Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Forward (+)

16519017 .. 16520475

Gene Structure 1459 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1077300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGGAGGACTACAACTGTAAGCGAATGGCGGCCATGGACGACTCCACCAACGCAGCCGTATCCAAGAGGAGAAAAGTTACTGCTTCAACGCCGCCATTGCCTCCAACTCAAACAATGCTTCAGCTCCTCAATTCCCAGGACTCCTGCTCCACCCTTTGCTCCGATCACTCTCCGCCTCCTTCCTCTTGCTGCTCCAGCAACGAGCTCAGCGATGTCCCCGCCGCCGCCCGCAGCTCTCCGCTCCTAGATCTGGAGTCCAAGAGTTTCAAAACGGCATTCTCCAACTCGACCTCCTTCGTCAACAATAAATTCAGCAGGGAAACGACGCCGTCGAGCGAGCTGTGCCTGGACTCGGACGAAATGTCATCGCCGGCGCCGCCGGTGTCTCACCGACGGAGAATCCCGGAGAGAAAATCCCCTCCGTTTGAAGAGATCGAAGAGTTCTTCGCTGTGGCTGAGAAGTACGAGCATAAGCGCTTTACAGAGAAGTACAACTATGATATCGTCAAGGACGTGCCTCTGGATGGTCGGTACCAGTGGGTTCGTTTGAAGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

186

Amino Acids

20.82

Weight (kDa)

5.96

Isoelectric Point (pI)

83.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CDI	PF02234	142 - 183	4.4e-16	Cyclin-dependent kinase inhibitor

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	531
AccB1I	GGYRCC	2 cut(s)	373, 531
AccBSI	CCGCTC	1 cut(s)	241
AciI	CCGC	9 cut(s)	29, 92, 173, 219, 222, 225, 229, 239, 377
AcoI	YGGCCR	1 cut(s)	30
AcsI	RAATTY	1 cut(s)	308
AcuI	CTGAAG	1 cut(s)	104
AcyI	GRCGYC	2 cut(s)	326, 374
AfaI	GTAC	3 cut(s)	464, 491, 533
AfeI	AGCGCT	1 cut(s)	476
AfiI	CCNNNNNNNGG	3 cut(s)	250, 352, 524
AgsI	TTSAA	4 cut(s)	87, 268, 428, 550
AhdI	GACNNNNNGTC	1 cut(s)	361
AjiI	CACGTC	1 cut(s)	514
AjnI	CCWGG	2 cut(s)	135, 345
AluBI	AGCT	4 cut(s)	124, 205, 234, 340
AluI	AGCT	4 cut(s)	124, 205, 234, 340
Alw21I	GWGCWC	1 cut(s)	207
Alw26I	GTCTC	1 cut(s)	390
Aor51HI	AGCGCT	1 cut(s)	476
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	53, 189, 231
ApoI	RAATTY	1 cut(s)	308
Asp718I	GGTACC	1 cut(s)	531
AspLEI	GCGC	2 cut(s)	376, 477
AsuC2I	CCSGG	1 cut(s)	404
AsuHPI	GGTGA	1 cut(s)	380
BanI	GGYRCC	2 cut(s)	373, 531
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	1 cut(s)	207
BbvI	GCAGC	3 cut(s)	65, 176, 243
BccI	CCATC	1 cut(s)	518
BceAI	ACGGC	3 cut(s)	41, 288, 313
BciT130I	CCWGG	2 cut(s)	137, 347
BciVI	GTATCC	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	390
BfaI	CTAG	1 cut(s)	245
BfoI	RGCGCY	2 cut(s)	377, 478
BfuI	GTATCC	1 cut(s)	70
BglII	AGATCT	1 cut(s)	247
BisI	GCNGC	8 cut(s)	30, 54, 92, 190, 222, 225, 232, 377
BlpI	GCTNAGC	1 cut(s)	206
BlsI	GCNGC	8 cut(s)	31, 55, 93, 191, 223, 226, 233, 378
Bme1390I	CCNGG	3 cut(s)	137, 347, 404
BmeRI	GACNNNNNGTC	1 cut(s)	361
BmgBI	CACGTC	1 cut(s)	514
BmiI	GGNNCC	2 cut(s)	375, 533
BmrFI	CCNGG	3 cut(s)	137, 347, 404
BpmI	CTGGAG	2 cut(s)	178, 272
Bpu1102I	GCTNAGC	1 cut(s)	206
BpuMI	CCSGG	1 cut(s)	404
BsaHI	GRCGYC	2 cut(s)	326, 374
BsaJI	CCNNGG	2 cut(s)	33, 135
BsaXI	ACNNNNNCTCC	4 cut(s)	131, 161, 275, 305
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 352, 524
Bse118I	RCCGGY	2 cut(s)	370, 379
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	137, 347
BseDI	CCNNGG	2 cut(s)	33, 135
BseGI	GGATG	1 cut(s)	529
BseLI	CCNNNNNNNGG	3 cut(s)	250, 352, 524
BseMI	GCAATG	1 cut(s)	95
BseMII	CTCAG	2 cut(s)	220, 447
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	2 cut(s)	82, 116
BseXI	GCAGC	3 cut(s)	65, 176, 243
BshFI	GGCC	1 cut(s)	32
BshNI	GGYRCC	2 cut(s)	373, 531
BsiHKAI	GWGCWC	1 cut(s)	207
BsiSI	CCGG	3 cut(s)	371, 380, 404
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	3 cut(s)	250, 352, 524
BsmAI	GTCTC	1 cut(s)	390
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	275
BsnI	GGCC	1 cut(s)	32
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	3 cut(s)	163, 247, 432
Bsp1720I	GCTNAGC	1 cut(s)	206
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	9 cut(s)	29, 92, 173, 219, 222, 225, 229, 239, 377
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	219, 448
BspLI	GGNNCC	2 cut(s)	375, 533
BspT107I	GGYRCC	2 cut(s)	373, 531
BsrBI	CCGCTC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	95
BsrFI	RCCGGY	2 cut(s)	370, 379
BsrI	ACTGG	1 cut(s)	535
BssAI	RCCGGY	2 cut(s)	370, 379
BssECI	CCNNGG	2 cut(s)	33, 135
BssMI	GATC	3 cut(s)	163, 247, 432
BssNI	GRCGYC	2 cut(s)	326, 374
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	2 cut(s)	137, 347
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	2 cut(s)	423, 432
BstACI	GRCGYC	2 cut(s)	326, 374
BstC8I	GCNNGC	3 cut(s)	229, 338, 372
BstDEI	CTNAG	2 cut(s)	206, 456
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	529
BstH2I	RGCGCY	2 cut(s)	377, 478
BstHHI	GCGC	2 cut(s)	376, 477
BstKTI	GATC	3 cut(s)	166, 250, 435
BstMAI	GTCTC	1 cut(s)	390
BstMBI	GATC	3 cut(s)	163, 247, 432
BstMWI	GCNNNNNNNGC	4 cut(s)	97, 195, 342, 376
BstNI	CCWGG	2 cut(s)	137, 347
BstSCI	CCNGG	3 cut(s)	135, 345, 402
BstV1I	GCAGC	3 cut(s)	65, 176, 243
BstX2I	RGATCY	1 cut(s)	247
BstYI	RGATCY	1 cut(s)	247
BsuI	GTATCC	1 cut(s)	70
BsuRI	GGCC	1 cut(s)	32
BtgI	CCRYGG	1 cut(s)	33
BtgZI	GCGATG	2 cut(s)	225, 351
BtrI	CACGTC	1 cut(s)	514
BtsCI	GGATG	1 cut(s)	529
BtsIMutI	CAGTG	1 cut(s)	542
Cac8I	GCNNGC	3 cut(s)	229, 338, 372
CfoI	GCGC	2 cut(s)	376, 477
Cfr10I	RCCGGY	2 cut(s)	370, 379
CseI	GACGC	1 cut(s)	334
Csp6I	GTAC	3 cut(s)	463, 490, 532
CviAII	CATG	1 cut(s)	34
CviJI	RGCY	8 cut(s)	32, 56, 124, 205, 234, 340, 455, 553
CviKI_1	RGCY	8 cut(s)	32, 56, 124, 205, 234, 340, 455, 553
CviQI	GTAC	3 cut(s)	463, 490, 532
DdeI	CTNAG	2 cut(s)	206, 456
DinI	GGCGCC	1 cut(s)	375
DpnI	GATC	3 cut(s)	165, 249, 434
DpnII	GATC	3 cut(s)	163, 247, 432
DriI	GACNNNNNGTC	1 cut(s)	361
EaeI	YGGCCR	1 cut(s)	30
Eam1104I	CTCTTC	2 cut(s)	423, 432
Eam1105I	GACNNNNNGTC	1 cut(s)	361
EarI	CTCTTC	2 cut(s)	423, 432
EciI	GGCGGA	1 cut(s)	162
Ecl136II	GAGCTC	1 cut(s)	205
Eco130I	CCWWGG	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	502
Eco47III	AGCGCT	1 cut(s)	476
Eco53kI	GAGCTC	1 cut(s)	205
Eco57I	CTGAAG	1 cut(s)	104
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	2 cut(s)	135, 345
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	33
EcoT38I	GRGCYC	1 cut(s)	207
EgeI	GGCGCC	1 cut(s)	375
EheI	GGCGCC	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	1 cut(s)	37
FaiI	YATR	4 cut(s)	35, 471, 498, 556
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	1 cut(s)	33
FauI	CCCGC	2 cut(s)	226, 236
Fnu4HI	GCNGC	8 cut(s)	30, 54, 92, 190, 222, 225, 232, 377
FokI	GGATG	1 cut(s)	536
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	8 cut(s)	30, 54, 92, 190, 222, 225, 232, 377
FspBI	CTAG	1 cut(s)	245
GlaI	GCGC	2 cut(s)	375, 476
GluI	GCNGC	8 cut(s)	30, 54, 92, 190, 222, 225, 232, 377
GsuI	CTGGAG	2 cut(s)	178, 272
HaeII	RGCGCY	2 cut(s)	377, 478
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	3 cut(s)	371, 380, 404
HgaI	GACGC	1 cut(s)	334
HhaI	GCGC	2 cut(s)	376, 477
Hin1I	GRCGYC	2 cut(s)	326, 374
Hin1II	CATG	1 cut(s)	37
Hin6I	GCGC	2 cut(s)	374, 475
HinP1I	GCGC	2 cut(s)	374, 475
HincII	GTYRAC	1 cut(s)	301
HindII	GTYRAC	1 cut(s)	301
HinfI	GANTC	5 cut(s)	41, 140, 254, 350, 399
HpaII	CCGG	3 cut(s)	371, 380, 404
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	301
Hpy188I	TCNGA	2 cut(s)	163, 355
Hpy188III	TCNNGA	2 cut(s)	251, 521
Hpy8I	GTNNAC	1 cut(s)	301
Hpy99I	CGWCG	3 cut(s)	328, 334, 396
HpyAV	CCTTC	2 cut(s)	189, 304
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	513
HpyF10VI	GCNNNNNNNGC	4 cut(s)	97, 195, 342, 376
HpyF3I	CTNAG	2 cut(s)	206, 456
HpySE526I	ACGT	1 cut(s)	513
Hsp92I	GRCGYC	2 cut(s)	326, 374
Hsp92II	CATG	1 cut(s)	37
HspAI	GCGC	2 cut(s)	374, 475
KasI	GGCGCC	1 cut(s)	373
KpnI	GGTACC	1 cut(s)	535
KroI	GCCGGC	1 cut(s)	370
KroNI	GCCGGC	1 cut(s)	372
Kzo9I	GATC	3 cut(s)	163, 247, 432
LmnI	GCTCC	5 cut(s)	129, 152, 164, 197, 246
Lsp1109I	GCAGC	3 cut(s)	65, 176, 243
MaeI	CTAG	1 cut(s)	245
MaeII	ACGT	1 cut(s)	513
MaeIII	GTNAC	1 cut(s)	76
MalI	GATC	3 cut(s)	165, 249, 434
MbiI	CCGCTC	1 cut(s)	241
MboI	GATC	3 cut(s)	163, 247, 432
MboII	GAAGA	3 cut(s)	436, 440, 449
MflI	RGATCY	1 cut(s)	247
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	2 cut(s)	130, 308
Mly113I	GGCGCC	1 cut(s)	374
MlyI	GAGTC	4 cut(s)	35, 134, 263, 344
MmeI	TCCRAC	2 cut(s)	128, 306
MnlI	CCTC	8 cut(s)	60, 111, 137, 186, 193, 301, 429, 528
MreI	CGCCGGCG	1 cut(s)	370
MroNI	GCCGGC	1 cut(s)	370
MspI	CCGG	3 cut(s)	371, 380, 404
MspR9I	CCNGG	3 cut(s)	137, 347, 404
Mva1269I	GAATGC	1 cut(s)	275
MvaI	CCWGG	2 cut(s)	137, 347
MwoI	GCNNNNNNNGC	4 cut(s)	97, 195, 342, 376
NaeI	GCCGGC	1 cut(s)	372
NarI	GGCGCC	1 cut(s)	374
NciI	CCSGG	1 cut(s)	404
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	3 cut(s)	163, 247, 432
NgoMIV	GCCGGC	1 cut(s)	370
NlaIII	CATG	1 cut(s)	37
NlaIV	GGNNCC	2 cut(s)	375, 533
PcsI	WCGNNNNNNNCGW	3 cut(s)	207, 329, 510
PctI	GAATGC	1 cut(s)	275
PdiI	GCCGGC	1 cut(s)	372
PfeI	GAWTC	1 cut(s)	399
PflFI	GACNNNGTC	1 cut(s)	328
PfoI	TCCNGGA	1 cut(s)	402
PkrI	GCNGC	8 cut(s)	31, 55, 93, 191, 223, 226, 233, 378
PleI	GAGTC	4 cut(s)	35, 134, 262, 344
PluTI	GGCGCC	1 cut(s)	377
PpsI	GAGTC	4 cut(s)	35, 134, 262, 344
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	2 cut(s)	135, 345
PspGI	CCWGG	2 cut(s)	135, 345
PspN4I	GGNNCC	2 cut(s)	375, 533
PsuI	RGATCY	1 cut(s)	247
PsyI	GACNNNGTC	1 cut(s)	328
RsaI	GTAC	3 cut(s)	464, 491, 533
RsaNI	GTAC	3 cut(s)	463, 490, 532
SacI	GAGCTC	1 cut(s)	207
SatI	GCNGC	8 cut(s)	30, 54, 92, 190, 222, 225, 232, 377
Sau3AI	GATC	3 cut(s)	163, 247, 432
SchI	GAGTC	4 cut(s)	35, 134, 263, 344
ScrFI	CCNGG	3 cut(s)	137, 347, 404
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	6 cut(s)	126, 207, 236, 293, 342, 516
SfoI	GGCGCC	1 cut(s)	375
SgrAI	CRCCGGYG	2 cut(s)	370, 379
Sse9I	AATT	2 cut(s)	130, 308
SsiI	CCGC	9 cut(s)	29, 92, 173, 219, 222, 225, 229, 239, 377
SspDI	GGCGCC	1 cut(s)	373
SspMI	CTAG	1 cut(s)	245
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	3 cut(s)	135, 345, 402
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	516
TaqI	TCGA	3 cut(s)	287, 332, 435
TasI	AATT	2 cut(s)	130, 308
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	5 cut(s)	32, 94, 224, 227, 379
TfiI	GAWTC	1 cut(s)	399
TscAI	CASTG	1 cut(s)	542
TseI	GCWGC	3 cut(s)	53, 189, 231
TspGWI	ACGGA	2 cut(s)	409, 411
TspRI	CASTG	1 cut(s)	542
Tth111I	GACNNNGTC	1 cut(s)	328
XapI	RAATTY	1 cut(s)	308
XspI	CTAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.