Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003107

Physical Location & Seq

Genomic Coordinates Reverse (-)

18365336 .. 18366744

Gene Structure 1409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G49620.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGCGAAACAAAACCCAAGAGAGATTCTGAGTACGAAGGATCAAACATCAAGAGGATGAGACTCGATGATGATGATGACGTTTTACGCTCACCGACGAGAACTCTTTCTTCTTCTTCCTCTTCTTCTCTGGCTTACTCGGTTTCAGATTCCGGAGGTTTCTGCTCCGTCGCGTTATCTGAAGAAGAAGACGATCATCTAAGCTCAAGCATCAGCTCTGGTTGTTCCAGCAGCGAAACTAACGAAATCGCTACTCGTCTTCCATTTTCAGATCTGGAGGCTCATGAAATCTCCGAAACCGAAATCTCAACGTTACTCACCAACAATTTCAGGAAACAGGGAATTTCATCAAGCGAGAATCTGGGAGAAACAGCAGAAATGGACTCGGCGACGACGGAGATGAGAGATCAGAGAAAGACGGAGAAGAAGAAGAAGATGGAAAAATCACCGACGCAGGCAGAGCTTGATGACTTTTTCTCGGCGGCGGAGAGATACGAACAGAAACGATTCACAGAAAAGTACAACTACGACATCGTCAATGATACGCCGCTTGAAGGTCGGTACCAGTGGGTTAGTCTGAAACCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000079 GO:0001673 GO:0001932 GO:0001933 GO:0003674 GO:0004857 GO:0004860 GO:0004861 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006469 GO:0008150 GO:0009892 GO:0010563 GO:0010605 GO:0016538 GO:0019207 GO:0019210 GO:0019220 GO:0019222 GO:0019887 GO:0030234 GO:0030291 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0032268 GO:0032269 GO:0033673 GO:0042325 GO:0042326 GO:0043073 GO:0043086 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043549 GO:0044092 GO:0044424 GO:0044464 GO:0045736 GO:0045786 GO:0045859 GO:0045936 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051174 GO:0051246 GO:0051248 GO:0051338 GO:0051348 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071900 GO:0071901 GO:0080090 GO:0098772 GO:1904029 GO:1904030

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDI

Protein Analysis

195

Amino Acids

21.96

Weight (kDa)

4.65

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003107)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G49620 AT1G49620 AT1G49620 AT3G19150 AT3G19150 AT3G19150
fragaria_vesca	FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360 FvH4_2g06360
malus_domestica	MD05G1077300.v1.1 MD10G1092500.v1.1
prunus_persica	Prupe.8G122300_v2.0.a1 Prupe.8G122300_v2.0.a1
pyrus_communis	pycom05g07110 pycom10g07590
rosa_chinensis	RchiOBHm_Chr6g0258231
rosa_laevigata	RLG00000000982 RLG00000001994 RLG00000014637 RLG00000024163 RLG00000027108 RLG00000035728
rosa_multiflora	Rmu_sc0004230.1_g000011
rosa_roxburghii	Rroxscaffold_178G00437200 Rroxscaffold_7G00205360
rosa_rugosa	Rorug05G0347300 Rorug05G0579500
rosa_samantha	Rh1BG242200 Rh6AG097500 Rh6BG088500
rosa_wichuraiana	Rw6G008260 Rw6G008340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	561
AccB1I	GGYRCC	1 cut(s)	561
AccII	CGCG	1 cut(s)	173
AccIII	TCCGGA	1 cut(s)	152
AciI	CCGC	3 cut(s)	482, 485, 548
AclI	AACGTT	1 cut(s)	311
AclWI	GGATC	1 cut(s)	49
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	3 cut(s)	35, 521, 563
AfiI	CCNNNNNNNGG	1 cut(s)	554
AgsI	TTSAA	1 cut(s)	554
AluBI	AGCT	3 cut(s)	204, 216, 463
AluI	AGCT	3 cut(s)	204, 216, 463
Alw26I	GTCTC	1 cut(s)	55
AlwI	GGATC	1 cut(s)	49
Aor13HI	TCCGGA	1 cut(s)	152
ApeKI	GCWGC	1 cut(s)	231
ApoI	RAATTY	1 cut(s)	342
Asp700I	GAANNNNTTC	2 cut(s)	106, 506
Asp718I	GGTACC	1 cut(s)	561
AsuHPI	GGTGA	3 cut(s)	84, 310, 438
BanI	GGYRCC	1 cut(s)	561
BbsI	GAAGAC	2 cut(s)	195, 251
BbvI	GCAGC	1 cut(s)	243
BccI	CCATC	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	55
BglII	AGATCT	1 cut(s)	271
BisI	GCNGC	3 cut(s)	232, 483, 548
BlsI	GCNGC	3 cut(s)	233, 484, 549
BmiI	GGNNCC	1 cut(s)	563
BmsI	GCATC	1 cut(s)	219
BpiI	GAAGAC	2 cut(s)	195, 251
BpmI	CTGGAG	1 cut(s)	296
BpuEI	CTTGAG	1 cut(s)	190
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	565
BseAI	TCCGGA	1 cut(s)	152
BseGI	GGATG	1 cut(s)	63
BseLI	CCNNNNNNNGG	1 cut(s)	554
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	1 cut(s)	565
BseXI	GCAGC	1 cut(s)	243
Bsh1236I	CGCG	1 cut(s)	173
BshNI	GGYRCC	1 cut(s)	561
BsiSI	CCGG	1 cut(s)	153
BslI	CCNNNNNNNGG	1 cut(s)	554
BsmAI	GTCTC	1 cut(s)	55
Bsp13I	TCCGGA	1 cut(s)	152
Bsp143I	GATC	4 cut(s)	41, 193, 271, 406
BspACI	CCGC	3 cut(s)	482, 485, 548
BspCNI	CTCAG	1 cut(s)	22
BspEI	TCCGGA	1 cut(s)	152
BspFNI	CGCG	1 cut(s)	173
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	563
BspPI	GGATC	1 cut(s)	49
BspT107I	GGYRCC	1 cut(s)	561
BsrI	ACTGG	1 cut(s)	565
BssMI	GATC	4 cut(s)	41, 193, 271, 406
Bst6I	CTCTTC	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	3 cut(s)	30, 200, 585
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	173
BstKTI	GATC	4 cut(s)	44, 196, 274, 409
BstMAI	GTCTC	1 cut(s)	55
BstMBI	GATC	4 cut(s)	41, 193, 271, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	460
BstUI	CGCG	1 cut(s)	173
BstV1I	GCAGC	1 cut(s)	243
BstV2I	GAAGAC	2 cut(s)	195, 251
BstX2I	RGATCY	1 cut(s)	271
BstYI	RGATCY	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	1 cut(s)	572
Cac8I	GCNNGC	1 cut(s)	456
CciI	TCATGA	1 cut(s)	283
CseI	GACGC	1 cut(s)	460
Csp6I	GTAC	3 cut(s)	34, 520, 562
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	5 cut(s)	134, 204, 216, 281, 463
CviKI_1	RGCY	5 cut(s)	134, 204, 216, 281, 463
CviQI	GTAC	3 cut(s)	34, 520, 562
DdeI	CTNAG	3 cut(s)	30, 200, 585
DpnI	GATC	4 cut(s)	43, 195, 273, 408
DpnII	GATC	4 cut(s)	41, 193, 271, 406
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
EciI	GGCGGA	1 cut(s)	500
Eco57I	CTGAAG	1 cut(s)	201
FaeI	CATG	1 cut(s)	287
FaiI	YATR	1 cut(s)	285
FatI	CATG	1 cut(s)	283
Fnu4HI	GCNGC	3 cut(s)	232, 483, 548
FokI	GGATG	1 cut(s)	70
Fsp4HI	GCNGC	3 cut(s)	232, 483, 548
GluI	GCNGC	3 cut(s)	232, 483, 548
GsuI	CTGGAG	1 cut(s)	296
HapII	CCGG	1 cut(s)	153
HgaI	GACGC	1 cut(s)	460
Hin1II	CATG	1 cut(s)	287
HinfI	GANTC	6 cut(s)	26, 63, 149, 358, 383, 507
HpaII	CCGG	1 cut(s)	153
HphI	GGTGA	3 cut(s)	84, 310, 438
Hpy188I	TCNGA	7 cut(s)	31, 148, 181, 271, 295, 411, 579
Hpy188III	TCNNGA	5 cut(s)	52, 153, 275, 284, 331
Hpy99I	CGWCG	5 cut(s)	100, 173, 394, 397, 454
HpyAV	CCTTC	2 cut(s)	32, 548
HpyCH4IV	ACGT	2 cut(s)	81, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	460
HpyF3I	CTNAG	3 cut(s)	30, 200, 585
HpySE526I	ACGT	2 cut(s)	81, 311
Hsp92II	CATG	1 cut(s)	287
Kpn2I	TCCGGA	1 cut(s)	152
KpnI	GGTACC	1 cut(s)	565
Kzo9I	GATC	4 cut(s)	41, 193, 271, 406
LmnI	GCTCC	1 cut(s)	170
Lsp1109I	GCAGC	1 cut(s)	243
LweI	GCATC	1 cut(s)	219
MaeII	ACGT	2 cut(s)	81, 311
MaeIII	GTNAC	1 cut(s)	312
MalI	GATC	4 cut(s)	43, 195, 273, 408
MboI	GATC	4 cut(s)	41, 193, 271, 406
MflI	RGATCY	1 cut(s)	271
MluCI	AATT	2 cut(s)	325, 342
MlyI	GAGTC	2 cut(s)	57, 377
MnlI	CCTC	4 cut(s)	48, 130, 149, 271
MroI	TCCGGA	1 cut(s)	152
MroXI	GAANNNNTTC	2 cut(s)	106, 506
MspI	CCGG	1 cut(s)	153
MvnI	CGCG	1 cut(s)	173
MwoI	GCNNNNNNNGC	1 cut(s)	460
NdeII	GATC	4 cut(s)	41, 193, 271, 406
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	1 cut(s)	563
NmeAIII	GCCGAG	2 cut(s)	365, 458
PagI	TCATGA	1 cut(s)	283
PdmI	GAANNNNTTC	2 cut(s)	106, 506
PfeI	GAWTC	4 cut(s)	26, 149, 358, 507
PflFI	GACNNNGTC	1 cut(s)	533
PkrI	GCNGC	3 cut(s)	233, 484, 549
PleI	GAGTC	2 cut(s)	57, 377
PpsI	GAGTC	2 cut(s)	57, 377
Psp1406I	AACGTT	1 cut(s)	311
PspN4I	GGNNCC	1 cut(s)	563
PsuI	RGATCY	1 cut(s)	271
PsyI	GACNNNGTC	1 cut(s)	533
RsaI	GTAC	3 cut(s)	35, 521, 563
RsaNI	GTAC	3 cut(s)	34, 520, 562
SatI	GCNGC	3 cut(s)	232, 483, 548
Sau3AI	GATC	4 cut(s)	41, 193, 271, 406
SchI	GAGTC	2 cut(s)	57, 377
SetI	ASST	8 cut(s)	84, 160, 206, 218, 314, 465, 559, 586
SfaNI	GCATC	1 cut(s)	219
SmlI	CTYRAG	1 cut(s)	205
SmoI	CTYRAG	1 cut(s)	205
Sse9I	AATT	2 cut(s)	325, 342
SsiI	CCGC	3 cut(s)	482, 485, 548
TaiI	ACGT	2 cut(s)	84, 314
TaqI	TCGA	1 cut(s)	66
TasI	AATT	2 cut(s)	325, 342
TatI	WGTACW	1 cut(s)	519
TauI	GCSGC	2 cut(s)	485, 550
TfiI	GAWTC	4 cut(s)	26, 149, 358, 507
TscAI	CASTG	1 cut(s)	572
TseI	GCWGC	1 cut(s)	231
TspDTI	ATGAA	2 cut(s)	300, 336
TspGWI	ACGGA	3 cut(s)	157, 410, 434
TspRI	CASTG	1 cut(s)	572
Tth111I	GACNNNGTC	1 cut(s)	533
XapI	RAATTY	1 cut(s)	342
XmnI	GAANNNNTTC	2 cut(s)	106, 506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.