Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Reverse (-)

14332307 .. 14334709

Gene Structure 2403 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG097500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCGGACTATACGCGAATGGCGGTCGTCGACTCTTCCACCGCCACCGCAGCCGACGAAGACCACTCTCCGTCCAAGAGAAGGAAAATCCTCACTGCTTCTTCGCCTCCAGAAACAATGCTTCATCATCATCATCAGCTCGCCGATTCTCGCAGTTTCAAGCTCCTTCGTTCCGCGAGTTCCTGCTCCGACGAGCACTCTCCTCCTTCTTCCTCTTGCTGCTCCAGCAATGAGCTCAACGACGTCGTTCTTGTCAACTCGCCGCTTCTGGATCTGGAGGCCAAGAGTTGTGAAACCGTCTACACTGCGCCGGCCGGCAATAAATTCAGCAGAGAAACGACGCCGTCGAGCGAGCTGTGCCTGGATAACACCGACGAGATGGAGTCGCCGGCGGTGAGCAAAGCGCCTCCGAGTGACGAGATCGAAGAGTTCTTCGCCACGGCCGAGAAGTACGAGCAAAAGCGCTTCGCAGAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

159

Amino Acids

17.43

Weight (kDa)

4.91

Isoelectric Point (pI)

80.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	246
AccI	GTMKAC	2 cut(s)	30, 300
AccII	CGCG	2 cut(s)	16, 176
AciI	CCGC	7 cut(s)	5, 23, 42, 48, 174, 263, 392
AclWI	GGATC	1 cut(s)	279
AcoI	YGGCCR	2 cut(s)	312, 441
AcsI	RAATTY	1 cut(s)	323
AcyI	GRCGYC	2 cut(s)	243, 341
AfaI	GTAC	1 cut(s)	452
AfeI	AGCGCT	1 cut(s)	464
AfiI	CCNNNNNNNGG	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	160
AjnI	CCWGG	1 cut(s)	360
AluBI	AGCT	4 cut(s)	139, 163, 235, 355
AluI	AGCT	4 cut(s)	139, 163, 235, 355
Alw21I	GWGCWC	2 cut(s)	198, 237
AlwI	GGATC	1 cut(s)	279
Aor51HI	AGCGCT	1 cut(s)	464
AoxI	GGCC	3 cut(s)	279, 312, 441
ApeKI	GCWGC	2 cut(s)	50, 219
ApoI	RAATTY	1 cut(s)	323
AspLEI	GCGC	3 cut(s)	310, 406, 465
AsuHPI	GGTGA	1 cut(s)	406
BanII	GRGCYC	1 cut(s)	237
BbsI	GAAGAC	1 cut(s)	66
Bbv12I	GWGCWC	2 cut(s)	198, 237
BbvI	GCAGC	2 cut(s)	62, 206
BccI	CCATC	1 cut(s)	373
BceAI	ACGGC	2 cut(s)	328, 456
BciT130I	CCWGG	1 cut(s)	362
BfoI	RGCGCY	2 cut(s)	407, 466
BisI	GCNGC	3 cut(s)	51, 220, 263
BlsI	GCNGC	3 cut(s)	52, 221, 264
Bme1390I	CCNGG	1 cut(s)	362
BmrFI	CCNGG	1 cut(s)	362
BpiI	GAAGAC	1 cut(s)	66
BpmI	CTGGAG	3 cut(s)	93, 208, 296
BsaHI	GRCGYC	2 cut(s)	243, 341
BsaJI	CCNNGG	1 cut(s)	438
Bsc4I	CCNNNNNNNGG	1 cut(s)	81
Bse118I	RCCGGY	3 cut(s)	310, 314, 388
Bse3DI	GCAATG	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	362
BseDI	CCNNGG	1 cut(s)	438
BseLI	CCNNNNNNNGG	1 cut(s)	81
BseMI	GCAATG	1 cut(s)	235
BseRI	GAGGAG	1 cut(s)	192
BseX3I	CGGCCG	2 cut(s)	312, 441
BseXI	GCAGC	2 cut(s)	62, 206
Bsh1236I	CGCG	2 cut(s)	16, 176
Bsh1285I	CGRYCG	3 cut(s)	27, 315, 444
BshFI	GGCC	3 cut(s)	281, 314, 443
BsiEI	CGRYCG	3 cut(s)	27, 315, 444
BsiHKAI	GWGCWC	2 cut(s)	198, 237
BsiSI	CCGG	3 cut(s)	311, 315, 389
BslI	CCNNNNNNNGG	1 cut(s)	81
BsnI	GGCC	3 cut(s)	281, 314, 443
Bsp1286I	GDGCHC	2 cut(s)	198, 237
Bsp143I	GATC	2 cut(s)	271, 420
BspACI	CCGC	7 cut(s)	5, 23, 42, 48, 174, 263, 392
BspANI	GGCC	3 cut(s)	281, 314, 443
BspFNI	CGCG	2 cut(s)	16, 176
BspPI	GGATC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	235
BsrFI	RCCGGY	3 cut(s)	310, 314, 388
BssAI	RCCGGY	3 cut(s)	310, 314, 388
BssECI	CCNNGG	1 cut(s)	438
BssMI	GATC	2 cut(s)	271, 420
BssNI	GRCGYC	2 cut(s)	243, 341
Bst2UI	CCWGG	1 cut(s)	362
Bst4CI	ACNGT	1 cut(s)	298
Bst6I	CTCTTC	2 cut(s)	40, 420
BstACI	GRCGYC	2 cut(s)	243, 341
BstC8I	GCNNGC	5 cut(s)	141, 312, 316, 353, 390
BstDSI	CCRYGG	1 cut(s)	438
BstFNI	CGCG	2 cut(s)	16, 176
BstH2I	RGCGCY	2 cut(s)	407, 466
BstHHI	GCGC	3 cut(s)	310, 406, 465
BstKTI	GATC	2 cut(s)	274, 423
BstMBI	GATC	2 cut(s)	271, 420
BstMCI	CGRYCG	3 cut(s)	27, 315, 444
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 225, 357
BstNI	CCWGG	1 cut(s)	362
BstSCI	CCNGG	1 cut(s)	360
BstUI	CGCG	2 cut(s)	16, 176
BstV1I	GCAGC	2 cut(s)	62, 206
BstV2I	GAAGAC	1 cut(s)	66
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BstZI	CGGCCG	2 cut(s)	312, 441
BsuRI	GGCC	3 cut(s)	281, 314, 443
BtgI	CCRYGG	1 cut(s)	438
BtsI	GCAGTG	2 cut(s)	93, 303
BtsIMutI	CAGTG	2 cut(s)	93, 303
Cac8I	GCNNGC	5 cut(s)	141, 312, 316, 353, 390
CfoI	GCGC	3 cut(s)	310, 406, 465
Cfr10I	RCCGGY	3 cut(s)	310, 314, 388
CseI	GACGC	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	451
CviJI	RGCY	8 cut(s)	53, 139, 163, 235, 281, 314, 355, 443
CviKI_1	RGCY	8 cut(s)	53, 139, 163, 235, 281, 314, 355, 443
CviQI	GTAC	1 cut(s)	451
DpnI	GATC	2 cut(s)	273, 422
DpnII	GATC	2 cut(s)	271, 420
EaeI	YGGCCR	2 cut(s)	312, 441
EagI	CGGCCG	2 cut(s)	312, 441
Eam1104I	CTCTTC	2 cut(s)	40, 420
EarI	CTCTTC	2 cut(s)	40, 420
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	235
EclXI	CGGCCG	2 cut(s)	312, 441
Eco24I	GRGCYC	1 cut(s)	237
Eco47III	AGCGCT	1 cut(s)	464
Eco52I	CGGCCG	2 cut(s)	312, 441
Eco53kI	GAGCTC	1 cut(s)	235
EcoICRI	GAGCTC	1 cut(s)	235
EcoRII	CCWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	237
FaiI	YATR	1 cut(s)	12
FblI	GTMKAC	2 cut(s)	30, 300
Fnu4HI	GCNGC	3 cut(s)	51, 220, 263
FriOI	GRGCYC	1 cut(s)	237
Fsp4HI	GCNGC	3 cut(s)	51, 220, 263
GlaI	GCGC	3 cut(s)	309, 405, 464
GluI	GCNGC	3 cut(s)	51, 220, 263
GsuI	CTGGAG	3 cut(s)	93, 208, 296
HaeII	RGCGCY	2 cut(s)	407, 466
HaeIII	GGCC	3 cut(s)	281, 314, 443
HapII	CCGG	3 cut(s)	311, 315, 389
HgaI	GACGC	1 cut(s)	349
HhaI	GCGC	3 cut(s)	310, 406, 465
Hin1I	GRCGYC	2 cut(s)	243, 341
Hin6I	GCGC	3 cut(s)	308, 404, 463
HinP1I	GCGC	3 cut(s)	308, 404, 463
HincII	GTYRAC	2 cut(s)	31, 256
HindII	GTYRAC	2 cut(s)	31, 256
HinfI	GANTC	3 cut(s)	32, 146, 383
HpaII	CCGG	3 cut(s)	311, 315, 389
HphI	GGTGA	1 cut(s)	406
Hpy166II	GTNNAC	3 cut(s)	31, 256, 301
Hpy188I	TCNGA	2 cut(s)	190, 411
Hpy188III	TCNNGA	3 cut(s)	110, 269, 275
Hpy8I	GTNNAC	3 cut(s)	31, 256, 301
Hpy99I	CGWCG	8 cut(s)	32, 59, 194, 245, 248, 343, 349, 377
HpyAV	CCTTC	3 cut(s)	75, 176, 216
HpyCH4III	ACNGT	1 cut(s)	298
HpyCH4IV	ACGT	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 225, 357
HpySE526I	ACGT	1 cut(s)	243
Hsp92I	GRCGYC	2 cut(s)	243, 341
HspAI	GCGC	3 cut(s)	308, 404, 463
KroI	GCCGGC	3 cut(s)	310, 314, 388
KroNI	GCCGGC	3 cut(s)	312, 316, 390
Kzo9I	GATC	2 cut(s)	271, 420
LmnI	GCTCC	3 cut(s)	168, 191, 227
Lsp1109I	GCAGC	2 cut(s)	62, 206
MaeII	ACGT	1 cut(s)	243
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	2 cut(s)	273, 422
MboI	GATC	2 cut(s)	271, 420
MboII	GAAGA	6 cut(s)	27, 71, 93, 201, 424, 437
MflI	RGATCY	1 cut(s)	271
MhlI	GDGCHC	2 cut(s)	198, 237
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	2 cut(s)	26, 392
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	6 cut(s)	101, 117, 213, 223, 271, 417
MreI	CGCCGGCG	1 cut(s)	388
MroNI	GCCGGC	3 cut(s)	310, 314, 388
MspI	CCGG	3 cut(s)	311, 315, 389
MspR9I	CCNGG	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	362
MvnI	CGCG	2 cut(s)	16, 176
MwoI	GCNNNNNNNGC	3 cut(s)	50, 225, 357
NaeI	GCCGGC	3 cut(s)	312, 316, 390
NdeII	GATC	2 cut(s)	271, 420
NgoMIV	GCCGGC	3 cut(s)	310, 314, 388
NmeAIII	GCCGAG	1 cut(s)	469
NmuCI	GTSAC	1 cut(s)	413
PcsI	WCGNNNNNNNCGW	2 cut(s)	344, 441
PdiI	GCCGGC	3 cut(s)	312, 316, 390
PfeI	GAWTC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	343
PkrI	GCNGC	3 cut(s)	52, 221, 264
PleI	GAGTC	2 cut(s)	26, 391
PpsI	GAGTC	2 cut(s)	26, 391
Psp124BI	GAGCTC	1 cut(s)	237
Psp6I	CCWGG	1 cut(s)	360
PspGI	CCWGG	1 cut(s)	360
PsuI	RGATCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	343
RsaI	GTAC	1 cut(s)	452
RsaNI	GTAC	1 cut(s)	451
SacI	GAGCTC	1 cut(s)	237
SalI	GTCGAC	1 cut(s)	29
SatI	GCNGC	3 cut(s)	51, 220, 263
Sau3AI	GATC	2 cut(s)	271, 420
SchI	GAGTC	2 cut(s)	26, 392
ScrFI	CCNGG	1 cut(s)	362
SduI	GDGCHC	2 cut(s)	198, 237
SetI	ASST	5 cut(s)	141, 165, 237, 246, 357
SgrAI	CRCCGGYG	1 cut(s)	388
Sse9I	AATT	1 cut(s)	323
SsiI	CCGC	7 cut(s)	5, 23, 42, 48, 174, 263, 392
SstI	GAGCTC	1 cut(s)	237
StyD4I	CCNGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	298
TaiI	ACGT	1 cut(s)	246
TaqI	TCGA	3 cut(s)	30, 347, 423
TasI	AATT	1 cut(s)	323
TauI	GCSGC	1 cut(s)	265
TfiI	GAWTC	1 cut(s)	146
TscAI	CASTG	2 cut(s)	100, 310
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	2 cut(s)	50, 219
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	1 cut(s)	113
TspGWI	ACGGA	1 cut(s)	60
TspRI	CASTG	2 cut(s)	100, 310
Tth111I	GACNNNGTC	1 cut(s)	343
XapI	RAATTY	1 cut(s)	323
XmiI	GTMKAC	2 cut(s)	30, 300
ZraI	GACGTC	1 cut(s)	244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.