Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18840 AT3G18840 |
| fragaria_vesca | FvH4_2g08350 |
| malus_domestica | MD10G1080500.v1.1 |
| prunus_persica | Prupe.8G101800_v2.0.a1 |
| pyrus_communis | pycom10g06370 |
| rosa_chinensis | RchiOBHm_Chr6g0263351 |
| rosa_laevigata | RLG00000014350 RLG00000014352 RLG00000014358 RLG00000014361 |
| rosa_multiflora | Rmu_sc0000565.1_g000003 Rmu_sc0000565.1_g000007 Rmu_sc0003785.1_g000002 |
| rosa_roxburghii | Rroxscaffold_176G00431070 Rroxscaffold_7G00204480 |
| rosa_rugosa | Rorug06G0004400 Rorug06G0004500 Rorug06G0004600 Rorug06G0004900 |
| rosa_samantha | Rh6AG124100 Rh6BG118900 Rh6BG119400 Rh6CG116900 Rh6CG117400 Rh6DG105600 Rh6DG106100 |
| rosa_wichuraiana | Rw6G010650 Rw6G010790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 3 cut(s) | 243, 878, 1754 |
| Acc16I | TGCGCA | 1 cut(s) | 696 |
| Acc65I | GGTACC | 1 cut(s) | 1769 |
| AccB1I | GGYRCC | 2 cut(s) | 1190, 1769 |
| AccBSI | CCGCTC | 1 cut(s) | 236 |
| AccI | GTMKAC | 1 cut(s) | 159 |
| AccII | CGCG | 2 cut(s) | 311, 1775 |
| AclWI | GGATC | 2 cut(s) | 30, 1785 |
| AcuI | CTGAAG | 1 cut(s) | 2007 |
| AcyI | GRCGYC | 2 cut(s) | 231, 1347 |
| AfaI | GTAC | 2 cut(s) | 1301, 1771 |
| AfeI | AGCGCT | 1 cut(s) | 469 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 841, 1779, 2006 |
| AgsI | TTSAA | 8 cut(s) | 573, 808, 850, 972, 1205, 1262, 1342, 1447 |
| AjiI | CACGTC | 1 cut(s) | 31 |
| AjnI | CCWGG | 1 cut(s) | 1219 |
| Alw21I | GWGCWC | 2 cut(s) | 485, 1584 |
| Alw26I | GTCTC | 5 cut(s) | 9, 23, 401, 1730, 1741 |
| AlwI | GGATC | 2 cut(s) | 30, 1785 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 130 |
| Ama87I | CYCGRG | 1 cut(s) | 988 |
| Aor51HI | AGCGCT | 1 cut(s) | 469 |
| AoxI | GGCC | 3 cut(s) | 106, 213, 1460 |
| ApaI | GGGCCC | 1 cut(s) | 217 |
| ApeKI | GCWGC | 2 cut(s) | 1208, 1808 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 812, 862, 1277 |
| Asp718I | GGTACC | 1 cut(s) | 1769 |
| AspLEI | GCGC | 3 cut(s) | 311, 470, 697 |
| AspS9I | GGNCC | 4 cut(s) | 208, 213, 214, 1216 |
| AsuC2I | CCSGG | 3 cut(s) | 212, 217, 1312 |
| AsuHPI | GGTGA | 6 cut(s) | 61, 103, 457, 1391, 1538, 1960 |
| AsuII | TTCGAA | 2 cut(s) | 503, 1434 |
| AvaI | CYCGRG | 1 cut(s) | 988 |
| AvaII | GGWCC | 2 cut(s) | 208, 1216 |
| BaeGI | GKGCMC | 1 cut(s) | 217 |
| BanI | GGYRCC | 2 cut(s) | 1190, 1769 |
| BanII | GRGCYC | 1 cut(s) | 217 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1107, 1139 |
| BbsI | GAAGAC | 1 cut(s) | 1880 |
| Bbv12I | GWGCWC | 2 cut(s) | 485, 1584 |
| BbvCI | CCTCAGC | 1 cut(s) | 1812 |
| BbvI | GCAGC | 2 cut(s) | 1195, 1795 |
| BccI | CCATC | 4 cut(s) | 47, 156, 182, 753 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 465, 499 |
| BciT130I | CCWGG | 1 cut(s) | 1221 |
| BcnI | CCSGG | 3 cut(s) | 212, 217, 1312 |
| BcoDI | GTCTC | 5 cut(s) | 9, 23, 401, 1730, 1741 |
| BfaI | CTAG | 6 cut(s) | 285, 780, 821, 1013, 1731, 1929 |
| BfmI | CTRYAG | 2 cut(s) | 1659, 1719 |
| BfoI | RGCGCY | 1 cut(s) | 471 |
| BisI | GCNGC | 5 cut(s) | 221, 234, 591, 1209, 1809 |
| BlsI | GCNGC | 5 cut(s) | 222, 235, 592, 1210, 1810 |
| Bme1390I | CCNGG | 4 cut(s) | 212, 217, 1221, 1312 |
| Bme18I | GGWCC | 2 cut(s) | 208, 1216 |
| BmeT110I | CYCGRG | 1 cut(s) | 988 |
| BmgBI | CACGTC | 1 cut(s) | 31 |
| BmgT120I | GGNCC | 4 cut(s) | 208, 213, 214, 1216 |
| BmiI | GGNNCC | 4 cut(s) | 215, 1192, 1218, 1771 |
| BmrFI | CCNGG | 4 cut(s) | 212, 217, 1221, 1312 |
| BmsI | GCATC | 4 cut(s) | 514, 1153, 1456, 1985 |
| BpiI | GAAGAC | 1 cut(s) | 1880 |
| BpmI | CTGGAG | 2 cut(s) | 82, 1598 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1812 |
| Bpu14I | TTCGAA | 2 cut(s) | 503, 1434 |
| BpuEI | CTTGAG | 4 cut(s) | 412, 987, 1267, 1646 |
| BpuMI | CCSGG | 3 cut(s) | 212, 217, 1312 |
| BsaAI | YACGTR | 1 cut(s) | 1900 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1175 |
| BsaHI | GRCGYC | 2 cut(s) | 231, 1347 |
| BsaJI | CCNNGG | 6 cut(s) | 1212, 1219, 1220, 1402, 1773, 1971 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 80, 110 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 841, 1779, 2006 |
| Bse118I | RCCGGY | 1 cut(s) | 510 |
| Bse1I | ACTGG | 4 cut(s) | 457, 1540, 1581, 1826 |
| Bse3DI | GCAATG | 1 cut(s) | 954 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1175 |
| BseBI | CCWGG | 1 cut(s) | 1221 |
| BseDI | CCNNGG | 6 cut(s) | 1212, 1219, 1220, 1402, 1773, 1971 |
| BseGI | GGATG | 3 cut(s) | 84, 349, 1976 |
| BseJI | GATNNNNATC | 1 cut(s) | 1175 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 841, 1779, 2006 |
| BseMI | GCAATG | 1 cut(s) | 954 |
| BseMII | CTCAG | 2 cut(s) | 1803, 1944 |
| BseNI | ACTGG | 4 cut(s) | 457, 1540, 1581, 1826 |
| BseRI | GAGGAG | 2 cut(s) | 728, 1757 |
| BseSI | GKGCMC | 1 cut(s) | 217 |
| BseXI | GCAGC | 2 cut(s) | 1195, 1795 |
| BseYI | CCCAGC | 1 cut(s) | 123 |
| BsgI | GTGCAG | 2 cut(s) | 550, 1808 |
| Bsh1236I | CGCG | 2 cut(s) | 311, 1775 |
| BshFI | GGCC | 3 cut(s) | 108, 215, 1462 |
| BshNI | GGYRCC | 2 cut(s) | 1190, 1769 |
| BsiHKAI | GWGCWC | 2 cut(s) | 485, 1584 |
| BsiHKCI | CYCGRG | 1 cut(s) | 988 |
| BsiSI | CCGG | 4 cut(s) | 211, 217, 511, 1311 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 841, 1779, 2006 |
| BsmAI | GTCTC | 5 cut(s) | 9, 23, 401, 1730, 1741 |
| BsmBI | CGTCTC | 1 cut(s) | 401 |
| BsmI | GAATGC | 2 cut(s) | 583, 1702 |
| BsnI | GGCC | 3 cut(s) | 108, 215, 1462 |
| BsoBI | CYCGRG | 1 cut(s) | 988 |
| Bsp119I | TTCGAA | 2 cut(s) | 503, 1434 |
| Bsp120I | GGGCCC | 1 cut(s) | 213 |
| Bsp1286I | GDGCHC | 3 cut(s) | 217, 485, 1584 |
| Bsp143I | GATC | 4 cut(s) | 35, 628, 984, 1777 |
| Bsp19I | CCATGG | 1 cut(s) | 1402 |
| BspANI | GGCC | 3 cut(s) | 108, 215, 1462 |
| BspCNI | CTCAG | 2 cut(s) | 1804, 1945 |
| BspFNI | CGCG | 2 cut(s) | 311, 1775 |
| BspLI | GGNNCC | 4 cut(s) | 215, 1192, 1218, 1771 |
| BspPI | GGATC | 2 cut(s) | 30, 1785 |
| BspQI | GCTCTTC | 1 cut(s) | 1983 |
| BspT104I | TTCGAA | 2 cut(s) | 503, 1434 |
| BspT107I | GGYRCC | 2 cut(s) | 1190, 1769 |
| BsrBI | CCGCTC | 1 cut(s) | 236 |
| BsrDI | GCAATG | 1 cut(s) | 954 |
| BsrFI | RCCGGY | 1 cut(s) | 510 |
| BsrI | ACTGG | 4 cut(s) | 457, 1540, 1581, 1826 |
| BssAI | RCCGGY | 1 cut(s) | 510 |
| BssECI | CCNNGG | 6 cut(s) | 1212, 1219, 1220, 1402, 1773, 1971 |
| BssMI | GATC | 4 cut(s) | 35, 628, 984, 1777 |
| BssNI | GRCGYC | 2 cut(s) | 231, 1347 |
| BssT1I | CCWWGG | 3 cut(s) | 1212, 1402, 1971 |
| Bst2UI | CCWGG | 1 cut(s) | 1221 |
| Bst4CI | ACNGT | 4 cut(s) | 296, 412, 775, 1723 |
| Bst6I | CTCTTC | 2 cut(s) | 1442, 1983 |
| BstACI | GRCGYC | 2 cut(s) | 231, 1347 |
| BstBAI | YACGTR | 1 cut(s) | 1900 |
| BstBI | TTCGAA | 2 cut(s) | 503, 1434 |
| BstC8I | GCNNGC | 4 cut(s) | 307, 529, 796, 1728 |
| BstDEI | CTNAG | 2 cut(s) | 1812, 1953 |
| BstDSI | CCRYGG | 2 cut(s) | 1402, 1773 |
| BstEII | GGTNACC | 1 cut(s) | 1007 |
| BstF5I | GGATG | 3 cut(s) | 84, 349, 1976 |
| BstFNI | CGCG | 2 cut(s) | 311, 1775 |
| BstH2I | RGCGCY | 1 cut(s) | 471 |
| BstHHI | GCGC | 3 cut(s) | 311, 470, 697 |
| BstKTI | GATC | 4 cut(s) | 38, 631, 987, 1780 |
| BstMAI | GTCTC | 5 cut(s) | 9, 23, 401, 1730, 1741 |
| BstMBI | GATC | 4 cut(s) | 35, 628, 984, 1777 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 285, 587, 935, 944, 1205, 1394 |
| BstNI | CCWGG | 1 cut(s) | 1221 |
| BstNSI | RCATGY | 1 cut(s) | 1593 |
| BstPI | GGTNACC | 1 cut(s) | 1007 |
| BstSCI | CCNGG | 4 cut(s) | 210, 215, 1219, 1310 |
| BstSFI | CTRYAG | 2 cut(s) | 1659, 1719 |
| BstSLI | GKGCMC | 1 cut(s) | 217 |
| BstUI | CGCG | 2 cut(s) | 311, 1775 |
| BstV1I | GCAGC | 2 cut(s) | 1195, 1795 |
| BstV2I | GAAGAC | 1 cut(s) | 1880 |
| BsuRI | GGCC | 3 cut(s) | 108, 215, 1462 |
| BtgI | CCRYGG | 2 cut(s) | 1402, 1773 |
| BtrI | CACGTC | 1 cut(s) | 31 |
| BtsCI | GGATG | 3 cut(s) | 84, 349, 1976 |
| BtsI | GCAGTG | 2 cut(s) | 483, 538 |
| BtsIMutI | CAGTG | 6 cut(s) | 288, 483, 538, 1186, 1288, 1728 |
| Cac8I | GCNNGC | 4 cut(s) | 307, 529, 796, 1728 |
| CaiI | CAGNNNCTG | 1 cut(s) | 130 |
| CfoI | GCGC | 3 cut(s) | 311, 470, 697 |
| Cfr10I | RCCGGY | 1 cut(s) | 510 |
| Cfr13I | GGNCC | 4 cut(s) | 208, 213, 214, 1216 |
| Cfr42I | CCGCGG | 1 cut(s) | 1776 |
| CseI | GACGC | 3 cut(s) | 239, 340, 1336 |
| Csp6I | GTAC | 2 cut(s) | 1300, 1770 |
| CviAII | CATG | 9 cut(s) | 104, 382, 739, 836, 995, 1235, 1403, 1546, 1590 |
| CviQI | GTAC | 2 cut(s) | 1300, 1770 |
| DdeI | CTNAG | 2 cut(s) | 1812, 1953 |
| DpnI | GATC | 4 cut(s) | 37, 630, 986, 1779 |
| DpnII | GATC | 4 cut(s) | 35, 628, 984, 1777 |
| Eam1104I | CTCTTC | 2 cut(s) | 1442, 1983 |
| EarI | CTCTTC | 2 cut(s) | 1442, 1983 |
| Eco130I | CCWWGG | 3 cut(s) | 1212, 1402, 1971 |
| Eco147I | AGGCCT | 1 cut(s) | 1462 |
| Eco24I | GRGCYC | 1 cut(s) | 217 |
| Eco32I | GATATC | 2 cut(s) | 1672, 2004 |
| Eco47I | GGWCC | 2 cut(s) | 208, 1216 |
| Eco47III | AGCGCT | 1 cut(s) | 469 |
| Eco57I | CTGAAG | 1 cut(s) | 2007 |
| Eco88I | CYCGRG | 1 cut(s) | 988 |
| Eco91I | GGTNACC | 1 cut(s) | 1007 |
| EcoO65I | GGTNACC | 1 cut(s) | 1007 |
| EcoRII | CCWGG | 1 cut(s) | 1219 |
| EcoRV | GATATC | 2 cut(s) | 1672, 2004 |
| EcoT14I | CCWWGG | 3 cut(s) | 1212, 1402, 1971 |
| EcoT22I | ATGCAT | 1 cut(s) | 1591 |
| EcoT38I | GRGCYC | 1 cut(s) | 217 |
| ErhI | CCWWGG | 3 cut(s) | 1212, 1402, 1971 |
| Esp3I | CGTCTC | 1 cut(s) | 401 |
| FaeI | CATG | 9 cut(s) | 107, 385, 742, 839, 998, 1238, 1406, 1549, 1593 |
| FatI | CATG | 9 cut(s) | 103, 381, 738, 835, 994, 1234, 1402, 1545, 1589 |
| FauI | CCCGC | 1 cut(s) | 333 |
| FblI | GTMKAC | 1 cut(s) | 159 |
| Fnu4HI | GCNGC | 5 cut(s) | 221, 234, 591, 1209, 1809 |
| FokI | GGATG | 3 cut(s) | 71, 356, 1963 |
| FriOI | GRGCYC | 1 cut(s) | 217 |
| Fsp4HI | GCNGC | 5 cut(s) | 221, 234, 591, 1209, 1809 |
| FspBI | CTAG | 6 cut(s) | 285, 780, 821, 1013, 1731, 1929 |
| FspI | TGCGCA | 1 cut(s) | 696 |
| GlaI | GCGC | 3 cut(s) | 310, 469, 696 |
| GluI | GCNGC | 5 cut(s) | 221, 234, 591, 1209, 1809 |
| GsaI | CCCAGC | 1 cut(s) | 127 |
| GsuI | CTGGAG | 2 cut(s) | 82, 1598 |
| HaeII | RGCGCY | 1 cut(s) | 471 |
| HaeIII | GGCC | 3 cut(s) | 108, 215, 1462 |
| HapII | CCGG | 4 cut(s) | 211, 217, 511, 1311 |
| HgaI | GACGC | 3 cut(s) | 239, 340, 1336 |
| HhaI | GCGC | 3 cut(s) | 311, 470, 697 |
| Hin1I | GRCGYC | 2 cut(s) | 231, 1347 |
| Hin1II | CATG | 9 cut(s) | 107, 385, 742, 839, 998, 1238, 1406, 1549, 1593 |
| Hin6I | GCGC | 3 cut(s) | 309, 468, 695 |
| HinP1I | GCGC | 3 cut(s) | 309, 468, 695 |
| HincII | GTYRAC | 2 cut(s) | 361, 562 |
| HindII | GTYRAC | 2 cut(s) | 361, 562 |
| HindIII | AAGCTT | 1 cut(s) | 1121 |
| HinfI | GANTC | 6 cut(s) | 16, 563, 853, 1037, 1171, 1231 |
| HpaII | CCGG | 4 cut(s) | 211, 217, 511, 1311 |
| HphI | GGTGA | 6 cut(s) | 61, 103, 457, 1391, 1538, 1960 |
| Hpy166II | GTNNAC | 4 cut(s) | 160, 361, 562, 1372 |
| Hpy188I | TCNGA | 6 cut(s) | 9, 35, 356, 375, 818, 2001 |
| Hpy188III | TCNNGA | 6 cut(s) | 99, 1160, 1246, 1426, 1693, 1870 |
| Hpy8I | GTNNAC | 4 cut(s) | 160, 361, 562, 1372 |
| Hpy99I | CGWCG | 3 cut(s) | 140, 233, 356 |
| HpyAV | CCTTC | 4 cut(s) | 599, 1256, 1624, 1819 |
| HpyCH4III | ACNGT | 4 cut(s) | 296, 412, 775, 1723 |
| HpyCH4IV | ACGT | 3 cut(s) | 30, 156, 1899 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 285, 587, 935, 944, 1205, 1394 |
| HpyF3I | CTNAG | 2 cut(s) | 1812, 1953 |
| HpySE526I | ACGT | 3 cut(s) | 30, 156, 1899 |
| Hsp92I | GRCGYC | 2 cut(s) | 231, 1347 |
| Hsp92II | CATG | 9 cut(s) | 107, 385, 742, 839, 998, 1238, 1406, 1549, 1593 |
| HspAI | GCGC | 3 cut(s) | 309, 468, 695 |
| KpnI | GGTACC | 1 cut(s) | 1773 |
| KspI | CCGCGG | 1 cut(s) | 1776 |
| Kzo9I | GATC | 4 cut(s) | 35, 628, 984, 1777 |
| LguI | GCTCTTC | 1 cut(s) | 1983 |
| LmnI | GCTCC | 2 cut(s) | 241, 1579 |
| Lsp1109I | GCAGC | 2 cut(s) | 1195, 1795 |
| LweI | GCATC | 4 cut(s) | 514, 1153, 1456, 1985 |
| MaeI | CTAG | 6 cut(s) | 285, 780, 821, 1013, 1731, 1929 |
| MaeII | ACGT | 3 cut(s) | 30, 156, 1899 |
| MaeIII | GTNAC | 8 cut(s) | 195, 253, 296, 367, 1007, 1471, 1502, 1817 |
| MalI | GATC | 4 cut(s) | 37, 630, 986, 1779 |
| MbiI | CCGCTC | 1 cut(s) | 236 |
| MboI | GATC | 4 cut(s) | 35, 628, 984, 1777 |
| MboII | GAAGA | 8 cut(s) | 820, 862, 1448, 1459, 1858, 1861, 1885, 2000 |
| MhlI | GDGCHC | 3 cut(s) | 217, 485, 1584 |
| MluCI | AATT | 9 cut(s) | 1133, 1200, 1274, 1290, 1439, 1520, 1532, 1798, 2019 |
| MlyI | GAGTC | 2 cut(s) | 25, 557 |
| MmeI | TCCRAC | 5 cut(s) | 99, 334, 594, 841, 1647 |
| Mph1103I | ATGCAT | 1 cut(s) | 1591 |
| MroXI | GAANNNNTTC | 3 cut(s) | 812, 862, 1277 |
| MseI | TTAA | 4 cut(s) | 1119, 1136, 1289, 1710 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1181, 1407 |
| MspA1I | CMGCKG | 1 cut(s) | 1775 |
| MspI | CCGG | 4 cut(s) | 211, 217, 511, 1311 |
| MspR9I | CCNGG | 4 cut(s) | 212, 217, 1221, 1312 |
| Mva1269I | GAATGC | 2 cut(s) | 583, 1702 |
| MvaI | CCWGG | 1 cut(s) | 1221 |
| MvnI | CGCG | 2 cut(s) | 311, 1775 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 285, 587, 935, 944, 1205, 1394 |
| NciI | CCSGG | 3 cut(s) | 212, 217, 1312 |
| NcoI | CCATGG | 1 cut(s) | 1402 |
| NdeII | GATC | 4 cut(s) | 35, 628, 984, 1777 |
| NlaIII | CATG | 9 cut(s) | 107, 385, 742, 839, 998, 1238, 1406, 1549, 1593 |
| NlaIV | GGNNCC | 4 cut(s) | 215, 1192, 1218, 1771 |
| NmuCI | GTSAC | 4 cut(s) | 195, 253, 1471, 1502 |
| NsbI | TGCGCA | 1 cut(s) | 696 |
| NsiI | ATGCAT | 1 cut(s) | 1591 |
| NspI | RCATGY | 1 cut(s) | 1593 |
| NspV | TTCGAA | 2 cut(s) | 503, 1434 |
| PasI | CCCWGGG | 1 cut(s) | 1220 |
| PceI | AGGCCT | 1 cut(s) | 1462 |
| PciSI | GCTCTTC | 1 cut(s) | 1983 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 360 |
| PctI | GAATGC | 2 cut(s) | 583, 1702 |
| PdmI | GAANNNNTTC | 3 cut(s) | 812, 862, 1277 |
| PfeI | GAWTC | 4 cut(s) | 853, 1037, 1171, 1231 |
| PflFI | GACNNNGTC | 1 cut(s) | 251 |
| PfoI | TCCNGGA | 1 cut(s) | 1310 |
| PkrI | GCNGC | 5 cut(s) | 222, 235, 592, 1210, 1810 |
| PleI | GAGTC | 2 cut(s) | 24, 557 |
| PpsI | GAGTC | 2 cut(s) | 24, 557 |
| Ppu21I | YACGTR | 1 cut(s) | 1900 |
| PsiI | TTATAA | 3 cut(s) | 243, 878, 1754 |
| Psp6I | CCWGG | 1 cut(s) | 1219 |
| PspEI | GGTNACC | 1 cut(s) | 1007 |
| PspFI | CCCAGC | 1 cut(s) | 123 |
| PspGI | CCWGG | 1 cut(s) | 1219 |
| PspN4I | GGNNCC | 4 cut(s) | 215, 1192, 1218, 1771 |
| PspOMI | GGGCCC | 1 cut(s) | 213 |
| PspPI | GGNCC | 4 cut(s) | 208, 213, 214, 1216 |
| PstNI | CAGNNNCTG | 1 cut(s) | 130 |
| PsyI | GACNNNGTC | 1 cut(s) | 251 |
| RsaI | GTAC | 2 cut(s) | 1301, 1771 |
| RsaNI | GTAC | 2 cut(s) | 1300, 1770 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1181, 1407 |
| SacII | CCGCGG | 1 cut(s) | 1776 |
| SapI | GCTCTTC | 1 cut(s) | 1983 |
| SaqAI | TTAA | 4 cut(s) | 1119, 1136, 1289, 1710 |
| SatI | GCNGC | 5 cut(s) | 221, 234, 591, 1209, 1809 |
| Sau3AI | GATC | 4 cut(s) | 35, 628, 984, 1777 |
| Sau96I | GGNCC | 4 cut(s) | 208, 213, 214, 1216 |
| SchI | GAGTC | 2 cut(s) | 25, 557 |
| ScrFI | CCNGG | 4 cut(s) | 212, 217, 1221, 1312 |
| SduI | GDGCHC | 3 cut(s) | 217, 485, 1584 |
| SfaNI | GCATC | 4 cut(s) | 514, 1153, 1456, 1985 |
| SfcI | CTRYAG | 2 cut(s) | 1659, 1719 |
| Sfr303I | CCGCGG | 1 cut(s) | 1776 |
| SfuI | TTCGAA | 2 cut(s) | 503, 1434 |
| SgrBI | CCGCGG | 1 cut(s) | 1776 |
| SinI | GGWCC | 2 cut(s) | 208, 1216 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1181, 1407 |
| SmlI | CTYRAG | 4 cut(s) | 391, 1002, 1246, 1625 |
| SmoI | CTYRAG | 4 cut(s) | 391, 1002, 1246, 1625 |
| Sse9I | AATT | 9 cut(s) | 1133, 1200, 1274, 1290, 1439, 1520, 1532, 1798, 2019 |
| SseBI | AGGCCT | 1 cut(s) | 1462 |
| SspI | AATATT | 2 cut(s) | 1318, 1654 |
| SspMI | CTAG | 6 cut(s) | 285, 780, 821, 1013, 1731, 1929 |
| StuI | AGGCCT | 1 cut(s) | 1462 |
| StyD4I | CCNGG | 4 cut(s) | 210, 215, 1219, 1310 |
| StyI | CCWWGG | 3 cut(s) | 1212, 1402, 1971 |
| TaaI | ACNGT | 4 cut(s) | 296, 412, 775, 1723 |
| TaiI | ACGT | 3 cut(s) | 33, 159, 1902 |
| TaqI | TCGA | 7 cut(s) | 135, 151, 228, 503, 757, 856, 1434 |
| TasI | AATT | 9 cut(s) | 1133, 1200, 1274, 1290, 1439, 1520, 1532, 1798, 2019 |
| TatI | WGTACW | 1 cut(s) | 1299 |
| TauI | GCSGC | 3 cut(s) | 223, 236, 593 |
| TfiI | GAWTC | 4 cut(s) | 853, 1037, 1171, 1231 |
| Tru1I | TTAA | 4 cut(s) | 1119, 1136, 1289, 1710 |
| Tru9I | TTAA | 4 cut(s) | 1119, 1136, 1289, 1710 |
| TscAI | CASTG | 6 cut(s) | 295, 483, 538, 1186, 1288, 1728 |
| TseFI | GTSAC | 4 cut(s) | 195, 253, 1471, 1502 |
| TseI | GCWGC | 2 cut(s) | 1208, 1808 |
| Tsp45I | GTSAC | 4 cut(s) | 195, 253, 1471, 1502 |
| TspDTI | ATGAA | 6 cut(s) | 969, 1029, 1122, 1223, 1868, 1904 |
| TspGWI | ACGGA | 2 cut(s) | 861, 954 |
| TspRI | CASTG | 6 cut(s) | 295, 483, 538, 1186, 1288, 1728 |
| Tth111I | GACNNNGTC | 1 cut(s) | 251 |
| VpaK11BI | GGWCC | 2 cut(s) | 208, 1216 |
| XceI | RCATGY | 1 cut(s) | 1593 |
| XmiI | GTMKAC | 1 cut(s) | 159 |
| XmnI | GAANNNNTTC | 3 cut(s) | 812, 862, 1277 |
| XspI | CTAG | 6 cut(s) | 285, 780, 821, 1013, 1731, 1929 |
| Zsp2I | ATGCAT | 1 cut(s) | 1591 |