RLG00000035728

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0003107
Physical Location & Seq
Forward (+)
70941055 .. 70941661
607 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035728

Sequence Viewer

Length: 410 bp
ATGGCAGACTGTAAGCAAATGGCGATCGTTGACTCCTGCGCCGCCACTGACCACTCTTCGTCCAAGAGAAGGAAAATCCTCACCGCTTCGCCTCTAGAGACAATGCTTCATCATCATCATCAGCTAGCTCGAAATGAACTCAACGACATCGTTCTCGTCAAAGTACCGCTTCTGGATCTGGAGGTCGACAGTTGTGAAACCGTCTCCACTGCGTCGGTTCCATTCGCTTATGGATCTGGATCTGAATTCGCTTCTTTCGGTTCGTCAAAATCAGCAGAGAAACGATGCCGTCGAGCAAGCTGTGCCTGGAGAACTTCAACGAGATGGCCCTGCTGGCGGTCCAGTTTTACATGTTGCAAGCAGTTTTGGAAAGCAGAGGATTACGACGGTGACAAGGAGAACGATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.24

Weight (kDa)

6.93

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 186
AciI CCGC 4 cut(s) 42, 84, 167, 337
AclWI GGATC 3 cut(s) 183, 241, 247
AcsI RAATTY 1 cut(s) 245
AfaI GTAC 1 cut(s) 165
AfiI CCNNNNNNNGG 2 cut(s) 69, 336
AflIII ACRYGT 1 cut(s) 350
AgsI TTSAA 1 cut(s) 318
AjnI CCWGG 1 cut(s) 305
AluBI AGCT 3 cut(s) 124, 128, 300
AluI AGCT 3 cut(s) 124, 128, 300
Alw26I GTCTC 2 cut(s) 92, 208
AlwI GGATC 3 cut(s) 183, 241, 247
AoxI GGCC 1 cut(s) 326
ApoI RAATTY 1 cut(s) 245
AspLEI GCGC 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 327, 339
AsuHPI GGTGA 2 cut(s) 73, 401
AsuNHI GCTAGC 1 cut(s) 124
AvaII GGWCC 1 cut(s) 339
BccI CCATC 1 cut(s) 318
BceAI ACGGC 1 cut(s) 273
BciT130I CCWGG 1 cut(s) 307
BcoDI GTCTC 2 cut(s) 92, 208
BfaI CTAG 3 cut(s) 95, 125, 408
BglI GCCNNNNNGGC 1 cut(s) 334
BisI GCNGC 1 cut(s) 42
BlsI GCNGC 1 cut(s) 43
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 339
BmgT120I GGNCC 2 cut(s) 327, 339
BmiI GGNNCC 1 cut(s) 219
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 2 cut(s) 275, 394
BmtI GCTAGC 1 cut(s) 128
BpmI CTGGAG 2 cut(s) 200, 328
BsaBI GATNNNNATC 1 cut(s) 238
Bsc4I CCNNNNNNNGG 2 cut(s) 69, 336
Bse1I ACTGG 1 cut(s) 342
Bse8I GATNNNNATC 1 cut(s) 238
BseBI CCWGG 1 cut(s) 307
BseJI GATNNNNATC 1 cut(s) 238
BseLI CCNNNNNNNGG 2 cut(s) 69, 336
BseNI ACTGG 1 cut(s) 342
Bsh1285I CGRYCG 1 cut(s) 27
BshFI GGCC 1 cut(s) 328
BsiEI CGRYCG 1 cut(s) 27
BslI CCNNNNNNNGG 2 cut(s) 69, 336
BsmAI GTCTC 2 cut(s) 92, 208
BsmBI CGTCTC 1 cut(s) 208
BsnI GGCC 1 cut(s) 328
Bsp143I GATC 4 cut(s) 24, 175, 233, 239
BspACI CCGC 4 cut(s) 42, 84, 167, 337
BspANI GGCC 1 cut(s) 328
BspLI GGNNCC 1 cut(s) 219
BspOI GCTAGC 1 cut(s) 128
BspPI GGATC 3 cut(s) 183, 241, 247
BsrI ACTGG 1 cut(s) 342
BssMI GATC 4 cut(s) 24, 175, 233, 239
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 4 cut(s) 11, 191, 202, 389
Bst6I CTCTTC 1 cut(s) 61
BstAPI GCANNNNNTGC 1 cut(s) 302
BstC8I GCNNGC 4 cut(s) 126, 298, 335, 359
BstHHI GCGC 1 cut(s) 41
BstKTI GATC 4 cut(s) 27, 178, 236, 242
BstMAI GTCTC 2 cut(s) 92, 208
BstMBI GATC 4 cut(s) 24, 175, 233, 239
BstMCI CGRYCG 1 cut(s) 27
BstMWI GCNNNNNNNGC 2 cut(s) 302, 334
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 1 cut(s) 354
BstSCI CCNGG 1 cut(s) 305
BstX2I RGATCY 3 cut(s) 175, 233, 239
BstYI RGATCY 3 cut(s) 175, 233, 239
BsuRI GGCC 1 cut(s) 328
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 2 cut(s) 45, 207
Cac8I GCNNGC 4 cut(s) 126, 298, 335, 359
CfoI GCGC 1 cut(s) 41
Cfr13I GGNCC 2 cut(s) 327, 339
CseI GACGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 164
CviAII CATG 1 cut(s) 351
CviJI RGCY 4 cut(s) 124, 128, 300, 328
CviKI_1 RGCY 4 cut(s) 124, 128, 300, 328
CviQI GTAC 1 cut(s) 164
DpnI GATC 4 cut(s) 26, 177, 235, 241
DpnII GATC 4 cut(s) 24, 175, 233, 239
Eam1104I CTCTTC 1 cut(s) 61
EarI CTCTTC 1 cut(s) 61
Eco47I GGWCC 1 cut(s) 339
EcoRI GAATTC 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 305
Esp3I CGTCTC 1 cut(s) 208
FaeI CATG 1 cut(s) 354
FaiI YATR 2 cut(s) 231, 352
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FatI CATG 1 cut(s) 350
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 42
Fsp4HI GCNGC 1 cut(s) 42
FspBI CTAG 3 cut(s) 95, 125, 408
GlaI GCGC 1 cut(s) 40
GluI GCNGC 1 cut(s) 42
GsuI CTGGAG 2 cut(s) 200, 328
HaeIII GGCC 1 cut(s) 328
HgaI GACGC 1 cut(s) 201
HhaI GCGC 1 cut(s) 41
Hin1II CATG 1 cut(s) 354
Hin6I GCGC 1 cut(s) 39
HinP1I GCGC 1 cut(s) 39
HincII GTYRAC 2 cut(s) 31, 187
HindII GTYRAC 2 cut(s) 31, 187
HinfI GANTC 1 cut(s) 32
HphI GGTGA 2 cut(s) 73, 401
Hpy166II GTNNAC 2 cut(s) 31, 187
Hpy188I TCNGA 1 cut(s) 244
Hpy188III TCNNGA 4 cut(s) 95, 173, 179, 237
Hpy8I GTNNAC 2 cut(s) 31, 187
Hpy99I CGWCG 3 cut(s) 217, 294, 389
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 4 cut(s) 11, 191, 202, 389
HpyCH4V TGCA 1 cut(s) 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 302, 334
Hsp92II CATG 1 cut(s) 354
HspAI GCGC 1 cut(s) 39
Kzo9I GATC 4 cut(s) 24, 175, 233, 239
LpnPI CCDG 9 cut(s) 49, 158, 164, 222, 292, 319, 319, 343, 355
LweI GCATC 2 cut(s) 275, 394
MaeI CTAG 3 cut(s) 95, 125, 408
MaeIII GTNAC 1 cut(s) 389
MalI GATC 4 cut(s) 26, 177, 235, 241
MboI GATC 4 cut(s) 24, 175, 233, 239
MboII GAAGA 1 cut(s) 48
MflI RGATCY 3 cut(s) 175, 233, 239
MluCI AATT 1 cut(s) 245
MlyI GAGTC 1 cut(s) 26
MnlI CCTC 4 cut(s) 89, 102, 175, 370
MspR9I CCNGG 1 cut(s) 307
MvaI CCWGG 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 302, 334
NdeII GATC 4 cut(s) 24, 175, 233, 239
NheI GCTAGC 1 cut(s) 124
NlaIII CATG 1 cut(s) 354
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 389
NspI RCATGY 1 cut(s) 354
PciI ACATGT 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 289
PkrI GCNGC 1 cut(s) 43
Ple19I CGATCG 1 cut(s) 27
PleI GAGTC 1 cut(s) 26
PpsI GAGTC 1 cut(s) 26
PscI ACATGT 1 cut(s) 350
Psp6I CCWGG 1 cut(s) 305
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 1 cut(s) 219
PspPI GGNCC 2 cut(s) 327, 339
PsuI RGATCY 3 cut(s) 175, 233, 239
PvuI CGATCG 1 cut(s) 27
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SalI GTCGAC 1 cut(s) 185
SatI GCNGC 1 cut(s) 42
Sau3AI GATC 4 cut(s) 24, 175, 233, 239
Sau96I GGNCC 2 cut(s) 327, 339
SchI GAGTC 1 cut(s) 26
ScrFI CCNGG 1 cut(s) 307
SetI ASST 4 cut(s) 126, 130, 186, 302
SfaNI GCATC 2 cut(s) 275, 394
SinI GGWCC 1 cut(s) 339
Sse9I AATT 1 cut(s) 245
SsiI CCGC 4 cut(s) 42, 84, 167, 337
SspMI CTAG 3 cut(s) 95, 125, 408
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 4 cut(s) 11, 191, 202, 389
TaqI TCGA 3 cut(s) 130, 186, 292
TasI AATT 1 cut(s) 245
TauI GCSGC 1 cut(s) 44
TscAI CASTG 2 cut(s) 52, 214
TseFI GTSAC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 2 cut(s) 98, 150
TspRI CASTG 2 cut(s) 52, 214
VpaK11BI GGWCC 1 cut(s) 339
XapI RAATTY 1 cut(s) 245
XbaI TCTAGA 1 cut(s) 94
XceI RCATGY 1 cut(s) 354
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 3 cut(s) 95, 125, 408
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.