Rorug06G0004600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0005291
Physical Location & Seq
Reverse (-)
641006 .. 644648
3643 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0004600.1

Sequence Viewer

Length: 3207 bp
ATGAGCACAGAGAGCTCTTCACCTCCTCGGTGGAAATATGATGTCTTTTTGAGTTTTAGAGGCGAGGATACTCGAAAGGGTTTCACAGACCATCTATACACTGCATTGGATGATAAAGGAATCACAACTTTCAGGGATGATCCTGAGCTTCACAAAGGGGAAGATATTTGTCCAGCACTTTTTGCTGCAATTAAAGAATCGAGATTTGCTCTCATTGTTCTCTCACAAAATTATGCATCGTCGACATGGTGCTTGGAGGAACTTGTCAGAATTCTTAAATGTATGAAGGCAAGAAAAGCTGTGCTGCCAATTTTTTATGATGTTGATCCCTCTGTTGTACGAAAGCAAACAGGGAGTTTTGGTGAAGCCTTTGCTAATCATGAAGAAAGGTTTAGCGATGACAAGGAGAAAGTGCGGAGGTGGAGATCTGCATTAACTGAAGTGGCAAGTTTCTCAGGGTGGAATTCAAAGGAATGGTATGAATCAAAGCTCATTAGAGATATTGTTGAAGATATATGTAAAAGATTGCAACCTACATCATACAGTTATGCAGAAAATCTAGTTGGAATTTACTCAAGATTGCATCCAGTTAATTTGCTTTTAGATGTAGGGGTGGATGACGTCCGCTTCATTGGGATATGGGGAATGGGCGGGATTGGTAAGACAACTATGGTAAGAGCGGTGTATGAGAGAATCTCTCATGAATTTGAAGTTAGCTTCCTTCTTACCGATGTTAGAGATTCCGTTGAAAGAAGTGGTCTCCTAAATCTACAAAAGCAACTTCTCTCTGGGATTTGGACAAAAATGGCTAACATATCAGACCTTCATGAAGGAGCCGCCATAATGAGGAGGTTGTTAGGTCACAAAAAGGTTCTTCTGATTCTTGATGATGTGAACCATTCAAACCATTTGAAATATTTGGCAGGAAGTGAAGAGTGGTTTGGTTCAGGGAGTAGAGTTCTCATCACAACTAGAAATGAGCGTTTGTTGATCGAACATGGAGTAGAGAGAAGATTGAAGGTTGAGGAATTTAATAATGAGGATTCTCTTCAGCTTTTCAGCCAGAAAGCATTCAAAAGAGATTACCCTGAAGAAGATTTTCTTGGTTTGTCTAAATCTGTTATATATTATGCCAAAGGTCTCCCTTTAGCTCTTGAAGTACTGGGTTCTTTTTTGTATAAAAGAGATCTAAGTGAATGGAACAGTGAATTGGGAAAACTAGGAAGAGTTTATAACTTGGAAATTTTTGACATACTTAAAACTAGTTATGATGGTCTAGATGATGAAGAGAAGAAAATATTCCTAGACATTTCATGCTTCTTTTGTGGAGAGGACAAAGATAGAGTAACAGAAATACTTAAAAGTTGCGATGTTTCTGCGATTATTGGAATAAAAGTTCTTATGGAAAGATCTCTCTTGACTGTTTTATACGGAAGACTGTGGATGCACAATTTGCTCCAAGAAATGGGTCGGGAAATTGTGCGCCGGGAATCTACTAATGAGCCAGGCAGGCGTAGTAGGTTATGGCTTCCTGAAGACGTCAAACATGTCTTGACCAAAAATACTGGAACAGAAGCAATAGAAGGCATTGTTCTGGACTCAACTGAGCTTGGAGTAAACGTGAGGGTGAATGCTAAATCCTTTTCGATGATGAACAGATTGAGATACCTTGTCATTAAGAATGGGAACCTACCGAATGGGCTTGAATGTCTTCCTGATAGTTTACGGATTCTTAACTGGACTGGGTATCCCTCGAAATCTCTCCCGTTGCATTTCAACCCTGAGAAGCTACTAGAACTTAACATGTGCCATAGTTGCATTGAACAGTTTCCGTTGGAAATAGAGCCTTTATACAATCTGAAAACCGTTAAACTCAGCAACTCATTGAATCTTGTCAACACCCCAAACTTTAAAGGTATGCCACATCTTGAGGTTCTGATCTTAGAAGGTTGTATGAGACTGTATGAGGTTGACCCAGGAATTGAAGTGCTTGACAAACTTACGATGCTGAACTTAGAAGATTGCAAGAATCTCGTGCATTTTGCAAGCAGTGTACGTGGCTTAAAATCTCTCAAAGTTCTCAATCTTTCTGGTTGCTCAAAGCTTATAAAACTACCAGATGACATGGGTCATTTGGAAAGGTTGGAGGAGCTTCATGTGAATGGCACTGGCATAAGAGAATTACCTTCCTCTAGTGGAATGCTTGAAAGACTTCCTCTGCTGAAAATGGAAGATTGCAAACATCTTGTGCGTCTTCCAAGCAGTGTAGGTGGCTTAAAATCTCTCAAAGTTGTTAATATTTCTGGTTGCTCAAAGCTTGACAAATTGCCAGAGGAGTTGGGCCATATAGCGTGTTTGGAAGAGGTTGATGCGAGTGAGACTTCTATACGAGAACTACCTTGCTCAATTGGCATGCTTGAAGGACTCGTTTCTATGTCCTTGAGAGATTGCAAACATCTTGTATGTCTTCCAAGCAGTGTAGGTGGCTTAAAATCTGTCAAAGATCTCAATCTTTCTGGTTGCTCAAGGCTTGACAAATTGCCAGAGGAGTTGGGCTATATGGCGTGTTTAAAAGAGGTTGATGCGAGTGGGACTTCTATAAGAGAACTACCTTGCTCAATTGGCTTGCTTGAAGGACTCGTTTCTATGTCCTTGAGAGATTGCAAACATCTTGTATGTCTTCCAAGCAGTGTAGGTGGCTTAAAATCTCTCAAATATCTCAATCTTTCTGGTTGCTCAAATCTTGATAAATTGCCAGATGAGTTGGGTCTTGTTGCCTGTTTGGAGAAGCTTGATGTGAGTGGAAGTGACATAAGAGAAGTGCCCTCCGTTATTGGTCTTTTGAAAAACCTCAAAGAATTATATCTTGGTGGATGTAAGGGGCAATCACCTAAATCATGGAATATGATGTTCAACCCTTTTCAGTTATTTCGAAAAAGAAGGCACATTCCGGCAGGATTGTCGTTGGCTAGTTTGTCTGGTTTGCATTCATTAACCAAACTGGATCTAAGTGACTGCAATCTTTCTGAAGAAGCGATCCCCAGTGATTTTGGATGCTTATCTTCATTAATAGAATTAAATTTGAGCAAAAATCAGTTTGTTAGACTACCCGACAGCATCGGCCAACTCTCTAGACTTGAAAGACTTAAGTTGAATTGGTGCGGCAAACTTCAGACATTACCAAAGCTTCCATCTAAGGCCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

1068

Amino Acids

120.1

Weight (kDa)

6.44

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 12 - 188 6.9e-55 TIR domain
TIR_2 PF13676 15 - 112 8e-15 TIR domain
NB-ARC PF00931 206 - 360 2.5e-20 NB-ARC domain
WHD_ROQ1 PF23282 428 - 498 2.4e-18 Disease resistance protein Roq1-like, winged-helix domain
LRR_14 PF23598 666 - 767 1e-12 Leucine-rich repeat region
LRR_13 PF23286 688 - 773 9.7e-07 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_13 PF23286 759 - 844 2.1e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 772 - 839 4.7e-07 Leucine-rich repeat region
LRR_14 PF23598 827 - 908 1.9e-08 Leucine-rich repeat region
LRR_13 PF23286 832 - 915 4.1e-08 Disease resistance protein RPS4B-like, leucine-rich repeats
LRR_14 PF23598 885 - 960 5.6e-10 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1233, 2108
AatII GACGTC 2 cut(s) 624, 1542
AccB7I CCANNNNNTGG 1 cut(s) 1465
AccBSI CCGCTC 1 cut(s) 680
AccI GTMKAC 1 cut(s) 242
AciI CCGC 6 cut(s) 415, 625, 651, 680, 837, 3162
AclWI GGATC 4 cut(s) 134, 320, 3012, 3031
AcoI YGGCCR 1 cut(s) 3121
AcsI RAATTY 7 cut(s) 270, 463, 567, 704, 1028, 1242, 3079
AcuI CTGAAG 6 cut(s) 459, 1034, 1110, 1554, 3048, 3155
AcyI GRCGYC 2 cut(s) 621, 1539
AfaI GTAC 3 cut(s) 339, 1161, 2055
AfiI CCNNNNNNNGG 2 cut(s) 846, 1465
AflII CTTAAG 1 cut(s) 3146
AflIII ACRYGT 2 cut(s) 1546, 1803
AhlI ACTAGT 1 cut(s) 1262
AjnI CCWGG 2 cut(s) 1504, 1975
AloI GAACNNNNNNTCC 2 cut(s) 1380, 1412
Alw21I GWGCWC 2 cut(s) 8, 17
Alw26I GTCTC 4 cut(s) 764, 1145, 1951, 2372
AlwI GGATC 4 cut(s) 134, 320, 3012, 3031
AoxI GGCC 3 cut(s) 2341, 3121, 3198
ApeKI GCWGC 2 cut(s) 185, 304
ApoI RAATTY 7 cut(s) 270, 463, 567, 704, 1028, 1242, 3079
AseI ATTAAT 1 cut(s) 3068
Asp700I GAANNNNTTC 6 cut(s) 1070, 1098, 1298, 1710, 1827, 2211
AspLEI GCGC 1 cut(s) 1485
AspS9I GGNCC 1 cut(s) 2341
AsuC2I CCSGG 1 cut(s) 1487
AsuHPI GGTGA 4 cut(s) 12, 374, 1639, 2880
AsuII TTCGAA 1 cut(s) 2932
BaeGI GKGCMC 1 cut(s) 2826
BanII GRGCYC 1 cut(s) 17
BauI CACGAG 1 cut(s) 2033
BbsI GAAGAC 6 cut(s) 1441, 1542, 1703, 2246, 2459, 2672
Bbv12I GWGCWC 2 cut(s) 8, 17
BbvI GCAGC 2 cut(s) 172, 291
BccI CCATC 3 cut(s) 99, 1265, 3199
BcgI CGANNNNNNTGC 6 cut(s) 1358, 1392, 2014, 2048, 2943, 2977
BciT130I CCWGG 2 cut(s) 1506, 1977
BciVI GTATCC 2 cut(s) 61, 1758
BcnI CCSGG 1 cut(s) 1487
BcoDI GTCTC 4 cut(s) 764, 1145, 1951, 2372
BcuI ACTAGT 1 cut(s) 1262
BfrI CTTAAG 1 cut(s) 3146
BfuI GTATCC 2 cut(s) 61, 1758
BglI GCCNNNNNGGC 1 cut(s) 1510
BglII AGATCT 4 cut(s) 425, 1186, 1409, 2503
BisI GCNGC 4 cut(s) 186, 305, 837, 3163
BlsI GCNGC 4 cut(s) 187, 306, 838, 3164
BmcAI AGTACT 1 cut(s) 1161
Bme1390I CCNGG 3 cut(s) 1487, 1506, 1977
BmgT120I GGNCC 1 cut(s) 2341
BmiI GGNNCC 2 cut(s) 835, 1688
BmrFI CCNGG 3 cut(s) 1487, 1506, 1977
BmrI ACTGGG 3 cut(s) 1172, 1752, 3036
BmsI GCATC 8 cut(s) 245, 592, 1434, 1995, 2359, 2572, 3044, 3126
BmuI ACTGGG 3 cut(s) 1172, 1752, 3036
BoxI GACNNNNGTC 1 cut(s) 2127
BpiI GAAGAC 6 cut(s) 1441, 1542, 1703, 2246, 2459, 2672
BplI GAGNNNNNCTC 6 cut(s) 193, 225, 680, 712, 682, 714
Bpu10I CCTNAGC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 2932
BpuEI CTTGAG 5 cut(s) 559, 1949, 2461, 2509, 2674
BpuMI CCSGG 1 cut(s) 1487
BsaAI YACGTR 1 cut(s) 2057
BsaBI GATNNNNATC 3 cut(s) 324, 2508, 3058
BsaHI GRCGYC 2 cut(s) 621, 1539
BsaI GGTCTC 2 cut(s) 764, 1145
BsaJI CCNNGG 2 cut(s) 26, 1975
BsaXI ACNNNNNCTCC 4 cut(s) 346, 376, 1605, 1635
Bsc4I CCNNNNNNNGG 2 cut(s) 846, 1465
Bse1I ACTGG 8 cut(s) 587, 1167, 1570, 1742, 1747, 2173, 3006, 3042
Bse8I GATNNNNATC 3 cut(s) 324, 2508, 3058
BseBI CCWGG 2 cut(s) 1506, 1977
BseDI CCNNGG 2 cut(s) 26, 1975
BseGI GGATG 7 cut(s) 115, 142, 583, 622, 1449, 2879, 3059
BseJI GATNNNNATC 3 cut(s) 324, 2508, 3058
BseLI CCNNNNNNNGG 2 cut(s) 846, 1465
BseMII CTCAG 5 cut(s) 135, 468, 1596, 1773, 1888
BseNI ACTGG 8 cut(s) 587, 1167, 1570, 1742, 1747, 2173, 3006, 3042
BseRI GAGGAG 5 cut(s) 15, 862, 2162, 2348, 2561
BseSI GKGCMC 1 cut(s) 2826
BseXI GCAGC 2 cut(s) 172, 291
BshFI GGCC 3 cut(s) 2343, 3123, 3200
BsiHKAI GWGCWC 2 cut(s) 8, 17
BsiSI CCGG 2 cut(s) 1486, 2951
BslFI GGGAC 1 cut(s) 2605
BslI CCNNNNNNNGG 2 cut(s) 846, 1465
BsmAI GTCTC 4 cut(s) 764, 1145, 1951, 2372
BsmFI GGGAC 1 cut(s) 2605
BsmI GAATGC 4 cut(s) 1070, 1636, 2205, 2986
BsnI GGCC 3 cut(s) 2343, 3123, 3200
Bso31I GGTCTC 2 cut(s) 764, 1145
Bsp119I TTCGAA 1 cut(s) 2932
Bsp1286I GDGCHC 3 cut(s) 8, 17, 2826
BspACI CCGC 6 cut(s) 415, 625, 651, 680, 837, 3162
BspANI GGCC 3 cut(s) 2343, 3123, 3200
BspCNI CTCAG 5 cut(s) 136, 467, 1597, 1774, 1887
BspHI TCATGA 3 cut(s) 379, 700, 826
BspLI GGNNCC 2 cut(s) 835, 1688
BspPI GGATC 4 cut(s) 134, 320, 3012, 3031
BspQI GCTCTTC 1 cut(s) 22
BspT104I TTCGAA 1 cut(s) 2932
BspTI CTTAAG 1 cut(s) 3146
BspTNI GGTCTC 2 cut(s) 764, 1145
BsrBI CCGCTC 1 cut(s) 680
BsrI ACTGG 8 cut(s) 587, 1167, 1570, 1742, 1747, 2173, 3006, 3042
BssECI CCNNGG 2 cut(s) 26, 1975
BssNI GRCGYC 2 cut(s) 621, 1539
BssSI CACGAG 1 cut(s) 2033
Bst2BI CACGAG 1 cut(s) 2033
Bst2UI CCWGG 2 cut(s) 1506, 1977
Bst4CI ACNGT 7 cut(s) 545, 1205, 1423, 1440, 1827, 1867, 1962
Bst6I CTCTTC 6 cut(s) 22, 927, 1053, 1219, 1281, 2355
BstACI GRCGYC 2 cut(s) 621, 1539
BstAFI CTTAAG 1 cut(s) 3146
BstAPI GCANNNNNTGC 2 cut(s) 182, 1453
BstBAI YACGTR 1 cut(s) 2057
BstBI TTCGAA 1 cut(s) 2932
BstC8I GCNNGC 4 cut(s) 1511, 2047, 2414, 2627
BstF5I GGATG 7 cut(s) 115, 142, 583, 622, 1449, 2879, 3059
BstHHI GCGC 1 cut(s) 1485
BstMAI GTCTC 4 cut(s) 764, 1145, 1951, 2372
BstMWI GCNNNNNNNGC 8 cut(s) 12, 182, 296, 1453, 1510, 1815, 2409, 2622
BstNI CCWGG 2 cut(s) 1506, 1977
BstNSI RCATGY 3 cut(s) 1550, 1807, 2416
BstPAI GACNNNNGTC 1 cut(s) 2127
BstSCI CCNGG 3 cut(s) 1485, 1504, 1975
BstSLI GKGCMC 1 cut(s) 2826
BstV1I GCAGC 2 cut(s) 172, 291
BstV2I GAAGAC 6 cut(s) 1441, 1542, 1703, 2246, 2459, 2672
BstX2I RGATCY 5 cut(s) 425, 1186, 1409, 2503, 3004
BstYI RGATCY 5 cut(s) 425, 1186, 1409, 2503, 3004
BsuI GTATCC 2 cut(s) 61, 1758
BsuRI GGCC 3 cut(s) 2343, 3123, 3200
BtgZI GCGATG 2 cut(s) 411, 1383
BtsCI GGATG 7 cut(s) 115, 142, 583, 622, 1449, 2879, 3059
BtsI GCAGTG 5 cut(s) 99, 2056, 2269, 2482, 2695
BtsIMutI CAGTG 8 cut(s) 99, 1210, 2056, 2166, 2269, 2482, 2695, 3049
Cac8I GCNNGC 4 cut(s) 1511, 2047, 2414, 2627
CciI TCATGA 3 cut(s) 379, 700, 826
CfoI GCGC 1 cut(s) 1485
Cfr13I GGNCC 1 cut(s) 2341
CseI GACGC 1 cut(s) 2240
Csp6I GTAC 3 cut(s) 338, 1160, 2054
CviQI GTAC 3 cut(s) 338, 1160, 2054
DraI TTTAAA 2 cut(s) 1912, 2571
EaeI YGGCCR 1 cut(s) 3121
Eam1104I CTCTTC 6 cut(s) 22, 927, 1053, 1219, 1281, 2355
EarI CTCTTC 6 cut(s) 22, 927, 1053, 1219, 1281, 2355
Ecl136II GAGCTC 1 cut(s) 15
Eco24I GRGCYC 1 cut(s) 17
Eco31I GGTCTC 2 cut(s) 764, 1145
Eco53kI GAGCTC 1 cut(s) 15
Eco57I CTGAAG 6 cut(s) 459, 1034, 1110, 1554, 3048, 3155
EcoICRI GAGCTC 1 cut(s) 15
EcoRI GAATTC 2 cut(s) 270, 463
EcoRII CCWGG 2 cut(s) 1504, 1975
EcoT22I ATGCAT 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 17
FalI AAGNNNNNCTT 2 cut(s) 1086, 1118
FaqI GGGAC 1 cut(s) 2605
FauI CCCGC 1 cut(s) 644
FblI GTMKAC 1 cut(s) 242
Fnu4HI GCNGC 4 cut(s) 186, 305, 837, 3163
FokI GGATG 7 cut(s) 122, 149, 570, 629, 1456, 2886, 3066
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 4 cut(s) 186, 305, 837, 3163
GlaI GCGC 1 cut(s) 1484
GluI GCNGC 4 cut(s) 186, 305, 837, 3163
HaeIII GGCC 3 cut(s) 2343, 3123, 3200
HapII CCGG 2 cut(s) 1486, 2951
HgaI GACGC 1 cut(s) 2240
HhaI GCGC 1 cut(s) 1485
Hin1I GRCGYC 2 cut(s) 621, 1539
Hin6I GCGC 1 cut(s) 1483
HinP1I GCGC 1 cut(s) 1483
HincII GTYRAC 3 cut(s) 243, 1897, 1972
HindII GTYRAC 3 cut(s) 243, 1897, 1972
HindIII AAGCTT 4 cut(s) 2102, 2315, 2789, 3185
HpaII CCGG 2 cut(s) 1486, 2951
HphI GGTGA 4 cut(s) 12, 374, 1639, 2880
Hpy166II GTNNAC 7 cut(s) 243, 895, 1618, 1724, 1897, 1972, 2054
Hpy188I TCNGA 7 cut(s) 269, 820, 879, 1860, 1938, 3028, 3174
Hpy8I GTNNAC 7 cut(s) 243, 895, 1618, 1724, 1897, 1972, 2054
Hpy99I CGWCG 1 cut(s) 244
HpyCH4III ACNGT 7 cut(s) 545, 1205, 1423, 1440, 1827, 1867, 1962
HpyCH4IV ACGT 4 cut(s) 621, 1539, 1620, 2056
HpyF10VI GCNNNNNNNGC 8 cut(s) 12, 182, 296, 1453, 1510, 1815, 2409, 2622
HpySE526I ACGT 4 cut(s) 621, 1539, 1620, 2056
Hsp92I GRCGYC 2 cut(s) 621, 1539
HspAI GCGC 1 cut(s) 1483
LguI GCTCTTC 1 cut(s) 22
LmnI GCTCC 3 cut(s) 833, 1461, 2149
Lsp1109I GCAGC 2 cut(s) 172, 291
LweI GCATC 8 cut(s) 245, 592, 1434, 1995, 2359, 2572, 3044, 3126
MaeII ACGT 4 cut(s) 621, 1539, 1620, 2056
MaeIII GTNAC 4 cut(s) 860, 1345, 2807, 3011
MbiI CCGCTC 1 cut(s) 680
MfeI CAATTG 2 cut(s) 2406, 2619
MflI RGATCY 5 cut(s) 425, 1186, 1409, 2503, 3004
MhlI GDGCHC 3 cut(s) 8, 17, 2826
MlyI GAGTC 3 cut(s) 1592, 2418, 2631
MmeI TCCRAC 3 cut(s) 544, 1815, 2124
Mph1103I ATGCAT 1 cut(s) 238
MroXI GAANNNNTTC 6 cut(s) 1070, 1098, 1298, 1710, 1827, 2211
MslI CAYNNNNRTG 1 cut(s) 2160
MspCI CTTAAG 1 cut(s) 3146
MspI CCGG 2 cut(s) 1486, 2951
MspR9I CCNGG 3 cut(s) 1487, 1506, 1977
MunI CAATTG 2 cut(s) 2406, 2619
Mva1269I GAATGC 4 cut(s) 1070, 1636, 2205, 2986
MvaI CCWGG 2 cut(s) 1506, 1977
MwoI GCNNNNNNNGC 8 cut(s) 12, 182, 296, 1453, 1510, 1815, 2409, 2622
NciI CCSGG 1 cut(s) 1487
NlaIV GGNNCC 2 cut(s) 835, 1688
NmuCI GTSAC 3 cut(s) 860, 2807, 3011
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 3 cut(s) 1550, 1807, 2416
NspV TTCGAA 1 cut(s) 2932
PaeI GCATGC 1 cut(s) 2416
PagI TCATGA 3 cut(s) 379, 700, 826
PciI ACATGT 2 cut(s) 1546, 1803
PciSI GCTCTTC 1 cut(s) 22
PctI GAATGC 4 cut(s) 1070, 1636, 2205, 2986
PdmI GAANNNNTTC 6 cut(s) 1070, 1098, 1298, 1710, 1827, 2211
PflMI CCANNNNNTGG 1 cut(s) 1465
PkrI GCNGC 4 cut(s) 187, 306, 838, 3164
PleI GAGTC 3 cut(s) 1592, 2418, 2631
PpsI GAGTC 3 cut(s) 1592, 2418, 2631
Ppu21I YACGTR 1 cut(s) 2057
PscI ACATGT 2 cut(s) 1546, 1803
PshAI GACNNNNGTC 1 cut(s) 2127
PshBI ATTAAT 1 cut(s) 3068
PsiI TTATAA 2 cut(s) 1233, 2108
Psp124BI GAGCTC 1 cut(s) 17
Psp6I CCWGG 2 cut(s) 1504, 1975
PspGI CCWGG 2 cut(s) 1504, 1975
PspN4I GGNNCC 2 cut(s) 835, 1688
PspPI GGNCC 1 cut(s) 2341
PsuI RGATCY 5 cut(s) 425, 1186, 1409, 2503, 3004
RsaI GTAC 3 cut(s) 339, 1161, 2055
RsaNI GTAC 3 cut(s) 338, 1160, 2054
RseI CAYNNNNRTG 1 cut(s) 2160
SacI GAGCTC 1 cut(s) 17
SalI GTCGAC 1 cut(s) 241
SapI GCTCTTC 1 cut(s) 22
SatI GCNGC 4 cut(s) 186, 305, 837, 3163
Sau96I GGNCC 1 cut(s) 2341
ScaI AGTACT 1 cut(s) 1161
SchI GAGTC 3 cut(s) 1592, 2418, 2631
ScrFI CCNGG 3 cut(s) 1487, 1506, 1977
SduI GDGCHC 3 cut(s) 8, 17, 2826
SfaNI GCATC 8 cut(s) 245, 592, 1434, 1995, 2359, 2572, 3044, 3126
SfuI TTCGAA 1 cut(s) 2932
SmiMI CAYNNNNRTG 1 cut(s) 2160
SmlI CTYRAG 6 cut(s) 574, 1928, 2440, 2524, 2653, 3146
SmoI CTYRAG 6 cut(s) 574, 1928, 2440, 2524, 2653, 3146
SpeI ACTAGT 1 cut(s) 1262
SphI GCATGC 1 cut(s) 2416
SsiI CCGC 6 cut(s) 415, 625, 651, 680, 837, 3162
SspI AATATT 3 cut(s) 917, 1299, 2299
SstI GAGCTC 1 cut(s) 17
StyD4I CCNGG 3 cut(s) 1485, 1504, 1975
TaaI ACNGT 7 cut(s) 545, 1205, 1423, 1440, 1827, 1867, 1962
TaiI ACGT 4 cut(s) 624, 1542, 1623, 2059
TaqI TCGA 7 cut(s) 73, 200, 242, 993, 1646, 1754, 2932
TatI WGTACW 1 cut(s) 1159
TauI GCSGC 2 cut(s) 839, 3165
TscAI CASTG 8 cut(s) 106, 1210, 2056, 2173, 2269, 2482, 2695, 3049
TseFI GTSAC 3 cut(s) 860, 2807, 3011
TseI GCWGC 2 cut(s) 185, 304
Tsp45I GTSAC 3 cut(s) 860, 2807, 3011
TspGWI ACGGA 5 cut(s) 733, 1446, 1741, 1821, 2818
TspRI CASTG 8 cut(s) 106, 1210, 2056, 2173, 2269, 2482, 2695, 3049
Van91I CCANNNNNTGG 1 cut(s) 1465
Vha464I CTTAAG 1 cut(s) 3146
VspI ATTAAT 1 cut(s) 3068
XapI RAATTY 7 cut(s) 270, 463, 567, 704, 1028, 1242, 3079
XbaI TCTAGA 2 cut(s) 1276, 3131
XceI RCATGY 3 cut(s) 1550, 1807, 2416
XmiI GTMKAC 1 cut(s) 242
XmnI GAANNNNTTC 6 cut(s) 1070, 1098, 1298, 1710, 1827, 2211
ZraI GACGTC 2 cut(s) 622, 1540
ZrmI AGTACT 1 cut(s) 1161
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.