Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004324.1

Orthogroup ID

OG0005898

Physical Location & Seq

Genomic Coordinates Forward (+)

54538 .. 55342

Gene Structure 805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004324.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

atgaatgatgcacgaaagaaaggaaagaaagatcaattgcaagatgaagttcatgatgaagtggggttgaatcaattggtttttgatccgctattgggtagtatggcacaaagcgactatatattcttcccagtaatatcaaagtttcactacactctcctcgtcctaaaccaaaatgagaaaaagtggacacattacaaccccttaaggaagagatcagaactgcatattgatccatgctatgaggttgccaagcaaatgcatcaattgatacaagaatggttccatataacccaaaaagaagctccaagagcactgctaaatggaacaaaaaggaagaagctggggaaaagggaagactgggtggaagttcctcttagtgaagatgaaaaaagaactctaacttggatgatggataacaatatcgacttcaaaatagagaacgatcgtataagtccgcaacaggactttaaatcattggattgcggcatatttgtaatgtactacatgaatcaactttctcaaggtcttcaacttgaaaaagagatcacagaatgcagaatgcgggaattccgaaaaaatcttattaaactccttttggatcatgaaaatggctggaaacagacctcaaccacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

212

Amino Acids

25.33

Weight (kDa)

7.06

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005898)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09801 FvH4_2g09801 FvH4_2g09802 FvH4_2g10140 FvH4_2g10140 FvH4_2g10140
rosa_chinensis	RchiOBHm_Chr6g0266141 RchiOBHm_Chr6g0266151
rosa_laevigata	RLG00000014112 RLG00000014113
rosa_multiflora	Rmu_sc0004324.1_g000010 Rmu_sc0012594.1_g000003
rosa_roxburghii	Rroxscaffold_174G00435240 Rroxscaffold_174G00435320 Rroxscaffold_2G00113790 Rroxscaffold_7G00201870 Rroxscaffold_7G00201900
rosa_rugosa	Rorug06G0024300
rosa_samantha	Rh6AG144900 Rh6AG145000 Rh6BG145600 Rh6BG145700 Rh6CG142000 Rh6CG142100 Rh6DG130000 Rh6DG130100
rosa_wichuraiana	Rw6G012510 Rw6G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	89, 458, 486, 565
AclWI	GGATC	3 cut(s)	80, 227, 609
AcsI	RAATTY	1 cut(s)	569
AfaI	GTAC	1 cut(s)	503
AfiI	CCNNNNNNNGG	1 cut(s)	95
AflII	CTTAAG	1 cut(s)	205
AgsI	TTSAA	4 cut(s)	70, 433, 533, 539
AjuI	GAANNNNNNNTTGG	2 cut(s)	388, 420
AluBI	AGCT	2 cut(s)	305, 343
AluI	AGCT	2 cut(s)	305, 343
Alw21I	GWGCWC	1 cut(s)	316
AlwI	GGATC	3 cut(s)	80, 227, 609
ApoI	RAATTY	1 cut(s)	569
BbsI	GAAGAC	2 cut(s)	363, 521
Bbv12I	GWGCWC	1 cut(s)	316
BccI	CCATC	1 cut(s)	406
BfrI	CTTAAG	1 cut(s)	205
BisI	GCNGC	1 cut(s)	487
BlsI	GCNGC	1 cut(s)	488
BmiI	GGNNCC	1 cut(s)	284
BmrI	ACTGGG	2 cut(s)	125, 370
BmsI	GCATC	1 cut(s)	271
BmuI	ACTGGG	2 cut(s)	125, 370
BpiI	GAAGAC	2 cut(s)	363, 521
BpuEI	CTTGAG	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	1 cut(s)	95
Bse1I	ACTGG	2 cut(s)	131, 365
BseGI	GGATG	1 cut(s)	414
BseLI	CCNNNNNNNGG	1 cut(s)	95
BseNI	ACTGG	2 cut(s)	131, 365
BseRI	GAGGAG	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	343
Bsh1285I	CGRYCG	1 cut(s)	448
BsiEI	CGRYCG	1 cut(s)	448
BsiHKAI	GWGCWC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	95
BsmI	GAATGC	2 cut(s)	560, 567
Bsp1286I	GDGCHC	1 cut(s)	316
Bsp143I	GATC	7 cut(s)	31, 85, 215, 232, 445, 546, 601
BspACI	CCGC	4 cut(s)	89, 458, 486, 565
BspHI	TCATGA	2 cut(s)	52, 604
BspLI	GGNNCC	1 cut(s)	284
BspPI	GGATC	3 cut(s)	80, 227, 609
BspTI	CTTAAG	1 cut(s)	205
BsrI	ACTGG	2 cut(s)	131, 365
BssMI	GATC	7 cut(s)	31, 85, 215, 232, 445, 546, 601
Bst6I	CTCTTC	1 cut(s)	206
BstAFI	CTTAAG	1 cut(s)	205
BstDEI	CTNAG	1 cut(s)	377
BstF5I	GGATG	1 cut(s)	414
BstKTI	GATC	7 cut(s)	34, 88, 218, 235, 448, 549, 604
BstMBI	GATC	7 cut(s)	31, 85, 215, 232, 445, 546, 601
BstMCI	CGRYCG	1 cut(s)	448
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstV2I	GAAGAC	2 cut(s)	363, 521
BtsCI	GGATG	1 cut(s)	414
BtsI	GCAGTG	1 cut(s)	314
BtsIMutI	CAGTG	1 cut(s)	314
CciI	TCATGA	2 cut(s)	52, 604
Csp6I	GTAC	1 cut(s)	502
CviAII	CATG	5 cut(s)	53, 237, 508, 605, 636
CviJI	RGCY	3 cut(s)	305, 343, 615
CviKI_1	RGCY	3 cut(s)	305, 343, 615
CviQI	GTAC	1 cut(s)	502
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	7 cut(s)	33, 87, 217, 234, 447, 548, 603
DpnII	GATC	7 cut(s)	31, 85, 215, 232, 445, 546, 601
DraI	TTTAAA	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EcoRI	GAATTC	1 cut(s)	569
EcoT22I	ATGCAT	1 cut(s)	264
FaeI	CATG	5 cut(s)	56, 240, 511, 608, 639
FalI	AAGNNNNNCTT	2 cut(s)	360, 392
FatI	CATG	5 cut(s)	52, 236, 507, 604, 635
FauI	CCCGC	1 cut(s)	558
Fnu4HI	GCNGC	1 cut(s)	487
FokI	GGATG	1 cut(s)	421
Fsp4HI	GCNGC	1 cut(s)	487
GluI	GCNGC	1 cut(s)	487
GsaI	CCCAGC	1 cut(s)	347
Hin1II	CATG	5 cut(s)	56, 240, 511, 608, 639
HinfI	GANTC	2 cut(s)	70, 511
Hpy166II	GTNNAC	1 cut(s)	189
Hpy188I	TCNGA	2 cut(s)	220, 575
Hpy188III	TCNNGA	2 cut(s)	53, 605
Hpy8I	GTNNAC	1 cut(s)	189
HpyCH4V	TGCA	5 cut(s)	11, 40, 226, 262, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	1 cut(s)	377
Hsp92II	CATG	5 cut(s)	56, 240, 511, 608, 639
Kzo9I	GATC	7 cut(s)	31, 85, 215, 232, 445, 546, 601
LmnI	GCTCC	1 cut(s)	310
LpnPI	CCDG	5 cut(s)	144, 329, 346, 449, 601
LweI	GCATC	1 cut(s)	271
MalI	GATC	7 cut(s)	33, 87, 217, 234, 447, 548, 603
MboI	GATC	7 cut(s)	31, 85, 215, 232, 445, 546, 601
MboII	GAAGA	6 cut(s)	118, 223, 349, 368, 395, 521
MfeI	CAATTG	3 cut(s)	35, 74, 266
MhlI	GDGCHC	1 cut(s)	316
MluCI	AATT	4 cut(s)	35, 74, 266, 569
MnlI	CCTC	4 cut(s)	170, 238, 384, 637
Mph1103I	ATGCAT	1 cut(s)	264
MseI	TTAA	3 cut(s)	206, 471, 588
MslI	CAYNNNNRTG	1 cut(s)	609
MspCI	CTTAAG	1 cut(s)	205
MunI	CAATTG	3 cut(s)	35, 74, 266
Mva1269I	GAATGC	2 cut(s)	560, 567
MwoI	GCNNNNNNNGC	1 cut(s)	311
NdeII	GATC	7 cut(s)	31, 85, 215, 232, 445, 546, 601
NlaIII	CATG	5 cut(s)	56, 240, 511, 608, 639
NlaIV	GGNNCC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	264
PagI	TCATGA	2 cut(s)	52, 604
PctI	GAATGC	2 cut(s)	560, 567
PfeI	GAWTC	2 cut(s)	70, 511
PkrI	GCNGC	1 cut(s)	488
Ple19I	CGATCG	1 cut(s)	448
PspFI	CCCAGC	1 cut(s)	343
PspN4I	GGNNCC	1 cut(s)	284
PvuI	CGATCG	1 cut(s)	448
RsaI	GTAC	1 cut(s)	503
RsaNI	GTAC	1 cut(s)	502
RseI	CAYNNNNRTG	1 cut(s)	609
SaqAI	TTAA	3 cut(s)	206, 471, 588
SatI	GCNGC	1 cut(s)	487
Sau3AI	GATC	7 cut(s)	31, 85, 215, 232, 445, 546, 601
SduI	GDGCHC	1 cut(s)	316
SetI	ASST	5 cut(s)	249, 307, 345, 529, 629
SfaNI	GCATC	1 cut(s)	271
SmiMI	CAYNNNNRTG	1 cut(s)	609
SmlI	CTYRAG	2 cut(s)	205, 522
SmoI	CTYRAG	2 cut(s)	205, 522
Sse9I	AATT	4 cut(s)	35, 74, 266, 569
SsiI	CCGC	4 cut(s)	89, 458, 486, 565
TaqI	TCGA	1 cut(s)	426
TasI	AATT	4 cut(s)	35, 74, 266, 569
TatI	WGTACW	1 cut(s)	501
TauI	GCSGC	1 cut(s)	489
TfiI	GAWTC	2 cut(s)	70, 511
Tru1I	TTAA	3 cut(s)	206, 471, 588
Tru9I	TTAA	3 cut(s)	206, 471, 588
TscAI	CASTG	1 cut(s)	321
TspDTI	ATGAA	7 cut(s)	17, 41, 60, 72, 402, 524, 621
TspRI	CASTG	1 cut(s)	321
Vha464I	CTTAAG	1 cut(s)	205
XapI	RAATTY	1 cut(s)	569
Zsp2I	ATGCAT	1 cut(s)	264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.