Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0005291

Physical Location & Seq

Genomic Coordinates Forward (+)

638961 .. 639974

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0004500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGCCGAAATCCAAAGCTCACCAGATCTGCCATGGACCGTCCGCCTCTTCGTCTCCGCCGCTTCCTTCGCAGCCGACGCCTCTCGCCGCTCAAACCTCACCATCAACCGTCGCCTCTTTAACTTGTTCGACTACAAACCCTCTCCCTTAACAAAACCTCACAAAAACCTCAAGAGCTCCGACATCGTGGTCGCCGCCGCTGACCCTTCCCGCAACCTCTGGTTCCGCCTCTACACTCCCACCGCCGCTACCACCAAGCTCCCCATCATCGTCTTCTTCCACGGCGGCGGGTTCGCCTTCATGTCCGCCGCTTCAAAACCCTACGACGACTTCTGTCAACGCCTCGCTCGCGACATCCCCGCCGTCGTCGTCTCCGTCAACTACCGCCTCGCGCCGGAGCATCGGTATCCGTGCCAGTACGACGACGGTTTCGACGTCCTCAAGTTCATCGACGACAGTCAAAGCAGCTTGTTCGAGGGCGCGAATCTCGCGCAGTGTTTTCTGGCCGGGGACAGCTCCGGCGGGAACATAGCGCACCACGTGGCGATCAGAGCGAGCGGGCACGAGTTTCGGGATCTGAAAGTGGTCGGGATCTTGGCGATTCAGCCGTTTTTCGGCGGAGAAGAGCGGACGGAATCGGAGAAGAGACTGAAGAGTGTGCCGCTGGTGAACGTAGAGCGGACGGACTGGATGTGGAAGGCGTTTTTACCGGAGGGGTCGGATCGGGACCATCCGGTGGTCAATGTGTTCGGGCCGAACGCTGTGGATATTTCGGGGGTGGATTTTCCGGCGACGATTGTGTTTGTTGGGGGATTCGATCCGTTGCAGGATTGGCAGAAGAGGTACTACGAGGGATTGAAGAAACGCGGGAAACAAGCGGAGCTGGTGGTGTTTCCAAATGCCATTCATACTTTCTATGCTTATCCCGAGTTGGATGACTCTTCTGCGTTTATTAACAAAGTCAGGGATTTCGTGCAATTGCAATCAGTTAATGTTACTGAAACAAGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

337

Amino Acids

37.78

Weight (kDa)

6.46

Isoelectric Point (pI)

49.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	76 - 131	5.8e-08	Carboxylesterase family
BD-FAE	PF20434	77 - 190	2.4e-12	BD-FAE
Abhydrolase_3	PF07859	90 - 306	7.5e-60	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18840 AT3G18840
fragaria_vesca	FvH4_2g08350
malus_domestica	MD10G1080500.v1.1
prunus_persica	Prupe.8G101800_v2.0.a1
pyrus_communis	pycom10g06370
rosa_chinensis	RchiOBHm_Chr6g0263351
rosa_laevigata	RLG00000014350 RLG00000014352 RLG00000014358 RLG00000014361
rosa_multiflora	Rmu_sc0000565.1_g000003 Rmu_sc0000565.1_g000007 Rmu_sc0003785.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431070 Rroxscaffold_7G00204480
rosa_rugosa	Rorug06G0004400 Rorug06G0004500 Rorug06G0004600 Rorug06G0004900
rosa_samantha	Rh6AG124100 Rh6BG118900 Rh6BG119400 Rh6CG116900 Rh6CG117400 Rh6DG105600 Rh6DG106100
rosa_wichuraiana	Rw6G010650 Rw6G010790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	188
AatII	GACGTC	1 cut(s)	438
AccB7I	CCANNNNNTGG	1 cut(s)	736
AccBSI	CCGCTC	4 cut(s)	90, 558, 628, 679
AccII	CGCG	5 cut(s)	351, 392, 482, 491, 867
AclWI	GGATC	4 cut(s)	582, 599, 729, 812
AcoI	YGGCCR	2 cut(s)	3, 504
AcuI	CTGAAG	1 cut(s)	671
AcvI	CACGTG	1 cut(s)	541
AcyI	GRCGYC	2 cut(s)	78, 435
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	2 cut(s)	419, 845
AfiI	CCNNNNNNNGG	3 cut(s)	394, 614, 736
AgsI	TTSAA	2 cut(s)	315, 859
AluBI	AGCT	6 cut(s)	18, 177, 259, 468, 516, 883
AluI	AGCT	6 cut(s)	18, 177, 259, 468, 516, 883
Alw21I	GWGCWC	1 cut(s)	179
Alw26I	GTCTC	3 cut(s)	58, 376, 640
AlwI	GGATC	4 cut(s)	582, 599, 729, 812
Ama87I	CYCGRG	1 cut(s)	926
AoxI	GGCC	3 cut(s)	3, 504, 752
ApeKI	GCWGC	2 cut(s)	71, 465
ArsI	GACNNNNNNTTYG	2 cut(s)	413, 445
AspLEI	GCGC	4 cut(s)	394, 482, 493, 535
AspS9I	GGNCC	3 cut(s)	36, 727, 752
AsuC2I	CCSGG	1 cut(s)	508
AsuHPI	GGTGA	3 cut(s)	12, 91, 679
AvaI	CYCGRG	1 cut(s)	926
AvaII	GGWCC	2 cut(s)	36, 727
BaeGI	GKGCMC	1 cut(s)	564
BanII	GRGCYC	1 cut(s)	179
BarI	GAAGNNNNNNTAC	2 cut(s)	830, 862
BauI	CACGAG	1 cut(s)	563
BbrPI	CACGTG	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	179
BbvI	GCAGC	2 cut(s)	83, 477
BccI	CCATC	3 cut(s)	110, 272, 738
BceAI	ACGGC	3 cut(s)	298, 347, 592
BcgI	CGANNNNNNTGC	4 cut(s)	454, 488, 551, 585
BciVI	GTATCC	1 cut(s)	417
BcnI	CCSGG	1 cut(s)	508
BcoDI	GTCTC	3 cut(s)	58, 376, 640
BfuI	GTATCC	1 cut(s)	417
BglII	AGATCT	1 cut(s)	25
Bme1390I	CCNGG	1 cut(s)	508
Bme18I	GGWCC	2 cut(s)	36, 727
BmeT110I	CYCGRG	1 cut(s)	926
BmgT120I	GGNCC	3 cut(s)	36, 727, 752
BmiI	GGNNCC	2 cut(s)	224, 728
BmrFI	CCNGG	1 cut(s)	508
BmsI	GCATC	1 cut(s)	409
BoxI	GACNNNNGTC	2 cut(s)	333, 456
BpiI	GAAGAC	1 cut(s)	265
BpuEI	CTTGAG	2 cut(s)	155, 425
BpuMI	CCSGG	1 cut(s)	508
BsaAI	YACGTR	1 cut(s)	541
BsaHI	GRCGYC	2 cut(s)	78, 435
BsaJI	CCNNGG	3 cut(s)	32, 280, 507
BsaWI	WCCGGW	2 cut(s)	709, 733
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	3 cut(s)	394, 614, 736
Bse1I	ACTGG	2 cut(s)	415, 692
BseDI	CCNNGG	3 cut(s)	32, 280, 507
BseGI	GGATG	4 cut(s)	354, 696, 730, 940
BseLI	CCNNNNNNNGG	3 cut(s)	394, 614, 736
BseNI	ACTGG	2 cut(s)	415, 692
BseSI	GKGCMC	1 cut(s)	564
BseXI	GCAGC	2 cut(s)	83, 477
Bsh1236I	CGCG	5 cut(s)	351, 392, 482, 491, 867
BshFI	GGCC	3 cut(s)	5, 506, 754
BsiHKAI	GWGCWC	1 cut(s)	179
BsiHKCI	CYCGRG	1 cut(s)	926
BsiSI	CCGG	6 cut(s)	395, 507, 519, 710, 734, 788
BslFI	GGGAC	2 cut(s)	524, 740
BslI	CCNNNNNNNGG	3 cut(s)	394, 614, 736
BsmAI	GTCTC	3 cut(s)	58, 376, 640
BsmBI	CGTCTC	2 cut(s)	58, 376
BsmFI	GGGAC	2 cut(s)	524, 740
BsnI	GGCC	3 cut(s)	5, 506, 754
BsoBI	CYCGRG	1 cut(s)	926
Bsp1286I	GDGCHC	2 cut(s)	179, 564
Bsp143I	GATC	6 cut(s)	25, 546, 574, 591, 721, 817
Bsp19I	CCATGG	1 cut(s)	32
Bsp68I	TCGCGA	1 cut(s)	351
BspANI	GGCC	3 cut(s)	5, 506, 754
BspFNI	CGCG	5 cut(s)	351, 392, 482, 491, 867
BspLI	GGNNCC	2 cut(s)	224, 728
BspPI	GGATC	4 cut(s)	582, 599, 729, 812
BspQI	GCTCTTC	1 cut(s)	618
BsrBI	CCGCTC	4 cut(s)	90, 558, 628, 679
BsrI	ACTGG	2 cut(s)	415, 692
BssECI	CCNNGG	3 cut(s)	32, 280, 507
BssMI	GATC	6 cut(s)	25, 546, 574, 591, 721, 817
BssNI	GRCGYC	2 cut(s)	78, 435
BssSI	CACGAG	1 cut(s)	563
BssT1I	CCWWGG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	563
Bst4CI	ACNGT	4 cut(s)	40, 110, 428, 458
Bst6I	CTCTTC	6 cut(s)	53, 618, 638, 647, 833, 946
BstACI	GRCGYC	2 cut(s)	78, 435
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	3 cut(s)	349, 556, 560
BstDSI	CCRYGG	2 cut(s)	32, 280
BstF5I	GGATG	4 cut(s)	354, 696, 730, 940
BstFNI	CGCG	5 cut(s)	351, 392, 482, 491, 867
BstHHI	GCGC	4 cut(s)	394, 482, 493, 535
BstKTI	GATC	6 cut(s)	28, 549, 577, 594, 724, 820
BstMAI	GTCTC	3 cut(s)	58, 376, 640
BstMBI	GATC	6 cut(s)	25, 546, 574, 591, 721, 817
BstMWI	GCNNNNNNNGC	6 cut(s)	68, 77, 348, 488, 551, 832
BstPAI	GACNNNNGTC	2 cut(s)	333, 456
BstSCI	CCNGG	1 cut(s)	506
BstSLI	GKGCMC	1 cut(s)	564
BstUI	CGCG	5 cut(s)	351, 392, 482, 491, 867
BstV1I	GCAGC	2 cut(s)	83, 477
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	3 cut(s)	25, 574, 591
BstYI	RGATCY	3 cut(s)	25, 574, 591
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	5, 506, 754
BtgI	CCRYGG	2 cut(s)	32, 280
BtsCI	GGATG	4 cut(s)	354, 696, 730, 940
BtsI	GCAGTG	1 cut(s)	500
BtsIMutI	CAGTG	1 cut(s)	500
BtuMI	TCGCGA	1 cut(s)	351
Cac8I	GCNNGC	3 cut(s)	349, 556, 560
CfoI	GCGC	4 cut(s)	394, 482, 493, 535
Cfr13I	GGNCC	3 cut(s)	36, 727, 752
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	418, 844
CviAII	CATG	2 cut(s)	33, 301
CviQI	GTAC	2 cut(s)	418, 844
DpnI	GATC	6 cut(s)	27, 548, 576, 593, 723, 819
DpnII	GATC	6 cut(s)	25, 546, 574, 591, 721, 817
DraIII	CACNNNGTG	1 cut(s)	541
DrdI	GACNNNNNNGTC	1 cut(s)	188
DseDI	GACNNNNNNGTC	1 cut(s)	188
EaeI	YGGCCR	2 cut(s)	3, 504
Eam1104I	CTCTTC	6 cut(s)	53, 618, 638, 647, 833, 946
EarI	CTCTTC	6 cut(s)	53, 618, 638, 647, 833, 946
EciI	GGCGGA	5 cut(s)	32, 46, 215, 295, 633
Ecl136II	GAGCTC	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	179
Eco47I	GGWCC	2 cut(s)	36, 727
Eco53kI	GAGCTC	1 cut(s)	177
Eco57I	CTGAAG	1 cut(s)	671
Eco72I	CACGTG	1 cut(s)	541
Eco88I	CYCGRG	1 cut(s)	926
EcoICRI	GAGCTC	1 cut(s)	177
EcoT14I	CCWWGG	1 cut(s)	32
EcoT38I	GRGCYC	1 cut(s)	179
ErhI	CCWWGG	1 cut(s)	32
Esp3I	CGTCTC	2 cut(s)	58, 376
FaeI	CATG	2 cut(s)	36, 304
FaiI	YATR	5 cut(s)	34, 302, 530, 909, 918
FaqI	GGGAC	2 cut(s)	524, 740
FatI	CATG	2 cut(s)	32, 300
FauI	CCCGC	6 cut(s)	218, 281, 367, 515, 551, 860
FokI	GGATG	4 cut(s)	341, 703, 717, 947
FriOI	GRGCYC	1 cut(s)	179
GlaI	GCGC	4 cut(s)	393, 481, 492, 534
HaeIII	GGCC	3 cut(s)	5, 506, 754
HapII	CCGG	6 cut(s)	395, 507, 519, 710, 734, 788
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	4 cut(s)	394, 482, 493, 535
Hin1I	GRCGYC	2 cut(s)	78, 435
Hin1II	CATG	2 cut(s)	36, 304
Hin6I	GCGC	4 cut(s)	392, 480, 491, 533
HinP1I	GCGC	4 cut(s)	392, 480, 491, 533
HincII	GTYRAC	2 cut(s)	338, 379
HindII	GTYRAC	2 cut(s)	338, 379
HinfI	GANTC	5 cut(s)	484, 601, 635, 813, 938
HpaII	CCGG	6 cut(s)	395, 507, 519, 710, 734, 788
HphI	GGTGA	3 cut(s)	12, 91, 679
Hpy166II	GTNNAC	3 cut(s)	338, 379, 670
Hpy188I	TCNGA	5 cut(s)	181, 551, 579, 640, 721
Hpy188III	TCNNGA	6 cut(s)	172, 350, 572, 589, 725, 926
Hpy8I	GTNNAC	3 cut(s)	338, 379, 670
HpyAV	CCTTC	4 cut(s)	76, 216, 307, 691
HpyCH4III	ACNGT	4 cut(s)	40, 110, 428, 458
HpyCH4IV	ACGT	3 cut(s)	435, 540, 672
HpyCH4V	TGCA	3 cut(s)	826, 976, 982
HpyF10VI	GCNNNNNNNGC	6 cut(s)	68, 77, 348, 488, 551, 832
HpySE526I	ACGT	3 cut(s)	435, 540, 672
Hsp92I	GRCGYC	2 cut(s)	78, 435
Hsp92II	CATG	2 cut(s)	36, 304
HspAI	GCGC	4 cut(s)	392, 480, 491, 533
Kzo9I	GATC	6 cut(s)	25, 546, 574, 591, 721, 817
LguI	GCTCTTC	1 cut(s)	618
LmnI	GCTCC	5 cut(s)	182, 264, 397, 521, 880
Lsp1109I	GCAGC	2 cut(s)	83, 477
LweI	GCATC	1 cut(s)	409
MaeII	ACGT	3 cut(s)	435, 540, 672
MaeIII	GTNAC	1 cut(s)	994
MalI	GATC	6 cut(s)	27, 548, 576, 593, 723, 819
MbiI	CCGCTC	4 cut(s)	90, 558, 628, 679
MboI	GATC	6 cut(s)	25, 546, 574, 591, 721, 817
MboII	GAAGA	9 cut(s)	40, 265, 268, 635, 655, 664, 850, 871, 933
MfeI	CAATTG	1 cut(s)	977
MflI	RGATCY	3 cut(s)	25, 574, 591
MhlI	GDGCHC	2 cut(s)	179, 564
MluCI	AATT	1 cut(s)	977
MlyI	GAGTC	1 cut(s)	932
MmeI	TCCRAC	3 cut(s)	204, 699, 912
MseI	TTAA	4 cut(s)	120, 149, 954, 990
MspA1I	CMGCKG	2 cut(s)	200, 664
MspI	CCGG	6 cut(s)	395, 507, 519, 710, 734, 788
MspR9I	CCNGG	1 cut(s)	508
MunI	CAATTG	1 cut(s)	977
MvnI	CGCG	5 cut(s)	351, 392, 482, 491, 867
MwoI	GCNNNNNNNGC	6 cut(s)	68, 77, 348, 488, 551, 832
NciI	CCSGG	1 cut(s)	508
NcoI	CCATGG	1 cut(s)	32
NdeII	GATC	6 cut(s)	25, 546, 574, 591, 721, 817
NlaIII	CATG	2 cut(s)	36, 304
NlaIV	GGNNCC	2 cut(s)	224, 728
NruI	TCGCGA	1 cut(s)	351
PciSI	GCTCTTC	1 cut(s)	618
PcsI	WCGNNNNNNNCGW	3 cut(s)	372, 429, 432
PfeI	GAWTC	4 cut(s)	484, 601, 635, 813
PflMI	CCANNNNNTGG	1 cut(s)	736
PleI	GAGTC	1 cut(s)	932
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
PpsI	GAGTC	1 cut(s)	932
Ppu21I	YACGTR	1 cut(s)	541
PshAI	GACNNNNGTC	2 cut(s)	333, 456
Psp124BI	GAGCTC	1 cut(s)	179
PspCI	CACGTG	1 cut(s)	541
PspN4I	GGNNCC	2 cut(s)	224, 728
PspPI	GGNCC	3 cut(s)	36, 727, 752
PsuI	RGATCY	3 cut(s)	25, 574, 591
RruI	TCGCGA	1 cut(s)	351
RsaI	GTAC	2 cut(s)	419, 845
RsaNI	GTAC	2 cut(s)	418, 844
SacI	GAGCTC	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	618
SaqAI	TTAA	4 cut(s)	120, 149, 954, 990
Sau3AI	GATC	6 cut(s)	25, 546, 574, 591, 721, 817
Sau96I	GGNCC	3 cut(s)	36, 727, 752
SchI	GAGTC	1 cut(s)	932
ScrFI	CCNGG	1 cut(s)	508
SduI	GDGCHC	2 cut(s)	179, 564
SfaNI	GCATC	1 cut(s)	409
SinI	GGWCC	2 cut(s)	36, 727
SmlI	CTYRAG	2 cut(s)	170, 440
SmoI	CTYRAG	2 cut(s)	170, 440
Sse9I	AATT	1 cut(s)	977
SstI	GAGCTC	1 cut(s)	179
StyD4I	CCNGG	1 cut(s)	506
StyI	CCWWGG	1 cut(s)	32
TaaI	ACNGT	4 cut(s)	40, 110, 428, 458
TaiI	ACGT	3 cut(s)	438, 543, 675
TaqI	TCGA	5 cut(s)	129, 432, 450, 474, 816
TasI	AATT	1 cut(s)	977
TauI	GCSGC	8 cut(s)	62, 90, 197, 200, 248, 288, 311, 664
TfiI	GAWTC	4 cut(s)	484, 601, 635, 813
Tru1I	TTAA	4 cut(s)	120, 149, 954, 990
Tru9I	TTAA	4 cut(s)	120, 149, 954, 990
TscAI	CASTG	1 cut(s)	500
TseI	GCWGC	2 cut(s)	71, 465
TspDTI	ATGAA	3 cut(s)	289, 436, 896
TspGWI	ACGGA	5 cut(s)	364, 399, 647, 698, 810
TspRI	CASTG	1 cut(s)	500
Van91I	CCANNNNNTGG	1 cut(s)	736
VpaK11BI	GGWCC	2 cut(s)	36, 727
XcmI	CCANNNNNNNNNTGG	1 cut(s)	30
ZraI	GACGTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.