RLG00000014350

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005291
Physical Location & Seq
Forward (+)
51894604 .. 51895221
618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014350

Sequence Viewer

Length: 537 bp
ATGCAGTCGCTGGATGATCGGATTAGAGTTGATGAGGTTACTATAACTACCATGCTTAACTTGAGTGCCAAGTTAGAGGTGGTTTGTTATGGGAGGCAGTTGCATTCGTGTATGGTGAAAACTACCAATGATTTGAGTGGGTTCGCGGTGAGCTCGTTAATTGATATGTACTCTAAGTGCGGTTGTTTTCCTGATGCGTGGCGTGTGTTTAATGGATATGGAAGGGTGGTTGACTCGGTTTCGAAGAATGCAAGGGTGGCAGCTTGTTGTGGAGAAGGGAAATTGGACATGGCAAATGGTTTTGTAGAAGAGGGATTAAATTTGGTTGTTCGCATAGCGGAAAATGGTTTTCGATGGAATGAGCACACTTTTGCTAGTGTTTTGAGTGCTTGCTCTGGTTTGAGGAACTTCAAGCTAGGAAAGGAAGAGAGTATTGATCAAGAGGGGGAAACAGTTTCGAATGGTCATTGTGGAACAGAACTTGAAACTCAAAAATCACACAATTCGACAAATGATTCTTGGTATTTCCTCTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

179

Amino Acids

19.7

Weight (kDa)

5.21

Isoelectric Point (pI)

26.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 146
AciI CCGC 3 cut(s) 146, 180, 338
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 1 cut(s) 170
AgsI TTSAA 2 cut(s) 412, 485
AluBI AGCT 3 cut(s) 153, 263, 415
AluI AGCT 3 cut(s) 153, 263, 415
Alw21I GWGCWC 2 cut(s) 155, 366
AlwNI CAGNNNCTG 1 cut(s) 10
ApeKI GCWGC 1 cut(s) 260
ApoI RAATTY 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 127, 160
AsuII TTCGAA 2 cut(s) 242, 458
BanII GRGCYC 1 cut(s) 155
Bbv12I GWGCWC 2 cut(s) 155, 366
BbvI GCAGC 1 cut(s) 272
BccI CCATC 1 cut(s) 348
BclI TGATCA 1 cut(s) 436
BfaI CTAG 2 cut(s) 375, 416
BisI GCNGC 1 cut(s) 261
BlsI GCNGC 1 cut(s) 262
BmsI GCATC 1 cut(s) 184
Bpu14I TTCGAA 2 cut(s) 242, 458
BpuEI CTTGAG 1 cut(s) 82
BseGI GGATG 1 cut(s) 19
BseXI GCAGC 1 cut(s) 272
Bsh1236I CGCG 1 cut(s) 146
BsiHKAI GWGCWC 2 cut(s) 155, 366
BsmI GAATGC 2 cut(s) 103, 253
Bsp119I TTCGAA 2 cut(s) 242, 458
Bsp1286I GDGCHC 2 cut(s) 155, 366
Bsp143I GATC 2 cut(s) 16, 436
BspACI CCGC 3 cut(s) 146, 180, 338
BspFNI CGCG 1 cut(s) 146
BspT104I TTCGAA 2 cut(s) 242, 458
BssMI GATC 2 cut(s) 16, 436
Bst4CI ACNGT 1 cut(s) 454
Bst6I CTCTTC 2 cut(s) 303, 420
BstBI TTCGAA 2 cut(s) 242, 458
BstC8I GCNNGC 1 cut(s) 391
BstDEI CTNAG 1 cut(s) 174
BstF5I GGATG 1 cut(s) 19
BstFNI CGCG 1 cut(s) 146
BstKTI GATC 2 cut(s) 19, 439
BstMBI GATC 2 cut(s) 16, 436
BstMWI GCNNNNNNNGC 1 cut(s) 257
BstUI CGCG 1 cut(s) 146
BstV1I GCAGC 1 cut(s) 272
BtsCI GGATG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 391
CaiI CAGNNNCTG 1 cut(s) 10
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 52, 289
CviJI RGCY 3 cut(s) 153, 263, 415
CviKI_1 RGCY 3 cut(s) 153, 263, 415
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 174
DpnI GATC 2 cut(s) 18, 438
DpnII GATC 2 cut(s) 16, 436
Eam1104I CTCTTC 2 cut(s) 303, 420
EarI CTCTTC 2 cut(s) 303, 420
Ecl136II GAGCTC 1 cut(s) 153
Eco24I GRGCYC 1 cut(s) 155
Eco53kI GAGCTC 1 cut(s) 153
EcoICRI GAGCTC 1 cut(s) 153
EcoT38I GRGCYC 1 cut(s) 155
FaeI CATG 2 cut(s) 55, 292
FaiI YATR 8 cut(s) 44, 53, 90, 113, 167, 219, 290, 335
FatI CATG 2 cut(s) 51, 288
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 1 cut(s) 261
FokI GGATG 1 cut(s) 26
FriOI GRGCYC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 261
FspBI CTAG 2 cut(s) 375, 416
GluI GCNGC 1 cut(s) 261
Hin1II CATG 2 cut(s) 55, 292
HincII GTYRAC 1 cut(s) 232
HindII GTYRAC 1 cut(s) 232
HinfI GANTC 2 cut(s) 233, 515
HphI GGTGA 2 cut(s) 127, 160
Hpy166II GTNNAC 1 cut(s) 232
Hpy188I TCNGA 1 cut(s) 21
Hpy188III TCNNGA 2 cut(s) 191, 440
Hpy8I GTNNAC 1 cut(s) 232
HpyAV CCTTC 2 cut(s) 216, 269
HpyCH4III ACNGT 1 cut(s) 454
HpyCH4V TGCA 3 cut(s) 4, 103, 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 257
HpyF3I CTNAG 1 cut(s) 174
Hsp92II CATG 2 cut(s) 55, 292
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 2 cut(s) 16, 436
LpnPI CCDG 2 cut(s) 204, 381
Lsp1109I GCAGC 1 cut(s) 272
LweI GCATC 1 cut(s) 184
MaeI CTAG 2 cut(s) 375, 416
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 18, 438
MboI GATC 2 cut(s) 16, 436
MboII GAAGA 3 cut(s) 256, 320, 437
MhlI GDGCHC 2 cut(s) 155, 366
MluCI AATT 4 cut(s) 159, 281, 319, 502
MlyI GAGTC 1 cut(s) 227
MnlI CCTC 6 cut(s) 28, 70, 87, 304, 396, 436
MseI TTAA 4 cut(s) 57, 158, 210, 317
Mva1269I GAATGC 2 cut(s) 103, 253
MvnI CGCG 1 cut(s) 146
MwoI GCNNNNNNNGC 1 cut(s) 257
NdeII GATC 2 cut(s) 16, 436
NlaIII CATG 2 cut(s) 55, 292
NspV TTCGAA 2 cut(s) 242, 458
PctI GAATGC 2 cut(s) 103, 253
PfeI GAWTC 1 cut(s) 515
PkrI GCNGC 1 cut(s) 262
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp124BI GAGCTC 1 cut(s) 155
PstNI CAGNNNCTG 1 cut(s) 10
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SacI GAGCTC 1 cut(s) 155
SaqAI TTAA 4 cut(s) 57, 158, 210, 317
SatI GCNGC 1 cut(s) 261
Sau3AI GATC 2 cut(s) 16, 436
SchI GAGTC 1 cut(s) 227
SduI GDGCHC 2 cut(s) 155, 366
SetI ASST 5 cut(s) 39, 81, 155, 265, 417
SfaNI GCATC 1 cut(s) 184
SfuI TTCGAA 2 cut(s) 242, 458
SmlI CTYRAG 1 cut(s) 61
SmoI CTYRAG 1 cut(s) 61
Sse9I AATT 4 cut(s) 159, 281, 319, 502
SsiI CCGC 3 cut(s) 146, 180, 338
SspMI CTAG 2 cut(s) 375, 416
SstI GAGCTC 1 cut(s) 155
TaaI ACNGT 1 cut(s) 454
TaqI TCGA 4 cut(s) 242, 352, 458, 506
TasI AATT 4 cut(s) 159, 281, 319, 502
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 1 cut(s) 515
Tru1I TTAA 4 cut(s) 57, 158, 210, 317
Tru9I TTAA 4 cut(s) 57, 158, 210, 317
TseI GCWGC 1 cut(s) 260
XapI RAATTY 1 cut(s) 319
XcmI CCANNNNNNNNNTGG 1 cut(s) 76
XspI CTAG 2 cut(s) 375, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.