Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G18840 AT3G18840 |
| fragaria_vesca | FvH4_2g08350 |
| malus_domestica | MD10G1080500.v1.1 |
| prunus_persica | Prupe.8G101800_v2.0.a1 |
| pyrus_communis | pycom10g06370 |
| rosa_chinensis | RchiOBHm_Chr6g0263351 |
| rosa_laevigata | RLG00000014350 RLG00000014352 RLG00000014358 RLG00000014361 |
| rosa_multiflora | Rmu_sc0000565.1_g000003 Rmu_sc0000565.1_g000007 Rmu_sc0003785.1_g000002 |
| rosa_roxburghii | Rroxscaffold_176G00431070 Rroxscaffold_7G00204480 |
| rosa_rugosa | Rorug06G0004400 Rorug06G0004500 Rorug06G0004600 Rorug06G0004900 |
| rosa_samantha | Rh6AG124100 Rh6BG118900 Rh6BG119400 Rh6CG116900 Rh6CG117400 Rh6DG105600 Rh6DG106100 |
| rosa_wichuraiana | Rw6G010650 Rw6G010790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 881, 1563 |
| AccB1I | GGYRCC | 2 cut(s) | 1193, 1772 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1683 |
| AccI | GTMKAC | 1 cut(s) | 162 |
| AccII | CGCG | 1 cut(s) | 537 |
| AciI | CCGC | 7 cut(s) | 237, 479, 513, 626, 746, 1331, 1812 |
| AclWI | GGATC | 1 cut(s) | 1590 |
| AcoI | YGGCCR | 1 cut(s) | 2176 |
| AcsI | RAATTY | 3 cut(s) | 727, 964, 2106 |
| AcuI | CTGAAG | 2 cut(s) | 1234, 2010 |
| AcyI | GRCGYC | 1 cut(s) | 123 |
| AfaI | GTAC | 4 cut(s) | 98, 445, 503, 1304 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1683, 1782 |
| AjnI | CCWGG | 2 cut(s) | 1215, 1222 |
| Alw21I | GWGCWC | 1 cut(s) | 488 |
| Alw26I | GTCTC | 4 cut(s) | 12, 713, 1263, 1744 |
| AlwI | GGATC | 1 cut(s) | 1590 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 10, 133, 343 |
| Ama87I | CYCGRG | 1 cut(s) | 991 |
| AoxI | GGCC | 3 cut(s) | 109, 1463, 2176 |
| ApeKI | GCWGC | 4 cut(s) | 223, 593, 947, 1211 |
| ApoI | RAATTY | 3 cut(s) | 727, 964, 2106 |
| ArsI | GACNNNNNNTTYG | 4 cut(s) | 240, 272, 712, 744 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 134, 1280 |
| AspLEI | GCGC | 1 cut(s) | 537 |
| AspS9I | GGNCC | 2 cut(s) | 1219, 1545 |
| AsuC2I | CCSGG | 2 cut(s) | 220, 2188 |
| AsuHPI | GGTGA | 9 cut(s) | 64, 460, 493, 1394, 1541, 1790, 1937, 1946, 2110 |
| AsuII | TTCGAA | 1 cut(s) | 575 |
| AvaI | CYCGRG | 1 cut(s) | 991 |
| AvaII | GGWCC | 2 cut(s) | 1219, 1545 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1665, 1698 |
| BalI | TGGCCA | 1 cut(s) | 2178 |
| BanI | GGYRCC | 2 cut(s) | 1193, 1772 |
| BanII | GRGCYC | 2 cut(s) | 220, 488 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1014, 1046 |
| BbsI | GAAGAC | 1 cut(s) | 1883 |
| Bbv12I | GWGCWC | 1 cut(s) | 488 |
| BbvCI | CCTCAGC | 1 cut(s) | 1815 |
| BbvI | GCAGC | 4 cut(s) | 235, 605, 959, 1198 |
| BccI | CCATC | 2 cut(s) | 553, 746 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 293, 327 |
| BciT130I | CCWGG | 2 cut(s) | 1217, 1224 |
| BciVI | GTATCC | 1 cut(s) | 1666 |
| BclI | TGATCA | 1 cut(s) | 1621 |
| BcnI | CCSGG | 2 cut(s) | 220, 2188 |
| BcoDI | GTCTC | 4 cut(s) | 12, 713, 1263, 1744 |
| BfaI | CTAG | 4 cut(s) | 783, 1016, 1734, 1757 |
| BfuI | GTATCC | 1 cut(s) | 1666 |
| BisI | GCNGC | 5 cut(s) | 224, 594, 948, 1212, 1812 |
| BlsI | GCNGC | 5 cut(s) | 225, 595, 949, 1213, 1813 |
| Bme1390I | CCNGG | 4 cut(s) | 220, 1217, 1224, 2188 |
| Bme18I | GGWCC | 2 cut(s) | 1219, 1545 |
| BmeT110I | CYCGRG | 1 cut(s) | 991 |
| BmgT120I | GGNCC | 2 cut(s) | 1219, 1545 |
| BmiI | GGNNCC | 3 cut(s) | 1195, 1221, 1774 |
| BmrFI | CCNGG | 4 cut(s) | 220, 1217, 1224, 2188 |
| BmrI | ACTGGG | 1 cut(s) | 71 |
| BmsI | GCATC | 4 cut(s) | 1156, 1459, 1988, 2041 |
| BmuI | ACTGGG | 1 cut(s) | 71 |
| BpiI | GAAGAC | 1 cut(s) | 1883 |
| BpmI | CTGGAG | 1 cut(s) | 85 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1815 |
| Bpu14I | TTCGAA | 1 cut(s) | 575 |
| BpuEI | CTTGAG | 3 cut(s) | 415, 990, 1649 |
| BpuMI | CCSGG | 2 cut(s) | 220, 2188 |
| BsaAI | YACGTR | 1 cut(s) | 1903 |
| BsaHI | GRCGYC | 1 cut(s) | 123 |
| BsaJI | CCNNGG | 6 cut(s) | 838, 1215, 1222, 1223, 1405, 2186 |
| BsaWI | WCCGGW | 1 cut(s) | 649 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 83, 113 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1683, 1782 |
| Bse118I | RCCGGY | 2 cut(s) | 1775, 2205 |
| Bse1I | ACTGG | 4 cut(s) | 66, 1584, 1677, 1829 |
| Bse3DI | GCAATG | 1 cut(s) | 591 |
| BseBI | CCWGG | 2 cut(s) | 1217, 1224 |
| BseDI | CCNNGG | 6 cut(s) | 838, 1215, 1222, 1223, 1405, 2186 |
| BseGI | GGATG | 6 cut(s) | 87, 352, 564, 867, 1979, 2050 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1683, 1782 |
| BseMI | GCAATG | 1 cut(s) | 591 |
| BseMII | CTCAG | 2 cut(s) | 458, 1806 |
| BseNI | ACTGG | 4 cut(s) | 66, 1584, 1677, 1829 |
| BseRI | GAGGAG | 3 cut(s) | 826, 1760, 1782 |
| BseXI | GCAGC | 4 cut(s) | 235, 605, 959, 1198 |
| BsgI | GTGCAG | 2 cut(s) | 719, 1811 |
| Bsh1236I | CGCG | 1 cut(s) | 537 |
| BshFI | GGCC | 3 cut(s) | 111, 1465, 2178 |
| BshNI | GGYRCC | 2 cut(s) | 1193, 1772 |
| BsiHKAI | GWGCWC | 1 cut(s) | 488 |
| BsiHKCI | CYCGRG | 1 cut(s) | 991 |
| BsiSI | CCGG | 5 cut(s) | 220, 650, 1776, 2188, 2206 |
| BslFI | GGGAC | 1 cut(s) | 2137 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1683, 1782 |
| BsmAI | GTCTC | 4 cut(s) | 12, 713, 1263, 1744 |
| BsmFI | GGGAC | 1 cut(s) | 2137 |
| BsmI | GAATGC | 4 cut(s) | 436, 586, 1691, 1705 |
| BsnI | GGCC | 3 cut(s) | 111, 1465, 2178 |
| BsoBI | CYCGRG | 1 cut(s) | 991 |
| Bsp119I | TTCGAA | 1 cut(s) | 575 |
| Bsp1286I | GDGCHC | 2 cut(s) | 220, 488 |
| Bsp143I | GATC | 8 cut(s) | 197, 349, 463, 631, 987, 1582, 1621, 1780 |
| Bsp19I | CCATGG | 2 cut(s) | 838, 1405 |
| BspACI | CCGC | 7 cut(s) | 237, 479, 513, 626, 746, 1331, 1812 |
| BspANI | GGCC | 3 cut(s) | 111, 1465, 2178 |
| BspCNI | CTCAG | 2 cut(s) | 459, 1807 |
| BspFNI | CGCG | 1 cut(s) | 537 |
| BspLI | GGNNCC | 3 cut(s) | 1195, 1221, 1774 |
| BspPI | GGATC | 1 cut(s) | 1590 |
| BspQI | GCTCTTC | 1 cut(s) | 1986 |
| BspT104I | TTCGAA | 1 cut(s) | 575 |
| BspT107I | GGYRCC | 2 cut(s) | 1193, 1772 |
| BsrDI | GCAATG | 1 cut(s) | 591 |
| BsrFI | RCCGGY | 2 cut(s) | 1775, 2205 |
| BsrI | ACTGG | 4 cut(s) | 66, 1584, 1677, 1829 |
| BssAI | RCCGGY | 2 cut(s) | 1775, 2205 |
| BssECI | CCNNGG | 6 cut(s) | 838, 1215, 1222, 1223, 1405, 2186 |
| BssMI | GATC | 8 cut(s) | 197, 349, 463, 631, 987, 1582, 1621, 1780 |
| BssNI | GRCGYC | 1 cut(s) | 123 |
| BssT1I | CCWWGG | 2 cut(s) | 838, 1405 |
| Bst2UI | CCWGG | 2 cut(s) | 1217, 1224 |
| Bst4CI | ACNGT | 4 cut(s) | 448, 667, 1446, 2128 |
| Bst6I | CTCTTC | 2 cut(s) | 1445, 1986 |
| BstACI | GRCGYC | 1 cut(s) | 123 |
| BstBAI | YACGTR | 1 cut(s) | 1903 |
| BstBI | TTCGAA | 1 cut(s) | 575 |
| BstC8I | GCNNGC | 2 cut(s) | 289, 799 |
| BstDEI | CTNAG | 4 cut(s) | 467, 507, 1815, 1975 |
| BstDSI | CCRYGG | 2 cut(s) | 838, 1405 |
| BstEII | GGTNACC | 1 cut(s) | 1010 |
| BstF5I | GGATG | 6 cut(s) | 87, 352, 564, 867, 1979, 2050 |
| BstFNI | CGCG | 1 cut(s) | 537 |
| BstHHI | GCGC | 1 cut(s) | 537 |
| BstKTI | GATC | 8 cut(s) | 200, 352, 466, 634, 990, 1585, 1624, 1783 |
| BstMAI | GTCTC | 4 cut(s) | 12, 713, 1263, 1744 |
| BstMBI | GATC | 8 cut(s) | 197, 349, 463, 631, 987, 1582, 1621, 1780 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 288, 590, 1208, 1397, 1739 |
| BstNI | CCWGG | 2 cut(s) | 1217, 1224 |
| BstNSI | RCATGY | 1 cut(s) | 1596 |
| BstPI | GGTNACC | 1 cut(s) | 1010 |
| BstSCI | CCNGG | 4 cut(s) | 218, 1215, 1222, 2186 |
| BstUI | CGCG | 1 cut(s) | 537 |
| BstV1I | GCAGC | 4 cut(s) | 235, 605, 959, 1198 |
| BstV2I | GAAGAC | 1 cut(s) | 1883 |
| BsuI | GTATCC | 1 cut(s) | 1666 |
| BsuRI | GGCC | 3 cut(s) | 111, 1465, 2178 |
| BtgI | CCRYGG | 2 cut(s) | 838, 1405 |
| BtsCI | GGATG | 6 cut(s) | 87, 352, 564, 867, 1979, 2050 |
| BtsI | GCAGTG | 1 cut(s) | 957 |
| BtsIMutI | CAGTG | 6 cut(s) | 59, 722, 957, 1291, 1643, 1684 |
| Cac8I | GCNNGC | 2 cut(s) | 289, 799 |
| CaiI | CAGNNNCTG | 3 cut(s) | 10, 133, 343 |
| CfoI | GCGC | 1 cut(s) | 537 |
| Cfr10I | RCCGGY | 2 cut(s) | 1775, 2205 |
| Cfr13I | GGNCC | 2 cut(s) | 1219, 1545 |
| CseI | GACGC | 1 cut(s) | 131 |
| Csp6I | GTAC | 4 cut(s) | 97, 444, 502, 1303 |
| CviQI | GTAC | 4 cut(s) | 97, 444, 502, 1303 |
| DdeI | CTNAG | 4 cut(s) | 467, 507, 1815, 1975 |
| DpnI | GATC | 8 cut(s) | 199, 351, 465, 633, 989, 1584, 1623, 1782 |
| DpnII | GATC | 8 cut(s) | 197, 349, 463, 631, 987, 1582, 1621, 1780 |
| DraI | TTTAAA | 2 cut(s) | 820, 1345 |
| EaeI | YGGCCR | 1 cut(s) | 2176 |
| Eam1104I | CTCTTC | 2 cut(s) | 1445, 1986 |
| EarI | CTCTTC | 2 cut(s) | 1445, 1986 |
| EciI | GGCGGA | 1 cut(s) | 761 |
| Ecl136II | GAGCTC | 1 cut(s) | 486 |
| Eco130I | CCWWGG | 2 cut(s) | 838, 1405 |
| Eco147I | AGGCCT | 1 cut(s) | 1465 |
| Eco24I | GRGCYC | 2 cut(s) | 220, 488 |
| Eco32I | GATATC | 2 cut(s) | 1091, 2007 |
| Eco47I | GGWCC | 2 cut(s) | 1219, 1545 |
| Eco53kI | GAGCTC | 1 cut(s) | 486 |
| Eco57I | CTGAAG | 2 cut(s) | 1234, 2010 |
| Eco88I | CYCGRG | 1 cut(s) | 991 |
| Eco91I | GGTNACC | 1 cut(s) | 1010 |
| EcoICRI | GAGCTC | 1 cut(s) | 486 |
| EcoO65I | GGTNACC | 1 cut(s) | 1010 |
| EcoRI | GAATTC | 1 cut(s) | 2106 |
| EcoRII | CCWGG | 2 cut(s) | 1215, 1222 |
| EcoRV | GATATC | 2 cut(s) | 1091, 2007 |
| EcoT14I | CCWWGG | 2 cut(s) | 838, 1405 |
| EcoT22I | ATGCAT | 1 cut(s) | 1594 |
| EcoT38I | GRGCYC | 2 cut(s) | 220, 488 |
| ErhI | CCWWGG | 2 cut(s) | 838, 1405 |
| FaqI | GGGAC | 1 cut(s) | 2137 |
| FauI | CCCGC | 1 cut(s) | 506 |
| FbaI | TGATCA | 1 cut(s) | 1621 |
| FblI | GTMKAC | 1 cut(s) | 162 |
| Fnu4HI | GCNGC | 5 cut(s) | 224, 594, 948, 1212, 1812 |
| FokI | GGATG | 6 cut(s) | 74, 359, 571, 874, 1966, 2057 |
| FriOI | GRGCYC | 2 cut(s) | 220, 488 |
| Fsp4HI | GCNGC | 5 cut(s) | 224, 594, 948, 1212, 1812 |
| FspBI | CTAG | 4 cut(s) | 783, 1016, 1734, 1757 |
| GlaI | GCGC | 1 cut(s) | 536 |
| GluI | GCNGC | 5 cut(s) | 224, 594, 948, 1212, 1812 |
| GsuI | CTGGAG | 1 cut(s) | 85 |
| HaeIII | GGCC | 3 cut(s) | 111, 1465, 2178 |
| HapII | CCGG | 5 cut(s) | 220, 650, 1776, 2188, 2206 |
| HgaI | GACGC | 1 cut(s) | 131 |
| HhaI | GCGC | 1 cut(s) | 537 |
| Hin1I | GRCGYC | 1 cut(s) | 123 |
| Hin6I | GCGC | 1 cut(s) | 535 |
| HinP1I | GCGC | 1 cut(s) | 535 |
| HincII | GTYRAC | 1 cut(s) | 565 |
| HindII | GTYRAC | 1 cut(s) | 565 |
| HindIII | AAGCTT | 2 cut(s) | 1124, 2171 |
| HinfI | GANTC | 5 cut(s) | 566, 1040, 1174, 1234, 2015 |
| HpaII | CCGG | 5 cut(s) | 220, 650, 1776, 2188, 2206 |
| HphI | GGTGA | 9 cut(s) | 64, 460, 493, 1394, 1541, 1790, 1937, 1946, 2110 |
| Hpy166II | GTNNAC | 4 cut(s) | 163, 444, 565, 1375 |
| Hpy188I | TCNGA | 6 cut(s) | 12, 197, 354, 468, 2004, 2112 |
| Hpy188III | TCNNGA | 9 cut(s) | 102, 119, 1086, 1163, 1252, 1696, 1757, 1873, 2036 |
| Hpy8I | GTNNAC | 4 cut(s) | 163, 444, 565, 1375 |
| Hpy99I | CGWCG | 1 cut(s) | 143 |
| HpyAV | CCTTC | 6 cut(s) | 290, 602, 1259, 1627, 1822, 2113 |
| HpyCH4III | ACNGT | 4 cut(s) | 448, 667, 1446, 2128 |
| HpyCH4IV | ACGT | 3 cut(s) | 33, 159, 1902 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 288, 590, 1208, 1397, 1739 |
| HpyF3I | CTNAG | 4 cut(s) | 467, 507, 1815, 1975 |
| HpySE526I | ACGT | 3 cut(s) | 33, 159, 1902 |
| Hsp92I | GRCGYC | 1 cut(s) | 123 |
| HspAI | GCGC | 1 cut(s) | 535 |
| Ksp22I | TGATCA | 1 cut(s) | 1621 |
| Kzo9I | GATC | 8 cut(s) | 197, 349, 463, 631, 987, 1582, 1621, 1780 |
| LguI | GCTCTTC | 1 cut(s) | 1986 |
| LmnI | GCTCC | 1 cut(s) | 813 |
| Lsp1109I | GCAGC | 4 cut(s) | 235, 605, 959, 1198 |
| LweI | GCATC | 4 cut(s) | 1156, 1459, 1988, 2041 |
| MaeI | CTAG | 4 cut(s) | 783, 1016, 1734, 1757 |
| MaeII | ACGT | 3 cut(s) | 33, 159, 1902 |
| MaeIII | GTNAC | 8 cut(s) | 256, 299, 370, 1010, 1029, 1474, 1505, 1943 |
| MalI | GATC | 8 cut(s) | 199, 351, 465, 633, 989, 1584, 1623, 1782 |
| MboI | GATC | 8 cut(s) | 197, 349, 463, 631, 987, 1582, 1621, 1780 |
| MhlI | GDGCHC | 2 cut(s) | 220, 488 |
| MlsI | TGGCCA | 1 cut(s) | 2178 |
| MluNI | TGGCCA | 1 cut(s) | 2178 |
| MlyI | GAGTC | 1 cut(s) | 560 |
| MmeI | TCCRAC | 1 cut(s) | 102 |
| Mox20I | TGGCCA | 1 cut(s) | 2178 |
| Mph1103I | ATGCAT | 1 cut(s) | 1594 |
| MroXI | GAANNNNTTC | 2 cut(s) | 134, 1280 |
| MscI | TGGCCA | 1 cut(s) | 2178 |
| MslI | CAYNNNNRTG | 2 cut(s) | 1184, 1410 |
| Msp20I | TGGCCA | 1 cut(s) | 2178 |
| MspA1I | CMGCKG | 1 cut(s) | 1814 |
| MspI | CCGG | 5 cut(s) | 220, 650, 1776, 2188, 2206 |
| MspR9I | CCNGG | 4 cut(s) | 220, 1217, 1224, 2188 |
| Mva1269I | GAATGC | 4 cut(s) | 436, 586, 1691, 1705 |
| MvaI | CCWGG | 2 cut(s) | 1217, 1224 |
| MvnI | CGCG | 1 cut(s) | 537 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 288, 590, 1208, 1397, 1739 |
| NciI | CCSGG | 2 cut(s) | 220, 2188 |
| NcoI | CCATGG | 2 cut(s) | 838, 1405 |
| NdeII | GATC | 8 cut(s) | 197, 349, 463, 631, 987, 1582, 1621, 1780 |
| NlaIV | GGNNCC | 3 cut(s) | 1195, 1221, 1774 |
| NmuCI | GTSAC | 4 cut(s) | 256, 1474, 1505, 1943 |
| NsiI | ATGCAT | 1 cut(s) | 1594 |
| NspI | RCATGY | 1 cut(s) | 1596 |
| NspV | TTCGAA | 1 cut(s) | 575 |
| PasI | CCCWGGG | 1 cut(s) | 1223 |
| PceI | AGGCCT | 1 cut(s) | 1465 |
| PciSI | GCTCTTC | 1 cut(s) | 1986 |
| PctI | GAATGC | 4 cut(s) | 436, 586, 1691, 1705 |
| PdmI | GAANNNNTTC | 2 cut(s) | 134, 1280 |
| PfeI | GAWTC | 4 cut(s) | 1040, 1174, 1234, 2015 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1683 |
| PkrI | GCNGC | 5 cut(s) | 225, 595, 949, 1213, 1813 |
| PleI | GAGTC | 1 cut(s) | 560 |
| PpsI | GAGTC | 1 cut(s) | 560 |
| Ppu21I | YACGTR | 1 cut(s) | 1903 |
| PsiI | TTATAA | 2 cut(s) | 881, 1563 |
| Psp124BI | GAGCTC | 1 cut(s) | 488 |
| Psp6I | CCWGG | 2 cut(s) | 1215, 1222 |
| PspEI | GGTNACC | 1 cut(s) | 1010 |
| PspGI | CCWGG | 2 cut(s) | 1215, 1222 |
| PspN4I | GGNNCC | 3 cut(s) | 1195, 1221, 1774 |
| PspPI | GGNCC | 2 cut(s) | 1219, 1545 |
| PstNI | CAGNNNCTG | 3 cut(s) | 10, 133, 343 |
| RsaI | GTAC | 4 cut(s) | 98, 445, 503, 1304 |
| RsaNI | GTAC | 4 cut(s) | 97, 444, 502, 1303 |
| RseI | CAYNNNNRTG | 2 cut(s) | 1184, 1410 |
| SacI | GAGCTC | 1 cut(s) | 488 |
| SapI | GCTCTTC | 1 cut(s) | 1986 |
| SatI | GCNGC | 5 cut(s) | 224, 594, 948, 1212, 1812 |
| Sau3AI | GATC | 8 cut(s) | 197, 349, 463, 631, 987, 1582, 1621, 1780 |
| Sau96I | GGNCC | 2 cut(s) | 1219, 1545 |
| SchI | GAGTC | 1 cut(s) | 560 |
| ScrFI | CCNGG | 4 cut(s) | 220, 1217, 1224, 2188 |
| SduI | GDGCHC | 2 cut(s) | 220, 488 |
| SfaNI | GCATC | 4 cut(s) | 1156, 1459, 1988, 2041 |
| SfuI | TTCGAA | 1 cut(s) | 575 |
| SinI | GGWCC | 2 cut(s) | 1219, 1545 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 1184, 1410 |
| SmlI | CTYRAG | 3 cut(s) | 394, 1005, 1628 |
| SmoI | CTYRAG | 3 cut(s) | 394, 1005, 1628 |
| SseBI | AGGCCT | 1 cut(s) | 1465 |
| SsiI | CCGC | 7 cut(s) | 237, 479, 513, 626, 746, 1331, 1812 |
| SspI | AATATT | 1 cut(s) | 1321 |
| SspMI | CTAG | 4 cut(s) | 783, 1016, 1734, 1757 |
| SstI | GAGCTC | 1 cut(s) | 488 |
| StuI | AGGCCT | 1 cut(s) | 1465 |
| StyD4I | CCNGG | 4 cut(s) | 218, 1215, 1222, 2186 |
| StyI | CCWWGG | 2 cut(s) | 838, 1405 |
| TaaI | ACNGT | 4 cut(s) | 448, 667, 1446, 2128 |
| TaiI | ACGT | 3 cut(s) | 36, 162, 1905 |
| TaqI | TCGA | 3 cut(s) | 138, 231, 575 |
| TatI | WGTACW | 3 cut(s) | 96, 501, 1302 |
| TauI | GCSGC | 1 cut(s) | 1814 |
| TfiI | GAWTC | 4 cut(s) | 1040, 1174, 1234, 2015 |
| TscAI | CASTG | 6 cut(s) | 66, 729, 957, 1291, 1650, 1684 |
| TseFI | GTSAC | 4 cut(s) | 256, 1474, 1505, 1943 |
| TseI | GCWGC | 4 cut(s) | 223, 593, 947, 1211 |
| Tsp45I | GTSAC | 4 cut(s) | 256, 1474, 1505, 1943 |
| TspDTI | ATGAA | 7 cut(s) | 932, 972, 1032, 1226, 1871, 1907, 2183 |
| TspGWI | ACGGA | 2 cut(s) | 864, 1649 |
| TspRI | CASTG | 6 cut(s) | 66, 729, 957, 1291, 1650, 1684 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1683 |
| VpaK11BI | GGWCC | 2 cut(s) | 1219, 1545 |
| XapI | RAATTY | 3 cut(s) | 727, 964, 2106 |
| XbaI | TCTAGA | 1 cut(s) | 1756 |
| XceI | RCATGY | 1 cut(s) | 1596 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 409 |
| XmiI | GTMKAC | 1 cut(s) | 162 |
| XmnI | GAANNNNTTC | 2 cut(s) | 134, 1280 |
| XspI | CTAG | 4 cut(s) | 783, 1016, 1734, 1757 |
| Zsp2I | ATGCAT | 1 cut(s) | 1594 |