Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006058.1

Orthogroup ID

OG0010502

Physical Location & Seq

Genomic Coordinates Forward (+)

13005 .. 15740

Gene Structure 2736 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006058.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

atgtctgccggtgctgcttctgatcgcggcggcgggatctactggggtcgaaaggaggtctccgattccaaaggcatcgccgtcatcttcgcctgggtttcgattcccgagcgacacttgaagagctacgtcaatttgtatgcgtctcttggttggaactccctcgtctgccatgcccattttctccacgcattctatcccgaaagggcgatgtcgtcggcatttgatatcctgaatgagcttgtggaggagctaaggattaagccgtgtcccgttgtttttgtgggtctttctgctggtactaaagcttgtatgtacaaagtttttcagattattgaaggaatttgcgaaggccagctgtatccgggtgaataccgattggtgaggaaatgcataactggacacatctatgattccggcccggttgattttacaactgaccttggtacacactatgctctacacccaaccattctaaaggtgcctggttcatcaaaattggtttcgtgggttgctaaaggcattgcttctggtctggatgctctatatcttactcgatttgaatcccagtgggctgagtattggcaggctctgtattcttcagttaatttgggtgctccatttctcattttgtgctctgataaagacgatctcgctccctatcatgttgtctgcactttcagtcaacgtttacaagagtttggaggtgatgtcaagcttgtgaaattgaacggtcattataagaactatccaatacaatataggtcttctgttactcattttcttgggaaggcagctttgattttttctcaaagaattcagaagcttgaatgggaaatgactagcatggaaggcatgcatgatgagatatctgaactaatctgtgatctccagaaagcagccgttaactctaatgagagcctcagaagagttgcagttgagccaagcgatcacttcttcttgccaagttcagcagagaatcaaaatggtacagactctgggtcattacaagatgaacagaaagaaagatcgctctgtctgtctaagcctccaagcctcagtgcacatagtgtacttggcaaagtattgtttgatgtttgtgtccctaagaacgttgatggttgggatatcaaattctgtgggtctttgaatgggcagccatttgcttctgctcgtaggaattcacctcctcgtggtatcaaaggtctccgtcgctcgagattatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF829

Protein Analysis

408

Amino Acids

45.35

Weight (kDa)

7.95

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010502)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G15695
fragaria_vesca	FvH4_2g06340 FvH4_2g06340
malus_domestica	MD05G1077400.v1.1 MD10G1092600.v1.1
prunus_persica	Prupe.8G122400_v2.0.a1
pyrus_communis	pycom05g07120 pycom10g07630
rosa_chinensis	RchiOBHm_Chr6g0258221
rosa_laevigata	RLG00000014638
rosa_multiflora	Rmu_sc0004230.1_g000007 Rmu_sc0006058.1_g000004
rosa_roxburghii	Rroxscaffold_7G00205350
rosa_rugosa	Rorug05G0579400 Rorug05G0579500
rosa_samantha	Rh6AG097400 Rh6BG088400 Rh6CG084300 Rh6DG080500
rosa_wichuraiana	Rw6G008250 Rw6G008330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	741
AccB1I	GGYRCC	1 cut(s)	481
AccII	CGCG	1 cut(s)	27
AciI	CCGC	3 cut(s)	27, 30, 33
AclI	AACGTT	2 cut(s)	688, 1113
AclWI	GGATC	1 cut(s)	44
AcsI	RAATTY	4 cut(s)	342, 816, 1133, 1180
AcuI	CTGAAG	1 cut(s)	585
AdeI	CACNNNGTG	1 cut(s)	1070
AfaI	GTAC	5 cut(s)	301, 317, 448, 991, 1074
AfiI	CCNNNNNNNGG	1 cut(s)	1193
AgsI	TTSAA	6 cut(s)	121, 338, 563, 730, 830, 1150
AhdI	GACNNNNNGTC	1 cut(s)	1000
AjnI	CCWGG	2 cut(s)	92, 484
AluBI	AGCT	8 cut(s)	126, 241, 253, 308, 358, 718, 797, 826
AluI	AGCT	8 cut(s)	126, 241, 253, 308, 358, 718, 797, 826
Alw21I	GWGCWC	3 cut(s)	619, 638, 1066
Alw26I	GTCTC	3 cut(s)	64, 150, 1211
Alw44I	GTGCAC	1 cut(s)	1062
AlwI	GGATC	1 cut(s)	44
AlwNI	CAGNNNCTG	2 cut(s)	592, 998
Ama87I	CYCGRG	2 cut(s)	107, 1216
AoxI	GGCC	2 cut(s)	352, 418
ApaLI	GTGCAC	1 cut(s)	1062
ApeKI	GCWGC	4 cut(s)	14, 794, 899, 1156
ApoI	RAATTY	4 cut(s)	342, 816, 1133, 1180
AspS9I	GGNCC	1 cut(s)	419
AsuC2I	CCSGG	2 cut(s)	366, 422
AsuHPI	GGTGA	4 cut(s)	380, 394, 719, 1176
AvaI	CYCGRG	2 cut(s)	107, 1216
BaeGI	GKGCMC	1 cut(s)	1066
BanI	GGYRCC	1 cut(s)	481
BauI	CACGAG	1 cut(s)	1191
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	3 cut(s)	619, 638, 1066
BbvI	GCAGC	3 cut(s)	806, 911, 1168
BccI	CCATC	1 cut(s)	1112
BceAI	ACGGC	3 cut(s)	65, 250, 887
BciT130I	CCWGG	2 cut(s)	94, 486
BciVI	GTATCC	1 cut(s)	372
BcnI	CCSGG	2 cut(s)	366, 422
BcoDI	GTCTC	3 cut(s)	64, 150, 1211
BfaI	CTAG	1 cut(s)	843
BfuI	GTATCC	1 cut(s)	372
BisI	GCNGC	6 cut(s)	15, 28, 31, 795, 900, 1157
BlsI	GCNGC	6 cut(s)	16, 29, 32, 796, 901, 1158
Bme1390I	CCNGG	4 cut(s)	94, 366, 422, 486
BmeRI	GACNNNNNGTC	1 cut(s)	1000
BmeT110I	CYCGRG	2 cut(s)	107, 1216
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	4 cut(s)	94, 366, 422, 486
BmrI	ACTGGG	2 cut(s)	52, 562
BmsI	GCATC	2 cut(s)	84, 529
BmuI	ACTGGG	2 cut(s)	52, 562
BpiI	GAAGAC	1 cut(s)	759
BpmI	CTGGAG	1 cut(s)	875
Bpu10I	CCTNAGC	1 cut(s)	254
BpuMI	CCSGG	2 cut(s)	366, 422
BsaBI	GATNNNNATC	1 cut(s)	562
BsaI	GGTCTC	2 cut(s)	64, 1211
BsaJI	CCNNGG	2 cut(s)	93, 442
BsaXI	ACNNNNNCTCC	2 cut(s)	696, 726
Bsc4I	CCNNNNNNNGG	1 cut(s)	1193
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	3 cut(s)	47, 403, 568
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	562
BseBI	CCWGG	2 cut(s)	94, 486
BseDI	CCNNGG	2 cut(s)	93, 442
BseGI	GGATG	1 cut(s)	544
BseJI	GATNNNNATC	1 cut(s)	562
BseLI	CCNNNNNNNGG	1 cut(s)	1193
BseMI	GCAATG	1 cut(s)	522
BseMII	CTCAG	3 cut(s)	567, 937, 1072
BseNI	ACTGG	3 cut(s)	47, 403, 568
BseRI	GAGGAG	2 cut(s)	263, 1179
BseSI	GKGCMC	1 cut(s)	1066
BseXI	GCAGC	3 cut(s)	806, 911, 1168
BsgI	GTGCAG	1 cut(s)	658
Bsh1236I	CGCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	354, 420
BshNI	GGYRCC	1 cut(s)	481
BsiHKAI	GWGCWC	3 cut(s)	619, 638, 1066
BsiHKCI	CYCGRG	2 cut(s)	107, 1216
BsiSI	CCGG	4 cut(s)	9, 365, 417, 422
BslFI	GGGAC	2 cut(s)	255, 1088
BslI	CCNNNNNNNGG	1 cut(s)	1193
BsmAI	GTCTC	3 cut(s)	64, 150, 1211
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	2 cut(s)	255, 1088
BsmI	GAATGC	1 cut(s)	191
BsnI	GGCC	2 cut(s)	354, 420
Bso31I	GGTCTC	2 cut(s)	64, 1211
BsoBI	CYCGRG	2 cut(s)	107, 1216
Bsp1286I	GDGCHC	3 cut(s)	619, 638, 1066
Bsp1407I	TGTACA	1 cut(s)	315
Bsp143I	GATC	6 cut(s)	22, 36, 649, 886, 949, 1028
BspACI	CCGC	3 cut(s)	27, 30, 33
BspANI	GGCC	2 cut(s)	354, 420
BspCNI	CTCAG	3 cut(s)	568, 936, 1071
BspFNI	CGCG	1 cut(s)	27
BspLI	GGNNCC	1 cut(s)	483
BspPI	GGATC	1 cut(s)	44
BspQI	GCTCTTC	1 cut(s)	116
BspT107I	GGYRCC	1 cut(s)	481
BspTNI	GGTCTC	2 cut(s)	64, 1211
BsrDI	GCAATG	1 cut(s)	522
BsrFI	RCCGGY	1 cut(s)	8
BsrGI	TGTACA	1 cut(s)	315
BsrI	ACTGG	3 cut(s)	47, 403, 568
BssAI	RCCGGY	1 cut(s)	8
BssECI	CCNNGG	2 cut(s)	93, 442
BssMI	GATC	6 cut(s)	22, 36, 649, 886, 949, 1028
BssSI	CACGAG	1 cut(s)	1191
BssT1I	CCWWGG	1 cut(s)	442
Bst2BI	CACGAG	1 cut(s)	1191
Bst2UI	CCWGG	2 cut(s)	94, 486
Bst4CI	ACNGT	1 cut(s)	734
Bst6I	CTCTTC	2 cut(s)	116, 922
BstAUI	TGTACA	1 cut(s)	315
BstC8I	GCNNGC	3 cut(s)	356, 588, 857
BstDEI	CTNAG	6 cut(s)	254, 576, 923, 1044, 1058, 1107
BstF5I	GGATG	1 cut(s)	544
BstFNI	CGCG	1 cut(s)	27
BstKTI	GATC	6 cut(s)	25, 39, 652, 889, 952, 1031
BstMAI	GTCTC	3 cut(s)	64, 150, 1211
BstMBI	GATC	6 cut(s)	22, 36, 649, 886, 949, 1028
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 852
BstNI	CCWGG	2 cut(s)	94, 486
BstNSI	RCATGY	1 cut(s)	859
BstSCI	CCNGG	4 cut(s)	92, 364, 420, 484
BstSLI	GKGCMC	1 cut(s)	1066
BstUI	CGCG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	806, 911, 1168
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BsuI	GTATCC	1 cut(s)	372
BsuRI	GGCC	2 cut(s)	354, 420
BtgZI	GCGATG	2 cut(s)	61, 224
BtsCI	GGATG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	575, 1066
Cac8I	GCNNGC	3 cut(s)	356, 588, 857
CaiI	CAGNNNCTG	2 cut(s)	592, 998
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	1 cut(s)	419
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	5 cut(s)	300, 316, 447, 990, 1073
CspCI	CAANNNNNGTGG	2 cut(s)	1120, 1155
CviAII	CATG	5 cut(s)	173, 665, 847, 856, 860
CviQI	GTAC	5 cut(s)	300, 316, 447, 990, 1073
DdeI	CTNAG	6 cut(s)	254, 576, 923, 1044, 1058, 1107
DpnI	GATC	6 cut(s)	24, 38, 651, 888, 951, 1030
DpnII	GATC	6 cut(s)	22, 36, 649, 886, 949, 1028
DraIII	CACNNNGTG	1 cut(s)	1070
DriI	GACNNNNNGTC	1 cut(s)	1000
Eam1104I	CTCTTC	2 cut(s)	116, 922
Eam1105I	GACNNNNNGTC	1 cut(s)	1000
EarI	CTCTTC	2 cut(s)	116, 922
Eco130I	CCWWGG	1 cut(s)	442
Eco31I	GGTCTC	2 cut(s)	64, 1211
Eco32I	GATATC	3 cut(s)	229, 870, 1129
Eco57I	CTGAAG	1 cut(s)	585
Eco88I	CYCGRG	2 cut(s)	107, 1216
EcoRI	GAATTC	2 cut(s)	816, 1180
EcoRII	CCWGG	2 cut(s)	92, 484
EcoRV	GATATC	3 cut(s)	229, 870, 1129
EcoT14I	CCWWGG	1 cut(s)	442
EcoT22I	ATGCAT	2 cut(s)	395, 861
ErhI	CCWWGG	1 cut(s)	442
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	5 cut(s)	176, 668, 850, 859, 863
FaqI	GGGAC	2 cut(s)	255, 1088
FatI	CATG	5 cut(s)	172, 664, 846, 855, 859
FauI	CCCGC	1 cut(s)	26
Fnu4HI	GCNGC	6 cut(s)	15, 28, 31, 795, 900, 1157
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	6 cut(s)	15, 28, 31, 795, 900, 1157
FspBI	CTAG	1 cut(s)	843
GluI	GCNGC	6 cut(s)	15, 28, 31, 795, 900, 1157
GsuI	CTGGAG	1 cut(s)	875
HaeIII	GGCC	2 cut(s)	354, 420
HapII	CCGG	4 cut(s)	9, 365, 417, 422
HgaI	GACGC	1 cut(s)	132
Hin1II	CATG	5 cut(s)	176, 668, 850, 859, 863
HincII	GTYRAC	2 cut(s)	686, 907
HindII	GTYRAC	2 cut(s)	686, 907
HindIII	AAGCTT	3 cut(s)	306, 716, 824
HinfI	GANTC	6 cut(s)	65, 103, 413, 563, 979, 995
HpaI	GTTAAC	1 cut(s)	907
HpaII	CCGG	4 cut(s)	9, 365, 417, 422
HphI	GGTGA	4 cut(s)	380, 394, 719, 1176
Hpy166II	GTNNAC	6 cut(s)	449, 686, 692, 907, 1064, 1073
Hpy188I	TCNGA	7 cut(s)	22, 64, 330, 640, 822, 874, 926
Hpy188III	TCNNGA	6 cut(s)	107, 200, 232, 536, 892, 1218
Hpy8I	GTNNAC	6 cut(s)	449, 686, 692, 907, 1064, 1073
Hpy99I	CGWCG	2 cut(s)	220, 1215
HpyAV	CCTTC	4 cut(s)	332, 344, 784, 845
HpyCH4III	ACNGT	1 cut(s)	734
HpyCH4IV	ACGT	3 cut(s)	129, 688, 1113
HpyCH4V	TGCA	5 cut(s)	393, 675, 859, 935, 1064
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 852
HpyF3I	CTNAG	6 cut(s)	254, 576, 923, 1044, 1058, 1107
HpySE526I	ACGT	3 cut(s)	129, 688, 1113
Hsp92II	CATG	5 cut(s)	176, 668, 850, 859, 863
KspAI	GTTAAC	1 cut(s)	907
Kzo9I	GATC	6 cut(s)	22, 36, 649, 886, 949, 1028
LguI	GCTCTTC	1 cut(s)	116
LmnI	GCTCC	3 cut(s)	250, 622, 661
Lsp1109I	GCAGC	3 cut(s)	806, 911, 1168
LweI	GCATC	2 cut(s)	84, 529
MaeI	CTAG	1 cut(s)	843
MaeII	ACGT	3 cut(s)	129, 688, 1113
MaeIII	GTNAC	1 cut(s)	772
MalI	GATC	6 cut(s)	24, 38, 651, 888, 951, 1030
MboI	GATC	6 cut(s)	22, 36, 649, 886, 949, 1028
MboII	GAAGA	6 cut(s)	79, 133, 591, 759, 939, 949
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	3 cut(s)	619, 638, 1066
MluCI	AATT	8 cut(s)	133, 342, 497, 607, 725, 816, 1133, 1180
MlyI	GAGTC	1 cut(s)	989
MmeI	TCCRAC	1 cut(s)	134
Mph1103I	ATGCAT	2 cut(s)	395, 861
MseI	TTAA	3 cut(s)	261, 606, 906
MslI	CAYNNNNRTG	1 cut(s)	408
MspA1I	CMGCKG	1 cut(s)	358
MspI	CCGG	4 cut(s)	9, 365, 417, 422
MspR9I	CCNGG	4 cut(s)	94, 366, 422, 486
Mva1269I	GAATGC	1 cut(s)	191
MvaI	CCWGG	2 cut(s)	94, 486
MvnI	CGCG	1 cut(s)	27
MwoI	GCNNNNNNNGC	2 cut(s)	14, 852
NciI	CCSGG	2 cut(s)	366, 422
NdeII	GATC	6 cut(s)	22, 36, 649, 886, 949, 1028
NlaIII	CATG	5 cut(s)	176, 668, 850, 859, 863
NlaIV	GGNNCC	1 cut(s)	483
NsiI	ATGCAT	2 cut(s)	395, 861
NspI	RCATGY	1 cut(s)	859
PaeI	GCATGC	1 cut(s)	859
PaeR7I	CTCGAG	1 cut(s)	1216
PciSI	GCTCTTC	1 cut(s)	116
PctI	GAATGC	1 cut(s)	191
PfeI	GAWTC	5 cut(s)	65, 103, 413, 563, 979
PkrI	GCNGC	6 cut(s)	16, 29, 32, 796, 901, 1158
PleI	GAGTC	1 cut(s)	989
PpsI	GAGTC	1 cut(s)	989
PsiI	TTATAA	1 cut(s)	741
Psp1406I	AACGTT	2 cut(s)	688, 1113
Psp6I	CCWGG	2 cut(s)	92, 484
PspGI	CCWGG	2 cut(s)	92, 484
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	1 cut(s)	419
PstNI	CAGNNNCTG	2 cut(s)	592, 998
PsuI	RGATCY	1 cut(s)	36
PvuII	CAGCTG	1 cut(s)	358
RsaI	GTAC	5 cut(s)	301, 317, 448, 991, 1074
RsaNI	GTAC	5 cut(s)	300, 316, 447, 990, 1073
RseI	CAYNNNNRTG	1 cut(s)	408
SapI	GCTCTTC	1 cut(s)	116
SaqAI	TTAA	3 cut(s)	261, 606, 906
SatI	GCNGC	6 cut(s)	15, 28, 31, 795, 900, 1157
Sau3AI	GATC	6 cut(s)	22, 36, 649, 886, 949, 1028
Sau96I	GGNCC	1 cut(s)	419
SchI	GAGTC	1 cut(s)	989
ScrFI	CCNGG	4 cut(s)	94, 366, 422, 486
SduI	GDGCHC	3 cut(s)	619, 638, 1066
SfaNI	GCATC	2 cut(s)	84, 529
Sfr274I	CTCGAG	1 cut(s)	1216
SlaI	CTCGAG	1 cut(s)	1216
SmiMI	CAYNNNNRTG	1 cut(s)	408
SmlI	CTYRAG	1 cut(s)	1216
SmoI	CTYRAG	1 cut(s)	1216
SphI	GCATGC	1 cut(s)	859
Sse9I	AATT	8 cut(s)	133, 342, 497, 607, 725, 816, 1133, 1180
SsiI	CCGC	3 cut(s)	27, 30, 33
SspMI	CTAG	1 cut(s)	843
StyD4I	CCNGG	4 cut(s)	92, 364, 420, 484
StyI	CCWWGG	1 cut(s)	442
TaaI	ACNGT	1 cut(s)	734
TaiI	ACGT	3 cut(s)	132, 691, 1116
TaqI	TCGA	4 cut(s)	49, 101, 556, 1217
TasI	AATT	8 cut(s)	133, 342, 497, 607, 725, 816, 1133, 1180
TatI	WGTACW	2 cut(s)	315, 1072
TauI	GCSGC	2 cut(s)	30, 33
TfiI	GAWTC	5 cut(s)	65, 103, 413, 563, 979
Tru1I	TTAA	3 cut(s)	261, 606, 906
Tru9I	TTAA	3 cut(s)	261, 606, 906
TscAI	CASTG	2 cut(s)	575, 1066
TseI	GCWGC	4 cut(s)	14, 794, 899, 1156
TspDTI	ATGAA	2 cut(s)	480, 1029
TspGWI	ACGGA	1 cut(s)	1199
TspRI	CASTG	2 cut(s)	575, 1066
VneI	GTGCAC	1 cut(s)	1062
XapI	RAATTY	4 cut(s)	342, 816, 1133, 1180
XceI	RCATGY	1 cut(s)	859
XhoI	CTCGAG	1 cut(s)	1216
XspI	CTAG	1 cut(s)	843
Zsp2I	ATGCAT	2 cut(s)	395, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.