Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005291

Physical Location & Seq

Genomic Coordinates Forward (+)

52033177 .. 52033777

Gene Structure 601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014358

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGCCCCACCGAAATGTCTACTCTTGCACCGCCATAATCTCCACCCACATCACATCATGCAACTTGCAACGAGCCCGGCAGCTATTCGACACTGCTTCTTTCAAAGATTTGTTGCATTTGTATGTGGTGAAAACTGCCAATGATTTGAGTGGGTTCGCGGTGAGCTCGTTAATTGATATGTACTCTAAGTGTGGTTGTTTTCCTGGTGAGTGGCATGTGTTTAATGGATATAGAAGGGTGGTTGACTCAGTTTCGAAGAACGCAAGGGTGGTAGCTTCTTGTAGAGAAGGGAAATTTGACGTGGCGAATGGTTTTGTAGATGAGGGATTAAATTTGGTTCTTCGCATCGCATGGCCGAAAATGGATTTCGATGGAATGAGCACACTTTTGCTAGTGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

134

Amino Acids

14.92

Weight (kDa)

8.32

Isoelectric Point (pI)

40.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18840 AT3G18840
fragaria_vesca	FvH4_2g08350
malus_domestica	MD10G1080500.v1.1
prunus_persica	Prupe.8G101800_v2.0.a1
pyrus_communis	pycom10g06370
rosa_chinensis	RchiOBHm_Chr6g0263351
rosa_laevigata	RLG00000014350 RLG00000014352 RLG00000014358 RLG00000014361
rosa_multiflora	Rmu_sc0000565.1_g000003 Rmu_sc0000565.1_g000007 Rmu_sc0003785.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431070 Rroxscaffold_7G00204480
rosa_rugosa	Rorug06G0004400 Rorug06G0004500 Rorug06G0004600 Rorug06G0004900
rosa_samantha	Rh6AG124100 Rh6BG118900 Rh6BG119400 Rh6CG116900 Rh6CG117400 Rh6DG105600 Rh6DG106100
rosa_wichuraiana	Rw6G010650 Rw6G010790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	18
AccII	CGCG	1 cut(s)	158
AciI	CCGC	2 cut(s)	30, 158
AcoI	YGGCCR	1 cut(s)	353
AcsI	RAATTY	2 cut(s)	293, 331
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	103
AjiI	CACGTC	1 cut(s)	301
AjnI	CCWGG	1 cut(s)	202
AluBI	AGCT	3 cut(s)	82, 165, 275
AluI	AGCT	3 cut(s)	82, 165, 275
Alw21I	GWGCWC	2 cut(s)	167, 383
AoxI	GGCC	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	2 cut(s)	293, 331
AsuC2I	CCSGG	1 cut(s)	76
AsuHPI	GGTGA	3 cut(s)	139, 172, 218
AsuII	TTCGAA	1 cut(s)	254
BanII	GRGCYC	2 cut(s)	76, 167
Bbv12I	GWGCWC	2 cut(s)	167, 383
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	204
BcnI	CCSGG	1 cut(s)	76
BfaI	CTAG	1 cut(s)	392
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
Bme1390I	CCNGG	2 cut(s)	76, 204
BmgBI	CACGTC	1 cut(s)	301
BmrFI	CCNGG	2 cut(s)	76, 204
BmsI	GCATC	1 cut(s)	354
Bpu14I	TTCGAA	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	76
BseBI	CCWGG	1 cut(s)	204
BseMII	CTCAG	1 cut(s)	261
BseXI	GCAGC	1 cut(s)	91
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	355
BsiHKAI	GWGCWC	2 cut(s)	167, 383
BsiSI	CCGG	1 cut(s)	76
BsnI	GGCC	1 cut(s)	355
Bsp119I	TTCGAA	1 cut(s)	254
Bsp1286I	GDGCHC	3 cut(s)	76, 167, 383
BspACI	CCGC	2 cut(s)	30, 158
BspANI	GGCC	1 cut(s)	355
BspCNI	CTCAG	1 cut(s)	260
BspFNI	CGCG	1 cut(s)	158
BspT104I	TTCGAA	1 cut(s)	254
Bst2UI	CCWGG	1 cut(s)	204
BstBI	TTCGAA	1 cut(s)	254
BstDEI	CTNAG	2 cut(s)	186, 247
BstFNI	CGCG	1 cut(s)	158
BstNI	CCWGG	1 cut(s)	204
BstNSI	RCATGY	1 cut(s)	218
BstSCI	CCNGG	2 cut(s)	74, 202
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	91
BsuRI	GGCC	1 cut(s)	355
BtgZI	GCGATG	1 cut(s)	331
BtrI	CACGTC	1 cut(s)	301
BtsI	GCAGTG	1 cut(s)	90
BtsIMutI	CAGTG	1 cut(s)	90
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	3 cut(s)	57, 215, 351
CviJI	RGCY	5 cut(s)	74, 82, 165, 275, 355
CviKI_1	RGCY	5 cut(s)	74, 82, 165, 275, 355
CviQI	GTAC	1 cut(s)	181
DdeI	CTNAG	2 cut(s)	186, 247
EaeI	YGGCCR	1 cut(s)	353
Ecl136II	GAGCTC	1 cut(s)	165
Eco24I	GRGCYC	2 cut(s)	76, 167
Eco53kI	GAGCTC	1 cut(s)	165
EcoICRI	GAGCTC	1 cut(s)	165
EcoRII	CCWGG	1 cut(s)	202
EcoT38I	GRGCYC	2 cut(s)	76, 167
FaeI	CATG	3 cut(s)	60, 218, 354
FaiI	YATR	7 cut(s)	35, 58, 123, 179, 216, 231, 352
FatI	CATG	3 cut(s)	56, 214, 350
FblI	GTMKAC	1 cut(s)	18
Fnu4HI	GCNGC	1 cut(s)	80
FriOI	GRGCYC	2 cut(s)	76, 167
Fsp4HI	GCNGC	1 cut(s)	80
FspBI	CTAG	1 cut(s)	392
GluI	GCNGC	1 cut(s)	80
HaeIII	GGCC	1 cut(s)	355
HapII	CCGG	1 cut(s)	76
Hin1II	CATG	3 cut(s)	60, 218, 354
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	3 cut(s)	139, 172, 218
Hpy166II	GTNNAC	2 cut(s)	19, 244
Hpy8I	GTNNAC	2 cut(s)	19, 244
HpyAV	CCTTC	2 cut(s)	228, 281
HpyCH4IV	ACGT	1 cut(s)	300
HpyCH4V	TGCA	4 cut(s)	27, 60, 67, 115
HpyF3I	CTNAG	2 cut(s)	186, 247
HpySE526I	ACGT	1 cut(s)	300
Hsp92II	CATG	3 cut(s)	60, 218, 354
LpnPI	CCDG	3 cut(s)	89, 189, 216
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	1 cut(s)	354
MaeI	CTAG	1 cut(s)	392
MaeII	ACGT	1 cut(s)	300
MboII	GAAGA	2 cut(s)	268, 332
MhlI	GDGCHC	3 cut(s)	76, 167, 383
MluCI	AATT	3 cut(s)	171, 293, 331
MlyI	GAGTC	1 cut(s)	239
MnlI	CCTC	1 cut(s)	316
MseI	TTAA	3 cut(s)	170, 222, 329
MslI	CAYNNNNRTG	2 cut(s)	12, 120
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	76, 204
MvaI	CCWGG	1 cut(s)	204
MvnI	CGCG	1 cut(s)	158
NciI	CCSGG	1 cut(s)	76
NlaIII	CATG	3 cut(s)	60, 218, 354
NspI	RCATGY	1 cut(s)	218
NspV	TTCGAA	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	1 cut(s)	239
PpsI	GAGTC	1 cut(s)	239
Psp124BI	GAGCTC	1 cut(s)	167
Psp6I	CCWGG	1 cut(s)	202
PspGI	CCWGG	1 cut(s)	202
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	2 cut(s)	12, 120
SacI	GAGCTC	1 cut(s)	167
SaqAI	TTAA	3 cut(s)	170, 222, 329
SatI	GCNGC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	239
ScrFI	CCNGG	2 cut(s)	76, 204
SduI	GDGCHC	3 cut(s)	76, 167, 383
SetI	ASST	4 cut(s)	84, 167, 277, 303
SfaNI	GCATC	1 cut(s)	354
SfuI	TTCGAA	1 cut(s)	254
SmiMI	CAYNNNNRTG	2 cut(s)	12, 120
Sse9I	AATT	3 cut(s)	171, 293, 331
SsiI	CCGC	2 cut(s)	30, 158
SspMI	CTAG	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	74, 202
TaiI	ACGT	1 cut(s)	303
TaqI	TCGA	3 cut(s)	87, 254, 369
TasI	AATT	3 cut(s)	171, 293, 331
TatI	WGTACW	1 cut(s)	180
Tru1I	TTAA	3 cut(s)	170, 222, 329
Tru9I	TTAA	3 cut(s)	170, 222, 329
TscAI	CASTG	1 cut(s)	97
TseI	GCWGC	1 cut(s)	79
TspRI	CASTG	1 cut(s)	97
XapI	RAATTY	2 cut(s)	293, 331
XceI	RCATGY	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	18
XspI	CTAG	1 cut(s)	392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.