Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005291

Physical Location & Seq

Genomic Coordinates Reverse (-)

654714 .. 656397

Gene Structure 1684 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0004900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1443 bp

ATGAGCATACAAAGCCCTTCACCTCCTCAGTGGAAGTATGATGTCTTTTTGAGTTTTAGAGGCGAGGATACTCGAAAGGCTTTTACAGACCATTTATACACTGCATTGGATCATCAAGGAATCACAACTTTCAGGGATGATCCTCAACTTCACAAAGGGGAAGCTATTTCTCCAGCACTTTTTGCTGCAATTGAAGAATCAAGATTTGCTCTCATTGTTCTCTCACAAAATTATGCATCGTCAACATGGTGCTTGGATGAACTTGTAAGAATTCTTGAATGTATGAAAGCAAGAGAAACGGTGCTGCCAATTTTCTATGATGTTGATCCTTCTGATGTACGAAAGCAAACAGGGAGATTTAAAGAAGCTTTCATTGATCATGAAGAAAGGTTTAAGGACGATAAAGAGAAGGTGCAAAGATGGAGATCTGCTTTAACTGAAGTGGCAACTTTCTCTGGGTGGAATTCAAAGGAATGGTATGAAGCAAAGCTCATTAGAGATATTGTTGAAGTTATATGGAAAAAACTGCAACCTACATCATTCAGTTTTGCAGAAAATCTAGTTGGAATTTACTCAAGATTGCAGCCACTCAATTTGCTTTTAGGTGTAGGGGTGGATGACGTCCGTTTCATTGGTATATGGGGAATGGGCGGGATTGGTAAGACAACTATGGTAAGAGCGGTGTATGAGAGAATCTCTCATGAATTTGAATTTAGTTTCCTTCTTACCGATGTTAGAGACTCCGTTGAAAAAAGTGGTTTACTTATTCTACAAAAGCAACTTCTCTCTGGGATTTGGACAAAAAAGGCTGACATTTCAGACCTTTATGAAGGAGCCACCAAAATAAGGAGGTTGTTAGGTCACAAGAAAGTTCTTCTCATTCTCGATGATGTGACCCATTCAAGGCATTTGAAATATTTGGCAGGAAACCAAGATTGGTTTGGTTCAGGGAGTAGAGTTCTCATCACAACTAGAAATGAGCATTTATTGATCGAACATGGAGTGGAGAGAAGATTGAAGGTTGAGGAATTTAATGATGAGGATTCTCTTCAGCTTTTTAGCTGGAAAGCATTCAAAAGAGGTTACCCTGAAGAAGATTTTCTTGGTTTGTCTAAATCTGTCATAAATTATGCCAAAGGTCTCCCTTTAGCTCTTGAAGTACTGGGCTCTTTTTTGCATGGAAGAGATCGAAGTGAATGGAACAGTTCATTAAGAAAACTAGGAAGAGTGTGTAACTTGGAAATTTTTGACATACTTAAAACAAGTTATGATGGTCTAGATGATGAAGAGAAGAAAATATTCCTAGACATTTCATGCTTCTTTTGCGGAGAGGACAAAGATAGAGTAACAGAAGTACTGATCAGTTGCGATGTTTCTGCGATTATTGGAATAAAAGTTCTTATCGAAAGGTGCCTCTTGACTGTTTCATATGGAAGACTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

480

Amino Acids

55.17

Weight (kDa)

5.97

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	12 - 182	3.6e-55	TIR domain
TIR_2	PF13676	15 - 111	3.6e-16	TIR domain
NB-ARC	PF00931	206 - 360	2.1e-21	NB-ARC domain
WHD_ROQ1	PF23282	428 - 479	1.6e-06	Disease resistance protein Roq1-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18840 AT3G18840
fragaria_vesca	FvH4_2g08350
malus_domestica	MD10G1080500.v1.1
prunus_persica	Prupe.8G101800_v2.0.a1
pyrus_communis	pycom10g06370
rosa_chinensis	RchiOBHm_Chr6g0263351
rosa_laevigata	RLG00000014350 RLG00000014352 RLG00000014358 RLG00000014361
rosa_multiflora	Rmu_sc0000565.1_g000003 Rmu_sc0000565.1_g000007 Rmu_sc0003785.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431070 Rroxscaffold_7G00204480
rosa_rugosa	Rorug06G0004400 Rorug06G0004500 Rorug06G0004600 Rorug06G0004900
rosa_samantha	Rh6AG124100 Rh6BG118900 Rh6BG119400 Rh6CG116900 Rh6CG117400 Rh6DG105600 Rh6DG106100
rosa_wichuraiana	Rw6G010650 Rw6G010790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	624
AccB1I	GGYRCC	1 cut(s)	1410
AccBSI	CCGCTC	1 cut(s)	680
AciI	CCGC	3 cut(s)	651, 680, 1326
AclWI	GGATC	3 cut(s)	117, 134, 320
AcsI	RAATTY	7 cut(s)	270, 463, 567, 704, 710, 1028, 1242
AcuI	CTGAAG	3 cut(s)	459, 1034, 1110
AcyI	GRCGYC	1 cut(s)	621
AfaI	GTAC	3 cut(s)	339, 1161, 1356
AfiI	CCNNNNNNNGG	2 cut(s)	846, 903
AjuI	GAANNNNNNNTTGG	6 cut(s)	546, 578, 919, 951, 1086, 1118
AloI	GAACNNNNNNTCC	2 cut(s)	1380, 1412
AluBI	AGCT	6 cut(s)	164, 368, 490, 1054, 1062, 1151
AluI	AGCT	6 cut(s)	164, 368, 490, 1054, 1062, 1151
Alw26I	GTCTC	2 cut(s)	732, 1145
AlwI	GGATC	3 cut(s)	117, 134, 320
ApeKI	GCWGC	3 cut(s)	185, 304, 583
ApoI	RAATTY	7 cut(s)	270, 463, 567, 704, 710, 1028, 1242
Asp700I	GAANNNNTTC	3 cut(s)	1070, 1098, 1298
AsuHPI	GGTGA	1 cut(s)	12
BanI	GGYRCC	1 cut(s)	1410
BanII	GRGCYC	1 cut(s)	1169
BbvI	GCAGC	3 cut(s)	172, 291, 595
BccI	CCATC	2 cut(s)	414, 1265
BcgI	CGANNNNNNTGC	2 cut(s)	1358, 1392
BciVI	GTATCC	1 cut(s)	61
BclI	TGATCA	2 cut(s)	376, 1359
BcoDI	GTCTC	2 cut(s)	732, 1145
BfaI	CTAG	5 cut(s)	560, 972, 1220, 1277, 1304
BfuI	GTATCC	1 cut(s)	61
BglII	AGATCT	1 cut(s)	425
BisI	GCNGC	3 cut(s)	186, 305, 584
BlsI	GCNGC	3 cut(s)	187, 306, 585
BmcAI	AGTACT	2 cut(s)	1161, 1356
BmiI	GGNNCC	2 cut(s)	835, 1412
BmrI	ACTGGG	1 cut(s)	1172
BmsI	GCATC	1 cut(s)	245
BmuI	ACTGGG	1 cut(s)	1172
BplI	GAGNNNNNCTC	4 cut(s)	680, 712, 682, 714
BpmI	CTGGAG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	559
BsaBI	GATNNNNATC	2 cut(s)	324, 424
BsaHI	GRCGYC	1 cut(s)	621
BsaI	GGTCTC	1 cut(s)	1145
Bsc4I	CCNNNNNNNGG	2 cut(s)	846, 903
Bse1I	ACTGG	1 cut(s)	1167
Bse8I	GATNNNNATC	2 cut(s)	324, 424
BseGI	GGATG	3 cut(s)	142, 262, 622
BseJI	GATNNNNATC	2 cut(s)	324, 424
BseLI	CCNNNNNNNGG	2 cut(s)	846, 903
BseMII	CTCAG	1 cut(s)	41
BseNI	ACTGG	1 cut(s)	1167
BseRI	GAGGAG	1 cut(s)	15
BseXI	GCAGC	3 cut(s)	172, 291, 595
BshNI	GGYRCC	1 cut(s)	1410
BslI	CCNNNNNNNGG	2 cut(s)	846, 903
BsmAI	GTCTC	2 cut(s)	732, 1145
BsmI	GAATGC	1 cut(s)	1070
Bso31I	GGTCTC	1 cut(s)	1145
Bsp1286I	GDGCHC	1 cut(s)	1169
Bsp143I	GATC	8 cut(s)	109, 139, 325, 376, 425, 990, 1186, 1359
BspACI	CCGC	3 cut(s)	651, 680, 1326
BspCNI	CTCAG	1 cut(s)	40
BspHI	TCATGA	2 cut(s)	379, 700
BspLI	GGNNCC	2 cut(s)	835, 1412
BspPI	GGATC	3 cut(s)	117, 134, 320
BspT107I	GGYRCC	1 cut(s)	1410
BspTNI	GGTCTC	1 cut(s)	1145
BsrBI	CCGCTC	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	1167
BssMI	GATC	8 cut(s)	109, 139, 325, 376, 425, 990, 1186, 1359
BssNI	GRCGYC	1 cut(s)	621
Bst4CI	ACNGT	3 cut(s)	301, 1205, 1423
Bst6I	CTCTTC	4 cut(s)	1053, 1177, 1219, 1281
BstACI	GRCGYC	1 cut(s)	621
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstDEI	CTNAG	1 cut(s)	27
BstEII	GGTNACC	1 cut(s)	1082
BstF5I	GGATG	3 cut(s)	142, 262, 622
BstKTI	GATC	8 cut(s)	112, 142, 328, 379, 428, 993, 1189, 1362
BstMAI	GTCTC	2 cut(s)	732, 1145
BstMBI	GATC	8 cut(s)	109, 139, 325, 376, 425, 990, 1186, 1359
BstMWI	GCNNNNNNNGC	3 cut(s)	12, 182, 1323
BstPI	GGTNACC	1 cut(s)	1082
BstV1I	GCAGC	3 cut(s)	172, 291, 595
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	61
BtgZI	GCGATG	1 cut(s)	1383
BtsCI	GGATG	3 cut(s)	142, 262, 622
BtsI	GCAGTG	1 cut(s)	99
BtsIMutI	CAGTG	2 cut(s)	35, 99
CciI	TCATGA	2 cut(s)	379, 700
Csp6I	GTAC	3 cut(s)	338, 1160, 1355
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviAII	CATG	6 cut(s)	246, 380, 701, 998, 1178, 1314
CviQI	GTAC	3 cut(s)	338, 1160, 1355
DdeI	CTNAG	1 cut(s)	27
DpnI	GATC	8 cut(s)	111, 141, 327, 378, 427, 992, 1188, 1361
DpnII	GATC	8 cut(s)	109, 139, 325, 376, 425, 990, 1186, 1359
DraI	TTTAAA	1 cut(s)	361
Eam1104I	CTCTTC	4 cut(s)	1053, 1177, 1219, 1281
EarI	CTCTTC	4 cut(s)	1053, 1177, 1219, 1281
Eco24I	GRGCYC	1 cut(s)	1169
Eco31I	GGTCTC	1 cut(s)	1145
Eco57I	CTGAAG	3 cut(s)	459, 1034, 1110
Eco91I	GGTNACC	1 cut(s)	1082
EcoO65I	GGTNACC	1 cut(s)	1082
EcoRI	GAATTC	2 cut(s)	270, 463
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	1169
FaeI	CATG	6 cut(s)	249, 383, 704, 1001, 1181, 1317
FalI	AAGNNNNNCTT	2 cut(s)	1086, 1118
FatI	CATG	6 cut(s)	245, 379, 700, 997, 1177, 1313
FauI	CCCGC	1 cut(s)	644
FauNDI	CATATG	1 cut(s)	1429
FbaI	TGATCA	2 cut(s)	376, 1359
Fnu4HI	GCNGC	3 cut(s)	186, 305, 584
FokI	GGATG	3 cut(s)	149, 269, 629
FriOI	GRGCYC	1 cut(s)	1169
Fsp4HI	GCNGC	3 cut(s)	186, 305, 584
FspBI	CTAG	5 cut(s)	560, 972, 1220, 1277, 1304
GluI	GCNGC	3 cut(s)	186, 305, 584
GsuI	CTGGAG	1 cut(s)	156
Hin1I	GRCGYC	1 cut(s)	621
Hin1II	CATG	6 cut(s)	249, 383, 704, 1001, 1181, 1317
HincII	GTYRAC	1 cut(s)	243
HindII	GTYRAC	1 cut(s)	243
HindIII	AAGCTT	1 cut(s)	366
HinfI	GANTC	5 cut(s)	120, 197, 693, 740, 1043
HphI	GGTGA	1 cut(s)	12
Hpy166II	GTNNAC	2 cut(s)	243, 761
Hpy188I	TCNGA	2 cut(s)	334, 820
Hpy188III	TCNNGA	9 cut(s)	201, 275, 380, 576, 701, 884, 1154, 1277, 1417
Hpy8I	GTNNAC	2 cut(s)	243, 761
HpyAV	CCTTC	6 cut(s)	27, 339, 403, 731, 824, 1012
HpyCH4III	ACNGT	3 cut(s)	301, 1205, 1423
HpyCH4IV	ACGT	1 cut(s)	621
HpyCH4V	TGCA	8 cut(s)	104, 188, 236, 415, 529, 551, 583, 1177
HpyF10VI	GCNNNNNNNGC	3 cut(s)	12, 182, 1323
HpyF3I	CTNAG	1 cut(s)	27
HpySE526I	ACGT	1 cut(s)	621
Hsp92I	GRCGYC	1 cut(s)	621
Hsp92II	CATG	6 cut(s)	249, 383, 704, 1001, 1181, 1317
Ksp22I	TGATCA	2 cut(s)	376, 1359
Kzo9I	GATC	8 cut(s)	109, 139, 325, 376, 425, 990, 1186, 1359
LmnI	GCTCC	1 cut(s)	833
Lsp1109I	GCAGC	3 cut(s)	172, 291, 595
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	5 cut(s)	560, 972, 1220, 1277, 1304
MaeII	ACGT	1 cut(s)	621
MaeIII	GTNAC	5 cut(s)	860, 892, 1082, 1232, 1345
MalI	GATC	8 cut(s)	111, 141, 327, 378, 427, 992, 1188, 1361
MbiI	CCGCTC	1 cut(s)	680
MboI	GATC	8 cut(s)	109, 139, 325, 376, 425, 990, 1186, 1359
MfeI	CAATTG	1 cut(s)	189
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	1169
MlyI	GAGTC	1 cut(s)	734
MmeI	TCCRAC	1 cut(s)	544
Mph1103I	ATGCAT	1 cut(s)	238
MroXI	GAANNNNTTC	3 cut(s)	1070, 1098, 1298
MseI	TTAA	6 cut(s)	360, 393, 434, 1032, 1211, 1257
MunI	CAATTG	1 cut(s)	189
Mva1269I	GAATGC	1 cut(s)	1070
MwoI	GCNNNNNNNGC	3 cut(s)	12, 182, 1323
NdeI	CATATG	1 cut(s)	1429
NdeII	GATC	8 cut(s)	109, 139, 325, 376, 425, 990, 1186, 1359
NlaIII	CATG	6 cut(s)	249, 383, 704, 1001, 1181, 1317
NlaIV	GGNNCC	2 cut(s)	835, 1412
NmuCI	GTSAC	2 cut(s)	860, 892
NsiI	ATGCAT	1 cut(s)	238
PagI	TCATGA	2 cut(s)	379, 700
PctI	GAATGC	1 cut(s)	1070
PdmI	GAANNNNTTC	3 cut(s)	1070, 1098, 1298
PfeI	GAWTC	4 cut(s)	120, 197, 693, 1043
PkrI	GCNGC	3 cut(s)	187, 306, 585
PleI	GAGTC	1 cut(s)	734
PpsI	GAGTC	1 cut(s)	734
PspEI	GGTNACC	1 cut(s)	1082
PspN4I	GGNNCC	2 cut(s)	835, 1412
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	3 cut(s)	339, 1161, 1356
RsaNI	GTAC	3 cut(s)	338, 1160, 1355
SaqAI	TTAA	6 cut(s)	360, 393, 434, 1032, 1211, 1257
SatI	GCNGC	3 cut(s)	186, 305, 584
Sau3AI	GATC	8 cut(s)	109, 139, 325, 376, 425, 990, 1186, 1359
ScaI	AGTACT	2 cut(s)	1161, 1356
SchI	GAGTC	1 cut(s)	734
SduI	GDGCHC	1 cut(s)	1169
SfaNI	GCATC	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	574
SmoI	CTYRAG	1 cut(s)	574
SsiI	CCGC	3 cut(s)	651, 680, 1326
SspI	AATATT	2 cut(s)	917, 1299
SspMI	CTAG	5 cut(s)	560, 972, 1220, 1277, 1304
TaaI	ACNGT	3 cut(s)	301, 1205, 1423
TaiI	ACGT	1 cut(s)	624
TaqI	TCGA	5 cut(s)	73, 885, 993, 1189, 1404
TatI	WGTACW	2 cut(s)	1159, 1354
TfiI	GAWTC	4 cut(s)	120, 197, 693, 1043
Tru1I	TTAA	6 cut(s)	360, 393, 434, 1032, 1211, 1257
Tru9I	TTAA	6 cut(s)	360, 393, 434, 1032, 1211, 1257
TscAI	CASTG	2 cut(s)	35, 106
TseFI	GTSAC	2 cut(s)	860, 892
TseI	GCWGC	3 cut(s)	185, 304, 583
Tsp45I	GTSAC	2 cut(s)	860, 892
TspGWI	ACGGA	2 cut(s)	614, 733
TspRI	CASTG	2 cut(s)	35, 106
XapI	RAATTY	7 cut(s)	270, 463, 567, 704, 710, 1028, 1242
XbaI	TCTAGA	1 cut(s)	1276
XcmI	CCANNNNNNNNNTGG	1 cut(s)	938
XmnI	GAANNNNTTC	3 cut(s)	1070, 1098, 1298
XspI	CTAG	5 cut(s)	560, 972, 1220, 1277, 1304
ZraI	GACGTC	1 cut(s)	622
ZrmI	AGTACT	2 cut(s)	1161, 1356
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.