s)	443
TspDTI	ATGAA	3 cut(s)	113, 344, 360
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	100, 560
Tth111I	GACNNNGTC	1 cut(s)	373
Vha464I	CTTAAG	1 cut(s)	295
XapI	RAATTY	1 cut(s)	313
XmiI	GTMKAC	1 cut(s)	30
XmnI	GAANNNNTTC	1 cut(s)	351
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.