Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0005291

Physical Location & Seq

Genomic Coordinates Forward (+)

53766272 .. 53914428

Gene Structure 148157 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00204480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2037 bp

ATGCAGTCTCTGAAAGAGGCTCTCATCTCCCACGTTCAATCCATAAAATCTGGTTTAACACTGGGCATTTTCACCTCCAACCAACTCATCCACCATTACTCCAGACATGGCCTCATTCAAGACGCCCAGAAGCTGTTCGACGAAATGCCCCACCGAAACGTCTACTCTTGGAACGCCATAATCTCCACCCACATCAAATCACGCAACTTGGAACGTGCCCGGCAGCTATTCGACTCTGCTTCTTTCAAAGATTTGGTCACTTACAACTCTATGCTGTCTGGCTACACAAGCACAGAAGGGTACGAGGCTTGTGCGCTTGGGTTGTTTGCCGAAATGCAGTCGCGGGATGATCGGATTAGAGTTGATGAAGTTACTCTAACTACCATGCTTAACTTGAGTGCCAAGTTAGAGGTGGTTTGTTATGGAAAGCAGTTGCATTCGTGTATGGTGAGAACTGCCAATGATCTGAGTGGGTTTGCGGTGAGCTCTTTAATTGATATGTACTCTAAGTGCGGGTGTTTTCGTTATGCTTGGCACGTGTTTAGTGGATATAGAGGGATGGTTGACTCGGTTTCGAAGAATGCAATGGTGGCAGCTTGTTGTAGAGAAGGAAAATTGGATATGGCGGTTGATCTTTTTTGGAGAGAACCGGAGATGAACGATACTGTGTCTTGGAACACAATGATTTCAGGGTATGTGCAGAATGGTTTTGTAGAGGAGGCACTGAATTTGTTTGTTCGCATGGCGGAAGATGGATTTCGATGGAATGAGCATACTTTTGCTAGTGTTTTGAGTGCTTGCTCTGGTTTGAGGAACTTCAAACTAGGAAAGGAAGTCCATGGTTGGGTGTTGAAGAATGGGATGAGTTCTAATCCGTTTATAAGTAGTGGCATTGTTGATGTCTATTGTAAGTGTGGAAGTATGAGTTATGCAAAGTCAGTTCATGCAGCAATGGGAATTAGAAATTCTTTTTCAATCACTTCATTGATCTCGGGTCATGCCTCTCAAGGTAACCTAGTAGAAGCAAGGTTACTTTTTGATTCATTGGCTGAAAGGAGTATGGTTGTATGGACAGCTTTGTTTTCTGGATATCTCAAATCACAACAATTTGAAGCTGTATTTAAGCTTTTGAGCGAGTTCAGGGAAAAGGAAGTAATTGTTCCTGATGCTTTGATTCTCATTAGTGTGCTTGGTACCTGTGCAATTCAAGCTGCCCTGGACCCTGGGAAGCAGATTCATGCTTACATCTTGAGGAATAACATTGAAGGAGACAAGAAATTGTTCAGTGCTTTGATTGATATGTACTCAAAATCTGGGAATATTTCTTATGCGGAAAAGATTTTTAAAAGTGTTTTTGACAGAGATATAATCGTTTACAATGTGATATTAGCTGGTTATGCTCACCATGGTTGTGAAGCTAAAGCTATCCAAATCTTCAAAGAACTGTTGAAGAGAGGTATTAGGCCTGATGCAGTCACATTTTTAGCACTTCTTTCAGCTTGTCGTCACTCTTGTTTGGTGGAATTGGGTGAGCAATTTTTCTGGTCCATGACAAAAGATTATAATCTATTGCCTGAACTGGATCACTATGCATGTATGATTGACTTGTATGGCAGGGCTGATCAACTTGAGAAGGCAAAAGCATTGATAAGAAATATCCGTATAGAATTGGATACCAGTGTATGGGGGGCATTCCTGAATGCTTGTCGGGTAAATGGAAATACAATACTTGCTAGAGAGGCAGAGGAGAGACTTATAGAACTTGGAGGAGGTACTGGTGATCGGTATGTGCAGTTGGCAAATTTCTATGCTGCTGAGGGAAACTGGAAGGAGGTTGGGAGATTAAGGAAGAAGATGAAAGGGAAAGAGGTCAAGAAGGCTGCTGGTTGCAGTTGGTTATATGTGGATAATGGAGTTCATATATTTATTTCTGGTGATAAAAGTCACCCAAAAACAGAGAATATATATTTTACCTTAGCATCCTTGACTGAAGAGCTATATCAGATATCTGGGGAATCTATTGAGGTCATATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PfkB TB2_DP1_HVA22

Protein Analysis

678

Amino Acids

76.09

Weight (kDa)

7.02

Isoelectric Point (pI)

35.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	221 - 267	2.1e-11	PPR repeat family
PPR	PF01535	223 - 253	5.2e-10	PPR repeat
PPR_2	PF13041	455 - 501	2.4e-10	PPR repeat family
PPR_3	PF13812	455 - 501	3.2e-06	Pentatricopeptide repeat domain
E_motif	PF20431	577 - 633	2.7e-14	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005291)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G18840 AT3G18840
fragaria_vesca	FvH4_2g08350
malus_domestica	MD10G1080500.v1.1
prunus_persica	Prupe.8G101800_v2.0.a1
pyrus_communis	pycom10g06370
rosa_chinensis	RchiOBHm_Chr6g0263351
rosa_laevigata	RLG00000014350 RLG00000014352 RLG00000014358 RLG00000014361
rosa_multiflora	Rmu_sc0000565.1_g000003 Rmu_sc0000565.1_g000007 Rmu_sc0003785.1_g000002
rosa_roxburghii	Rroxscaffold_176G00431070 Rroxscaffold_7G00204480
rosa_rugosa	Rorug06G0004400 Rorug06G0004500 Rorug06G0004600 Rorug06G0004900
rosa_samantha	Rh6AG124100 Rh6BG118900 Rh6BG119400 Rh6CG116900 Rh6CG117400 Rh6DG105600 Rh6DG106100
rosa_wichuraiana	Rw6G010650 Rw6G010790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	881, 1563
Acc65I	GGTACC	1 cut(s)	1193
AccB1I	GGYRCC	1 cut(s)	1193
AccB7I	CCANNNNNTGG	1 cut(s)	1683
AccI	GTMKAC	1 cut(s)	162
AccII	CGCG	1 cut(s)	343
AciI	CCGC	6 cut(s)	343, 479, 513, 626, 746, 1331
AclWI	GGATC	1 cut(s)	1590
AcsI	RAATTY	3 cut(s)	727, 964, 1801
AcuI	CTGAAG	1 cut(s)	2010
AcvI	CACGTG	1 cut(s)	538
AcyI	GRCGYC	1 cut(s)	123
AfaI	GTAC	5 cut(s)	302, 503, 1195, 1304, 1774
AfiI	CCNNNNNNNGG	2 cut(s)	844, 1683
AflIII	ACRYGT	1 cut(s)	537
AjnI	CCWGG	2 cut(s)	1215, 1222
Alw21I	GWGCWC	1 cut(s)	488
Alw26I	GTCTC	3 cut(s)	12, 1263, 1744
AlwI	GGATC	1 cut(s)	1590
AlwNI	CAGNNNCTG	2 cut(s)	10, 133
Ama87I	CYCGRG	1 cut(s)	991
AoxI	GGCC	2 cut(s)	109, 1463
ApeKI	GCWGC	6 cut(s)	223, 593, 947, 1211, 1811, 1880
ApoI	RAATTY	3 cut(s)	727, 964, 1801
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
Asp700I	GAANNNNTTC	2 cut(s)	134, 1280
Asp718I	GGTACC	1 cut(s)	1193
AspLEI	GCGC	1 cut(s)	316
AspS9I	GGNCC	2 cut(s)	1219, 1545
AsuC2I	CCSGG	1 cut(s)	220
AsuHPI	GGTGA	8 cut(s)	64, 460, 493, 1394, 1541, 1790, 1937, 1946
AsuII	TTCGAA	1 cut(s)	575
AvaI	CYCGRG	1 cut(s)	991
AvaII	GGWCC	2 cut(s)	1219, 1545
BaeGI	GKGCMC	1 cut(s)	220
BaeI	ACNNNNGTAYC	2 cut(s)	1665, 1698
BanI	GGYRCC	1 cut(s)	1193
BanII	GRGCYC	1 cut(s)	488
BarI	GAAGNNNNNNTAC	2 cut(s)	1014, 1046
BbrPI	CACGTG	1 cut(s)	538
Bbv12I	GWGCWC	1 cut(s)	488
BbvCI	CCTCAGC	1 cut(s)	1815
BbvI	GCAGC	6 cut(s)	235, 605, 959, 1198, 1798, 1867
BccI	CCATC	3 cut(s)	553, 746, 756
BcgI	CGANNNNNNTGC	2 cut(s)	293, 327
BciT130I	CCWGG	2 cut(s)	1217, 1224
BciVI	GTATCC	1 cut(s)	1666
BclI	TGATCA	1 cut(s)	1621
BcnI	CCSGG	1 cut(s)	220
BcoDI	GTCTC	3 cut(s)	12, 1263, 1744
BfaI	CTAG	4 cut(s)	783, 824, 1016, 1734
BfuI	GTATCC	1 cut(s)	1666
BisI	GCNGC	6 cut(s)	224, 594, 948, 1212, 1812, 1881
BlsI	GCNGC	6 cut(s)	225, 595, 949, 1213, 1813, 1882
Bme1390I	CCNGG	3 cut(s)	220, 1217, 1224
Bme18I	GGWCC	2 cut(s)	1219, 1545
BmeT110I	CYCGRG	1 cut(s)	991
BmgT120I	GGNCC	2 cut(s)	1219, 1545
BmiI	GGNNCC	2 cut(s)	1195, 1221
BmrFI	CCNGG	3 cut(s)	220, 1217, 1224
BmrI	ACTGGG	1 cut(s)	71
BmsI	GCATC	3 cut(s)	1156, 1459, 1988
BmuI	ACTGGG	1 cut(s)	71
BpmI	CTGGAG	1 cut(s)	85
Bpu10I	CCTNAGC	2 cut(s)	1815, 1975
Bpu14I	TTCGAA	1 cut(s)	575
BpuEI	CTTGAG	4 cut(s)	415, 990, 1270, 1649
BpuMI	CCSGG	1 cut(s)	220
BsaAI	YACGTR	1 cut(s)	538
BsaBI	GATNNNNATC	1 cut(s)	1563
BsaHI	GRCGYC	1 cut(s)	123
BsaJI	CCNNGG	5 cut(s)	838, 1215, 1222, 1223, 1405
BsaWI	WCCGGW	1 cut(s)	649
BsaXI	ACNNNNNCTCC	2 cut(s)	83, 113
Bsc4I	CCNNNNNNNGG	2 cut(s)	844, 1683
Bse1I	ACTGG	5 cut(s)	66, 1584, 1677, 1780, 1829
Bse3DI	GCAATG	2 cut(s)	591, 957
Bse8I	GATNNNNATC	1 cut(s)	1563
BseBI	CCWGG	2 cut(s)	1217, 1224
BseDI	CCNNGG	5 cut(s)	838, 1215, 1222, 1223, 1405
BseGI	GGATG	5 cut(s)	87, 352, 564, 867, 1979
BseJI	GATNNNNATC	1 cut(s)	1563
BseLI	CCNNNNNNNGG	2 cut(s)	844, 1683
BseMI	GCAATG	2 cut(s)	591, 957
BseMII	CTCAG	2 cut(s)	458, 1806
BseNI	ACTGG	5 cut(s)	66, 1584, 1677, 1780, 1829
BseRI	GAGGAG	3 cut(s)	731, 1760, 1782
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	6 cut(s)	235, 605, 959, 1198, 1798, 1867
BsgI	GTGCAG	2 cut(s)	719, 1811
Bsh1236I	CGCG	1 cut(s)	343
BshFI	GGCC	2 cut(s)	111, 1465
BshNI	GGYRCC	1 cut(s)	1193
BsiHKAI	GWGCWC	1 cut(s)	488
BsiHKCI	CYCGRG	1 cut(s)	991
BsiSI	CCGG	2 cut(s)	220, 650
BslI	CCNNNNNNNGG	2 cut(s)	844, 1683
BsmAI	GTCTC	3 cut(s)	12, 1263, 1744
BsmI	GAATGC	4 cut(s)	436, 586, 1691, 1705
BsnI	GGCC	2 cut(s)	111, 1465
BsoBI	CYCGRG	1 cut(s)	991
Bsp119I	TTCGAA	1 cut(s)	575
Bsp1286I	GDGCHC	2 cut(s)	220, 488
Bsp143I	GATC	7 cut(s)	349, 463, 631, 987, 1582, 1621, 1780
Bsp19I	CCATGG	2 cut(s)	838, 1405
BspACI	CCGC	6 cut(s)	343, 479, 513, 626, 746, 1331
BspANI	GGCC	2 cut(s)	111, 1465
BspCNI	CTCAG	2 cut(s)	459, 1807
BspFNI	CGCG	1 cut(s)	343
BspLI	GGNNCC	2 cut(s)	1195, 1221
BspPI	GGATC	1 cut(s)	1590
BspQI	GCTCTTC	1 cut(s)	1986
BspT104I	TTCGAA	1 cut(s)	575
BspT107I	GGYRCC	1 cut(s)	1193
BsrDI	GCAATG	2 cut(s)	591, 957
BsrI	ACTGG	5 cut(s)	66, 1584, 1677, 1780, 1829
BssECI	CCNNGG	5 cut(s)	838, 1215, 1222, 1223, 1405
BssMI	GATC	7 cut(s)	349, 463, 631, 987, 1582, 1621, 1780
BssNI	GRCGYC	1 cut(s)	123
BssT1I	CCWWGG	2 cut(s)	838, 1405
Bst2UI	CCWGG	2 cut(s)	1217, 1224
Bst4CI	ACNGT	2 cut(s)	667, 1446
Bst6I	CTCTTC	2 cut(s)	1445, 1986
BstACI	GRCGYC	1 cut(s)	123
BstBAI	YACGTR	1 cut(s)	538
BstBI	TTCGAA	1 cut(s)	575
BstC8I	GCNNGC	1 cut(s)	799
BstDEI	CTNAG	4 cut(s)	467, 507, 1815, 1975
BstDSI	CCRYGG	2 cut(s)	838, 1405
BstEII	GGTNACC	1 cut(s)	1010
BstF5I	GGATG	5 cut(s)	87, 352, 564, 867, 1979
BstFNI	CGCG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	316
BstKTI	GATC	7 cut(s)	352, 466, 634, 990, 1585, 1624, 1783
BstMAI	GTCTC	3 cut(s)	12, 1263, 1744
BstMBI	GATC	7 cut(s)	349, 463, 631, 987, 1582, 1621, 1780
BstMWI	GCNNNNNNNGC	5 cut(s)	288, 590, 1208, 1397, 1739
BstNI	CCWGG	2 cut(s)	1217, 1224
BstNSI	RCATGY	1 cut(s)	1596
BstPI	GGTNACC	1 cut(s)	1010
BstSCI	CCNGG	3 cut(s)	218, 1215, 1222
BstSLI	GKGCMC	1 cut(s)	220
BstUI	CGCG	1 cut(s)	343
BstV1I	GCAGC	6 cut(s)	235, 605, 959, 1198, 1798, 1867
BsuI	GTATCC	1 cut(s)	1666
BsuRI	GGCC	2 cut(s)	111, 1465
BtgI	CCRYGG	2 cut(s)	838, 1405
BtsCI	GGATG	5 cut(s)	87, 352, 564, 867, 1979
BtsIMutI	CAGTG	4 cut(s)	59, 722, 1291, 1684
Cac8I	GCNNGC	1 cut(s)	799
CaiI	CAGNNNCTG	2 cut(s)	10, 133
CfoI	GCGC	1 cut(s)	316
Cfr13I	GGNCC	2 cut(s)	1219, 1545
CseI	GACGC	1 cut(s)	131
Csp6I	GTAC	5 cut(s)	301, 502, 1194, 1303, 1773
CviQI	GTAC	5 cut(s)	301, 502, 1194, 1303, 1773
DdeI	CTNAG	4 cut(s)	467, 507, 1815, 1975
DpnI	GATC	7 cut(s)	351, 465, 633, 989, 1584, 1623, 1782
DpnII	GATC	7 cut(s)	349, 463, 631, 987, 1582, 1621, 1780
DraI	TTTAAA	1 cut(s)	1345
Eam1104I	CTCTTC	2 cut(s)	1445, 1986
EarI	CTCTTC	2 cut(s)	1445, 1986
EciI	GGCGGA	1 cut(s)	761
Ecl136II	GAGCTC	1 cut(s)	486
Eco130I	CCWWGG	2 cut(s)	838, 1405
Eco147I	AGGCCT	1 cut(s)	1465
Eco24I	GRGCYC	1 cut(s)	488
Eco32I	GATATC	2 cut(s)	1091, 2007
Eco47I	GGWCC	2 cut(s)	1219, 1545
Eco53kI	GAGCTC	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	2010
Eco72I	CACGTG	1 cut(s)	538
Eco88I	CYCGRG	1 cut(s)	991
Eco91I	GGTNACC	1 cut(s)	1010
EcoICRI	GAGCTC	1 cut(s)	486
EcoO65I	GGTNACC	1 cut(s)	1010
EcoRII	CCWGG	2 cut(s)	1215, 1222
EcoRV	GATATC	2 cut(s)	1091, 2007
EcoT14I	CCWWGG	2 cut(s)	838, 1405
EcoT22I	ATGCAT	1 cut(s)	1594
EcoT38I	GRGCYC	1 cut(s)	488
ErhI	CCWWGG	2 cut(s)	838, 1405
FauI	CCCGC	2 cut(s)	336, 506
FbaI	TGATCA	1 cut(s)	1621
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	6 cut(s)	224, 594, 948, 1212, 1812, 1881
FokI	GGATG	5 cut(s)	74, 359, 571, 874, 1966
FriOI	GRGCYC	1 cut(s)	488
Fsp4HI	GCNGC	6 cut(s)	224, 594, 948, 1212, 1812, 1881
FspBI	CTAG	4 cut(s)	783, 824, 1016, 1734
GlaI	GCGC	1 cut(s)	315
GluI	GCNGC	6 cut(s)	224, 594, 948, 1212, 1812, 1881
GsuI	CTGGAG	1 cut(s)	85
HaeIII	GGCC	2 cut(s)	111, 1465
HapII	CCGG	2 cut(s)	220, 650
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	316
Hin1I	GRCGYC	1 cut(s)	123
Hin6I	GCGC	1 cut(s)	314
HinP1I	GCGC	1 cut(s)	314
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HindIII	AAGCTT	1 cut(s)	1124
HinfI	GANTC	6 cut(s)	233, 566, 1040, 1174, 1234, 2015
HpaII	CCGG	2 cut(s)	220, 650
HphI	GGTGA	8 cut(s)	64, 460, 493, 1394, 1541, 1790, 1937, 1946
Hpy166II	GTNNAC	3 cut(s)	163, 565, 1375
Hpy188I	TCNGA	4 cut(s)	12, 354, 468, 2004
Hpy188III	TCNNGA	7 cut(s)	102, 119, 1086, 1163, 1249, 1696, 1873
Hpy8I	GTNNAC	3 cut(s)	163, 565, 1375
Hpy99I	CGWCG	1 cut(s)	143
HpyAV	CCTTC	6 cut(s)	290, 602, 1259, 1627, 1822, 1870
HpyCH4III	ACNGT	2 cut(s)	667, 1446
HpyCH4IV	ACGT	4 cut(s)	33, 159, 214, 537
HpyF10VI	GCNNNNNNNGC	5 cut(s)	288, 590, 1208, 1397, 1739
HpyF3I	CTNAG	4 cut(s)	467, 507, 1815, 1975
HpySE526I	ACGT	4 cut(s)	33, 159, 214, 537
Hsp92I	GRCGYC	1 cut(s)	123
HspAI	GCGC	1 cut(s)	314
KpnI	GGTACC	1 cut(s)	1197
Ksp22I	TGATCA	1 cut(s)	1621
Kzo9I	GATC	7 cut(s)	349, 463, 631, 987, 1582, 1621, 1780
LguI	GCTCTTC	1 cut(s)	1986
Lsp1109I	GCAGC	6 cut(s)	235, 605, 959, 1198, 1798, 1867
LweI	GCATC	3 cut(s)	1156, 1459, 1988
MaeI	CTAG	4 cut(s)	783, 824, 1016, 1734
MaeII	ACGT	4 cut(s)	33, 159, 214, 537
MaeIII	GTNAC	7 cut(s)	256, 370, 1010, 1029, 1474, 1505, 1943
MalI	GATC	7 cut(s)	351, 465, 633, 989, 1584, 1623, 1782
MboI	GATC	7 cut(s)	349, 463, 631, 987, 1582, 1621, 1780
MboII	GAAGA	8 cut(s)	589, 761, 865, 1426, 1462, 1861, 1864, 2003
MhlI	GDGCHC	2 cut(s)	220, 488
MlyI	GAGTC	2 cut(s)	227, 560
MmeI	TCCRAC	1 cut(s)	102
Mph1103I	ATGCAT	1 cut(s)	1594
MroXI	GAANNNNTTC	2 cut(s)	134, 1280
MseI	TTAA	6 cut(s)	56, 390, 491, 1122, 1344, 1844
MslI	CAYNNNNRTG	2 cut(s)	1184, 1410
MspI	CCGG	2 cut(s)	220, 650
MspR9I	CCNGG	3 cut(s)	220, 1217, 1224
Mva1269I	GAATGC	4 cut(s)	436, 586, 1691, 1705
MvaI	CCWGG	2 cut(s)	1217, 1224
MvnI	CGCG	1 cut(s)	343
MwoI	GCNNNNNNNGC	5 cut(s)	288, 590, 1208, 1397, 1739
NciI	CCSGG	1 cut(s)	220
NcoI	CCATGG	2 cut(s)	838, 1405
NdeII	GATC	7 cut(s)	349, 463, 631, 987, 1582, 1621, 1780
NlaIV	GGNNCC	2 cut(s)	1195, 1221
NmuCI	GTSAC	4 cut(s)	256, 1474, 1505, 1943
NsiI	ATGCAT	1 cut(s)	1594
NspI	RCATGY	1 cut(s)	1596
NspV	TTCGAA	1 cut(s)	575
PasI	CCCWGGG	1 cut(s)	1223
PceI	AGGCCT	1 cut(s)	1465
PciSI	GCTCTTC	1 cut(s)	1986
PctI	GAATGC	4 cut(s)	436, 586, 1691, 1705
PdmI	GAANNNNTTC	2 cut(s)	134, 1280
PfeI	GAWTC	4 cut(s)	1040, 1174, 1234, 2015
PflMI	CCANNNNNTGG	1 cut(s)	1683
PkrI	GCNGC	6 cut(s)	225, 595, 949, 1213, 1813, 1882
PleI	GAGTC	2 cut(s)	227, 560
PmaCI	CACGTG	1 cut(s)	538
PmlI	CACGTG	1 cut(s)	538
PpsI	GAGTC	2 cut(s)	227, 560
Ppu21I	YACGTR	1 cut(s)	538
PsiI	TTATAA	2 cut(s)	881, 1563
Psp124BI	GAGCTC	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	1215, 1222
PspCI	CACGTG	1 cut(s)	538
PspEI	GGTNACC	1 cut(s)	1010
PspGI	CCWGG	2 cut(s)	1215, 1222
PspN4I	GGNNCC	2 cut(s)	1195, 1221
PspPI	GGNCC	2 cut(s)	1219, 1545
PstNI	CAGNNNCTG	2 cut(s)	10, 133
RsaI	GTAC	5 cut(s)	302, 503, 1195, 1304, 1774
RsaNI	GTAC	5 cut(s)	301, 502, 1194, 1303, 1773
RseI	CAYNNNNRTG	2 cut(s)	1184, 1410
SacI	GAGCTC	1 cut(s)	488
SapI	GCTCTTC	1 cut(s)	1986
SaqAI	TTAA	6 cut(s)	56, 390, 491, 1122, 1344, 1844
SatI	GCNGC	6 cut(s)	224, 594, 948, 1212, 1812, 1881
Sau3AI	GATC	7 cut(s)	349, 463, 631, 987, 1582, 1621, 1780
Sau96I	GGNCC	2 cut(s)	1219, 1545
SchI	GAGTC	2 cut(s)	227, 560
ScrFI	CCNGG	3 cut(s)	220, 1217, 1224
SduI	GDGCHC	2 cut(s)	220, 488
SfaNI	GCATC	3 cut(s)	1156, 1459, 1988
SfuI	TTCGAA	1 cut(s)	575
SinI	GGWCC	2 cut(s)	1219, 1545
SmiMI	CAYNNNNRTG	2 cut(s)	1184, 1410
SmlI	CTYRAG	4 cut(s)	394, 1005, 1249, 1628
SmoI	CTYRAG	4 cut(s)	394, 1005, 1249, 1628
SseBI	AGGCCT	1 cut(s)	1465
SsiI	CCGC	6 cut(s)	343, 479, 513, 626, 746, 1331
SspI	AATATT	1 cut(s)	1321
SspMI	CTAG	4 cut(s)	783, 824, 1016, 1734
SstI	GAGCTC	1 cut(s)	488
StuI	AGGCCT	1 cut(s)	1465
StyD4I	CCNGG	3 cut(s)	218, 1215, 1222
StyI	CCWWGG	2 cut(s)	838, 1405
TaaI	ACNGT	2 cut(s)	667, 1446
TaiI	ACGT	4 cut(s)	36, 162, 217, 540
TaqI	TCGA	4 cut(s)	138, 231, 575, 760
TatI	WGTACW	2 cut(s)	501, 1302
TfiI	GAWTC	4 cut(s)	1040, 1174, 1234, 2015
Tru1I	TTAA	6 cut(s)	56, 390, 491, 1122, 1344, 1844
Tru9I	TTAA	6 cut(s)	56, 390, 491, 1122, 1344, 1844
TscAI	CASTG	4 cut(s)	66, 729, 1291, 1684
TseFI	GTSAC	4 cut(s)	256, 1474, 1505, 1943
TseI	GCWGC	6 cut(s)	223, 593, 947, 1211, 1811, 1880
Tsp45I	GTSAC	4 cut(s)	256, 1474, 1505, 1943
TspDTI	ATGAA	8 cut(s)	381, 671, 932, 972, 1032, 1226, 1871, 1907
TspGWI	ACGGA	2 cut(s)	864, 1649
TspRI	CASTG	4 cut(s)	66, 729, 1291, 1684
Van91I	CCANNNNNTGG	1 cut(s)	1683
VpaK11BI	GGWCC	2 cut(s)	1219, 1545
XapI	RAATTY	3 cut(s)	727, 964, 1801
XceI	RCATGY	1 cut(s)	1596
XcmI	CCANNNNNNNNNTGG	1 cut(s)	409
XmiI	GTMKAC	1 cut(s)	162
XmnI	GAANNNNTTC	2 cut(s)	134, 1280
XspI	CTAG	4 cut(s)	783, 824, 1016, 1734
Zsp2I	ATGCAT	1 cut(s)	1594

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.