FvH4_2g09801

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0005898
Physical Location & Seq
Forward (+)
8675853 .. 8678589
2737 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g09801.t1

Sequence Viewer

Length: 975 bp
ATGTCCAGAAAGCCACATATTCAGATCCGTTGTACTGTGCAGCCAATGTTGGAAACAATGCAGATAGTTAAGGACAGCCACCTGGAGTTGCTCCGGAAAACTCCATTTGGGCCATTGTTAGAAGCATTTCGCAATGGCACAATTACCAAATCACATTGTAAAGATTCTCACACTCCCATACTAAAATTGATCCAAACTTTTAATCCAGAGACCACAAGTTTTCAGTTTGGTTCTAGAGATGTTGCTATAAGTACCAAAGACATCTCTCAGATTCTTGGACTGTCTCAACATGGTGAAGCGGTTCTATTCAGGGCTCTGGGTCCAAATAGATCATACAAATCGGATTTCACTGGGAGATATTTCTTGAGAGAAAAGAAGCCACGGAACCGCAAATTGATACACAGTCTACTGATAAATTTACTGAATGGGAACGAACGAACAGATATAGAAGATGTAGTACGTCTTACCCTCATGGAGTTGTTCATTACTTTCCTGTTTGCTCAACCACAAATTTCCTGGGATCTAATGAAATATTGTGAGGACTTTGAAAACCTTTCAAAATATTCATGGGCAGATGCAGTGCGAGAGTTCTTAAATAAGTCTTTGAAAGTCCTGAACAAATTTGATATTTATGGATGCGGGCTTCTTATACCATTTTGGTTGTGTGAAAAAACAAATATCATCCAACCAATCAGTGGGAGGGAGGTAGTTGAGGGACATGTACCAACCCTAATCAAATGGAGCCTTCCAGAGCTCAACACCAAAATGCAACAAACAGCTATCTGTGCTATTCAGCCTTTCTTCAAGGTGCAAGATGGCGTTAAAGAGGGAATAAATGGTGAAAGTGAAATACAAGAGCACAAGGAAGGAGAAGTCGATCAAGATGAGCTAAAGAAGGTGGAGATTAAGGGAAGGATCAAGCAAACAATTACAGGAAGAGGTAGAGGAAAGAAGAGAGCTCCAACACAACGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

325

Amino Acids

37.27

Weight (kDa)

9.26

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 56 - 257 1.6e-12 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 695
AccI GTMKAC 1 cut(s) 406
AccIII TCCGGA 1 cut(s) 93
AciI CCGC 3 cut(s) 299, 388, 639
AclWI GGATC 4 cut(s) 19, 184, 528, 923
AcsI RAATTY 3 cut(s) 415, 510, 620
AfaI GTAC 4 cut(s) 34, 253, 459, 723
AfiI CCNNNNNNNGG 1 cut(s) 695
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 4 cut(s) 548, 558, 607, 805
AjnI CCWGG 2 cut(s) 81, 515
AluBI AGCT 4 cut(s) 754, 779, 889, 959
AluI AGCT 4 cut(s) 754, 779, 889, 959
Alw21I GWGCWC 3 cut(s) 756, 861, 961
Alw26I GTCTC 2 cut(s) 203, 288
AlwI GGATC 4 cut(s) 19, 184, 528, 923
Aor13HI TCCGGA 1 cut(s) 93
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 1 cut(s) 40
ApoI RAATTY 3 cut(s) 415, 510, 620
Asp700I GAANNNNTTC 2 cut(s) 126, 300
AspS9I GGNCC 2 cut(s) 110, 320
AsuHPI GGTGA 2 cut(s) 305, 851
AvaII GGWCC 1 cut(s) 320
BanII GRGCYC 3 cut(s) 316, 756, 961
BarI GAAGNNNNNNTAC 2 cut(s) 441, 473
Bbv12I GWGCWC 3 cut(s) 756, 861, 961
BbvI GCAGC 1 cut(s) 52
BccI CCATC 1 cut(s) 809
BciT130I CCWGG 2 cut(s) 83, 517
BcoDI GTCTC 2 cut(s) 203, 288
BfaI CTAG 1 cut(s) 234
BisI GCNGC 1 cut(s) 41
BlsI GCNGC 1 cut(s) 42
Bme1390I CCNGG 2 cut(s) 83, 517
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 2 cut(s) 110, 320
BmiI GGNNCC 3 cut(s) 321, 386, 743
BmrFI CCNGG 2 cut(s) 83, 517
BmrI ACTGGG 1 cut(s) 360
BmsI GCATC 2 cut(s) 565, 626
BmuI ACTGGG 1 cut(s) 360
BpmI CTGGAG 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 385
BsaI GGTCTC 1 cut(s) 203
BsaJI CCNNGG 2 cut(s) 380, 516
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 1 cut(s) 695
Bse1I ACTGG 1 cut(s) 355
Bse3DI GCAATG 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 93
BseBI CCWGG 2 cut(s) 83, 517
BseDI CCNNGG 2 cut(s) 380, 516
BseGI GGATG 2 cut(s) 641, 681
BseLI CCNNNNNNNGG 1 cut(s) 695
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 355
BseXI GCAGC 1 cut(s) 52
BsgI GTGCAG 1 cut(s) 59
BshFI GGCC 1 cut(s) 112
BsiHKAI GWGCWC 3 cut(s) 756, 861, 961
BsiSI CCGG 1 cut(s) 94
BslFI GGGAC 1 cut(s) 729
BslI CCNNNNNNNGG 1 cut(s) 695
BsmAI GTCTC 2 cut(s) 203, 288
BsmFI GGGAC 1 cut(s) 729
BsnI GGCC 1 cut(s) 112
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 4 cut(s) 316, 756, 861, 961
Bsp13I TCCGGA 1 cut(s) 93
Bsp143I GATC 6 cut(s) 24, 189, 329, 520, 877, 915
BspACI CCGC 3 cut(s) 299, 388, 639
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 321, 386, 743
BspPI GGATC 4 cut(s) 19, 184, 528, 923
BspTNI GGTCTC 1 cut(s) 203
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 355
BssECI CCNNGG 2 cut(s) 380, 516
BssMI GATC 6 cut(s) 24, 189, 329, 520, 877, 915
Bst2UI CCWGG 2 cut(s) 83, 517
Bst4CI ACNGT 3 cut(s) 37, 282, 404
Bst6I CTCTTC 2 cut(s) 931, 947
BstC8I GCNNGC 1 cut(s) 641
BstDEI CTNAG 1 cut(s) 267
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 2 cut(s) 641, 681
BstKTI GATC 6 cut(s) 27, 192, 332, 523, 880, 918
BstMAI GTCTC 2 cut(s) 203, 288
BstMBI GATC 6 cut(s) 24, 189, 329, 520, 877, 915
BstMWI GCNNNNNNNGC 1 cut(s) 785
BstNI CCWGG 2 cut(s) 83, 517
BstNSI RCATGY 1 cut(s) 722
BstSCI CCNGG 2 cut(s) 81, 515
BstV1I GCAGC 1 cut(s) 52
BstX2I RGATCY 2 cut(s) 24, 520
BstYI RGATCY 2 cut(s) 24, 520
BsuRI GGCC 1 cut(s) 112
BtgI CCRYGG 1 cut(s) 380
BtsCI GGATG 2 cut(s) 641, 681
BtsI GCAGTG 1 cut(s) 585
BtsIMutI CAGTG 3 cut(s) 348, 585, 700
Cac8I GCNNGC 1 cut(s) 641
Cfr13I GGNCC 2 cut(s) 110, 320
Csp6I GTAC 4 cut(s) 33, 252, 458, 722
CviAII CATG 4 cut(s) 290, 472, 567, 719
CviQI GTAC 4 cut(s) 33, 252, 458, 722
DdeI CTNAG 1 cut(s) 267
DpnI GATC 6 cut(s) 26, 191, 331, 522, 879, 917
DpnII GATC 6 cut(s) 24, 189, 329, 520, 877, 915
Eam1104I CTCTTC 2 cut(s) 931, 947
EarI CTCTTC 2 cut(s) 931, 947
Ecl136II GAGCTC 2 cut(s) 754, 959
Eco24I GRGCYC 3 cut(s) 316, 756, 961
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 320
Eco53kI GAGCTC 2 cut(s) 754, 959
EcoICRI GAGCTC 2 cut(s) 754, 959
EcoRII CCWGG 2 cut(s) 81, 515
EcoT38I GRGCYC 3 cut(s) 316, 756, 961
FaeI CATG 4 cut(s) 293, 475, 570, 722
FaqI GGGAC 1 cut(s) 729
FatI CATG 4 cut(s) 289, 471, 566, 718
FauI CCCGC 1 cut(s) 632
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 41
FokI GGATG 2 cut(s) 648, 668
FriOI GRGCYC 3 cut(s) 316, 756, 961
Fsp4HI GCNGC 1 cut(s) 41
FspBI CTAG 1 cut(s) 234
GluI GCNGC 1 cut(s) 41
GsuI CTGGAG 1 cut(s) 104
HaeIII GGCC 1 cut(s) 112
HapII CCGG 1 cut(s) 94
Hin1II CATG 4 cut(s) 293, 475, 570, 722
HinfI GANTC 2 cut(s) 164, 271
HpaII CCGG 1 cut(s) 94
HphI GGTGA 2 cut(s) 305, 851
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 3 cut(s) 24, 270, 343
Hpy188III TCNNGA 8 cut(s) 6, 94, 206, 234, 364, 613, 749, 881
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 4 cut(s) 755, 860, 889, 906
HpyCH4III ACNGT 3 cut(s) 37, 282, 404
HpyCH4IV ACGT 1 cut(s) 460
HpyCH4V TGCA 5 cut(s) 40, 61, 578, 769, 811
HpyF10VI GCNNNNNNNGC 1 cut(s) 785
HpyF3I CTNAG 1 cut(s) 267
HpySE526I ACGT 1 cut(s) 460
Hsp92II CATG 4 cut(s) 293, 475, 570, 722
Kpn2I TCCGGA 1 cut(s) 93
Kzo9I GATC 6 cut(s) 24, 189, 329, 520, 877, 915
LmnI GCTCC 3 cut(s) 96, 741, 964
Lsp1109I GCAGC 1 cut(s) 52
LweI GCATC 2 cut(s) 565, 626
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 460
MalI GATC 6 cut(s) 26, 191, 331, 522, 879, 917
MboI GATC 6 cut(s) 24, 189, 329, 520, 877, 915
MboII GAAGA 4 cut(s) 461, 793, 948, 964
MflI RGATCY 2 cut(s) 24, 520
MhlI GDGCHC 4 cut(s) 316, 756, 861, 961
MluCI AATT 7 cut(s) 141, 185, 392, 415, 510, 620, 927
MmeI TCCRAC 2 cut(s) 30, 709
MnlI CCTC 8 cut(s) 479, 532, 693, 697, 706, 820, 932, 938
MroI TCCGGA 1 cut(s) 93
MroXI GAANNNNTTC 2 cut(s) 126, 300
MseI TTAA 5 cut(s) 69, 201, 593, 822, 906
MslI CAYNNNNRTG 2 cut(s) 764, 970
MspI CCGG 1 cut(s) 94
MspR9I CCNGG 2 cut(s) 83, 517
MvaI CCWGG 2 cut(s) 83, 517
MwoI GCNNNNNNNGC 1 cut(s) 785
NdeII GATC 6 cut(s) 24, 189, 329, 520, 877, 915
NlaIII CATG 4 cut(s) 293, 475, 570, 722
NlaIV GGNNCC 3 cut(s) 321, 386, 743
NspI RCATGY 1 cut(s) 722
PciI ACATGT 1 cut(s) 718
PdmI GAANNNNTTC 2 cut(s) 126, 300
PfeI GAWTC 2 cut(s) 164, 271
PflMI CCANNNNNTGG 1 cut(s) 695
PkrI GCNGC 1 cut(s) 42
PscI ACATGT 1 cut(s) 718
Psp124BI GAGCTC 2 cut(s) 756, 961
Psp6I CCWGG 2 cut(s) 81, 515
PspGI CCWGG 2 cut(s) 81, 515
PspN4I GGNNCC 3 cut(s) 321, 386, 743
PspPI GGNCC 2 cut(s) 110, 320
PsuI RGATCY 2 cut(s) 24, 520
RsaI GTAC 4 cut(s) 34, 253, 459, 723
RsaNI GTAC 4 cut(s) 33, 252, 458, 722
RseI CAYNNNNRTG 2 cut(s) 764, 970
SacI GAGCTC 2 cut(s) 756, 961
SaqAI TTAA 5 cut(s) 69, 201, 593, 822, 906
SatI GCNGC 1 cut(s) 41
Sau3AI GATC 6 cut(s) 24, 189, 329, 520, 877, 915
Sau96I GGNCC 2 cut(s) 110, 320
ScrFI CCNGG 2 cut(s) 83, 517
SduI GDGCHC 4 cut(s) 316, 756, 861, 961
SfaNI GCATC 2 cut(s) 565, 626
SinI GGWCC 1 cut(s) 320
SmiMI CAYNNNNRTG 2 cut(s) 764, 970
SmlI CTYRAG 1 cut(s) 364
SmoI CTYRAG 1 cut(s) 364
Sse9I AATT 7 cut(s) 141, 185, 392, 415, 510, 620, 927
SsiI CCGC 3 cut(s) 299, 388, 639
SspI AATATT 2 cut(s) 533, 563
SspMI CTAG 1 cut(s) 234
SstI GAGCTC 2 cut(s) 756, 961
StyD4I CCNGG 2 cut(s) 81, 515
TaaI ACNGT 3 cut(s) 37, 282, 404
TaiI ACGT 1 cut(s) 463
TaqI TCGA 1 cut(s) 876
TasI AATT 7 cut(s) 141, 185, 392, 415, 510, 620, 927
TatI WGTACW 1 cut(s) 32
TfiI GAWTC 2 cut(s) 164, 271
Tru1I TTAA 5 cut(s) 69, 201, 593, 822, 906
Tru9I TTAA 5 cut(s) 69, 201, 593, 822, 906
TscAI CASTG 3 cut(s) 355, 585, 700
TseI GCWGC 1 cut(s) 40
TspDTI ATGAA 3 cut(s) 472, 542, 555
TspGWI ACGGA 2 cut(s) 17, 397
TspRI CASTG 3 cut(s) 355, 585, 700
Van91I CCANNNNNTGG 1 cut(s) 695
VpaK11BI GGWCC 1 cut(s) 320
XapI RAATTY 3 cut(s) 415, 510, 620
XbaI TCTAGA 1 cut(s) 233
XceI RCATGY 1 cut(s) 722
XcmI CCANNNNNNNNNTGG 2 cut(s) 513, 692
XmiI GTMKAC 1 cut(s) 406
XmnI GAANNNNTTC 2 cut(s) 126, 300
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.