Plant mobile domain
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_2g09801 FvH4_2g09801 FvH4_2g09802 FvH4_2g10140 FvH4_2g10140 FvH4_2g10140 |
| rosa_chinensis | RchiOBHm_Chr6g0266141 RchiOBHm_Chr6g0266151 |
| rosa_laevigata | RLG00000014112 RLG00000014113 |
| rosa_multiflora | Rmu_sc0004324.1_g000010 Rmu_sc0012594.1_g000003 |
| rosa_roxburghii | Rroxscaffold_174G00435240 Rroxscaffold_174G00435320 Rroxscaffold_2G00113790 Rroxscaffold_7G00201870 Rroxscaffold_7G00201900 |
| rosa_rugosa | Rorug06G0024300 |
| rosa_samantha | Rh6AG144900 Rh6AG145000 Rh6BG145600 Rh6BG145700 Rh6CG142000 Rh6CG142100 Rh6DG130000 Rh6DG130100 |
| rosa_wichuraiana | Rw6G012510 Rw6G012520 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 137, 1930 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 692 |
| AccBSI | CCGCTC | 1 cut(s) | 1467 |
| AccIII | TCCGGA | 1 cut(s) | 2133 |
| AciI | CCGC | 5 cut(s) | 61, 636, 1467, 2018, 2046 |
| AclWI | GGATC | 9 cut(s) | 1151, 1164, 1217, 1253, 1266, 1439, 1784, 1983, 2169 |
| AcoI | YGGCCR | 2 cut(s) | 110, 1096 |
| AcsI | RAATTY | 4 cut(s) | 24, 617, 624, 2129 |
| AcvI | CACGTG | 1 cut(s) | 1490 |
| AfaI | GTAC | 4 cut(s) | 232, 456, 1182, 2063 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 290, 316, 692, 1121 |
| AflIII | ACRYGT | 1 cut(s) | 1487 |
| AjnI | CCWGG | 1 cut(s) | 512 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1442, 1474 |
| AluBI | AGCT | 9 cut(s) | 440, 475, 751, 793, 886, 1347, 1648, 1862, 2175 |
| AluI | AGCT | 9 cut(s) | 440, 475, 751, 793, 886, 1347, 1648, 1862, 2175 |
| Alw21I | GWGCWC | 2 cut(s) | 858, 1349 |
| Alw26I | GTCTC | 3 cut(s) | 203, 487, 1116 |
| AlwI | GGATC | 9 cut(s) | 1151, 1164, 1217, 1253, 1266, 1439, 1784, 1983, 2169 |
| Ama87I | CYCGRG | 1 cut(s) | 316 |
| Aor13HI | TCCGGA | 1 cut(s) | 2133 |
| AoxI | GGCC | 2 cut(s) | 110, 1096 |
| ApeKI | GCWGC | 4 cut(s) | 40, 394, 1147, 1873 |
| ApoI | RAATTY | 4 cut(s) | 24, 617, 624, 2129 |
| AseI | ATTAAT | 1 cut(s) | 1394 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 126, 300, 1427 |
| AsuC2I | CCSGG | 2 cut(s) | 317, 318 |
| AsuHPI | GGTGA | 3 cut(s) | 305, 848, 1432 |
| AsuNHI | GCTAGC | 1 cut(s) | 1529 |
| AvaI | CYCGRG | 1 cut(s) | 316 |
| BalI | TGGCCA | 2 cut(s) | 112, 1098 |
| BamHI | GGATCC | 2 cut(s) | 1156, 1258 |
| BanI | GGYRCC | 2 cut(s) | 137, 1930 |
| BanII | GRGCYC | 3 cut(s) | 323, 1331, 1349 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 438, 470 |
| BauI | CACGAG | 2 cut(s) | 857, 1608 |
| BbrPI | CACGTG | 1 cut(s) | 1490 |
| BbsI | GAAGAC | 3 cut(s) | 264, 543, 2081 |
| Bbv12I | GWGCWC | 2 cut(s) | 858, 1349 |
| BbvI | GCAGC | 4 cut(s) | 27, 381, 1159, 1860 |
| BccI | CCATC | 5 cut(s) | 318, 730, 806, 1010, 1963 |
| BceAI | ACGGC | 1 cut(s) | 284 |
| BciT130I | CCWGG | 1 cut(s) | 514 |
| BciVI | GTATCC | 1 cut(s) | 1740 |
| BcnI | CCSGG | 2 cut(s) | 317, 318 |
| BcoDI | GTCTC | 3 cut(s) | 203, 487, 1116 |
| BfaI | CTAG | 3 cut(s) | 234, 1350, 1530 |
| BfmI | CTRYAG | 3 cut(s) | 441, 1128, 1521 |
| BfuI | GTATCC | 1 cut(s) | 1740 |
| BglII | AGATCT | 1 cut(s) | 2140 |
| BisI | GCNGC | 5 cut(s) | 41, 395, 1148, 1874, 2047 |
| BlpI | GCTNAGC | 1 cut(s) | 1809 |
| BlsI | GCNGC | 5 cut(s) | 42, 396, 1149, 1875, 2048 |
| Bme1390I | CCNGG | 3 cut(s) | 317, 318, 514 |
| BmeT110I | CYCGRG | 1 cut(s) | 316 |
| BmiI | GGNNCC | 5 cut(s) | 139, 740, 1158, 1260, 1932 |
| BmrFI | CCNGG | 3 cut(s) | 317, 318, 514 |
| BmrI | ACTGGG | 1 cut(s) | 1682 |
| BmsI | GCATC | 4 cut(s) | 623, 1546, 1806, 1828 |
| BmtI | GCTAGC | 1 cut(s) | 1533 |
| BmuI | ACTGGG | 1 cut(s) | 1682 |
| BpiI | GAAGAC | 3 cut(s) | 264, 543, 2081 |
| BpmI | CTGGAG | 1 cut(s) | 1483 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1809 |
| BpuMI | CCSGG | 2 cut(s) | 317, 318 |
| BsaAI | YACGTR | 1 cut(s) | 1490 |
| BsaBI | GATNNNNATC | 1 cut(s) | 1407 |
| BsaI | GGTCTC | 1 cut(s) | 1116 |
| BsaJI | CCNNGG | 6 cut(s) | 316, 513, 1067, 1331, 1449, 2083 |
| BsaWI | WCCGGW | 1 cut(s) | 2133 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 290, 316, 692, 1121 |
| Bse1I | ACTGG | 1 cut(s) | 1688 |
| Bse3DI | GCAATG | 1 cut(s) | 139 |
| Bse8I | GATNNNNATC | 1 cut(s) | 1407 |
| BseAI | TCCGGA | 1 cut(s) | 2133 |
| BseBI | CCWGG | 1 cut(s) | 514 |
| BseDI | CCNNGG | 6 cut(s) | 316, 513, 1067, 1331, 1449, 2083 |
| BseGI | GGATG | 9 cut(s) | 189, 638, 722, 1021, 1078, 1347, 1405, 1683, 1974 |
| BseJI | GATNNNNATC | 1 cut(s) | 1407 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 290, 316, 692, 1121 |
| BseMI | GCAATG | 1 cut(s) | 139 |
| BseMII | CTCAG | 1 cut(s) | 281 |
| BseNI | ACTGG | 1 cut(s) | 1688 |
| BseRI | GAGGAG | 4 cut(s) | 384, 1337, 1669, 1706 |
| BseXI | GCAGC | 4 cut(s) | 27, 381, 1159, 1860 |
| BsgI | GTGCAG | 1 cut(s) | 380 |
| BshFI | GGCC | 2 cut(s) | 112, 1098 |
| BshNI | GGYRCC | 2 cut(s) | 137, 1930 |
| BsiHKAI | GWGCWC | 2 cut(s) | 858, 1349 |
| BsiHKCI | CYCGRG | 1 cut(s) | 316 |
| BsiSI | CCGG | 2 cut(s) | 317, 2134 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 290, 316, 692, 1121 |
| BsmAI | GTCTC | 3 cut(s) | 203, 487, 1116 |
| BsmI | GAATGC | 2 cut(s) | 1427, 1480 |
| BsnI | GGCC | 2 cut(s) | 112, 1098 |
| Bso31I | GGTCTC | 1 cut(s) | 1116 |
| BsoBI | CYCGRG | 1 cut(s) | 316 |
| Bsp1286I | GDGCHC | 4 cut(s) | 323, 858, 1331, 1349 |
| Bsp13I | TCCGGA | 1 cut(s) | 2133 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1809 |
| BspACI | CCGC | 5 cut(s) | 61, 636, 1467, 2018, 2046 |
| BspANI | GGCC | 2 cut(s) | 112, 1098 |
| BspCNI | CTCAG | 1 cut(s) | 280 |
| BspEI | TCCGGA | 1 cut(s) | 2133 |
| BspHI | TCATGA | 1 cut(s) | 2164 |
| BspLI | GGNNCC | 5 cut(s) | 139, 740, 1158, 1260, 1932 |
| BspMAI | CTGCAG | 2 cut(s) | 1132, 1525 |
| BspOI | GCTAGC | 1 cut(s) | 1533 |
| BspPI | GGATC | 9 cut(s) | 1151, 1164, 1217, 1253, 1266, 1439, 1784, 1983, 2169 |
| BspT107I | GGYRCC | 2 cut(s) | 137, 1930 |
| BspTNI | GGTCTC | 1 cut(s) | 1116 |
| BsrBI | CCGCTC | 1 cut(s) | 1467 |
| BsrDI | GCAATG | 1 cut(s) | 139 |
| BsrI | ACTGG | 1 cut(s) | 1688 |
| BssECI | CCNNGG | 6 cut(s) | 316, 513, 1067, 1331, 1449, 2083 |
| BssSI | CACGAG | 2 cut(s) | 857, 1608 |
| BssT1I | CCWWGG | 4 cut(s) | 1067, 1331, 1449, 2083 |
| Bst2BI | CACGAG | 2 cut(s) | 857, 1608 |
| Bst2UI | CCWGG | 1 cut(s) | 514 |
| Bst4CI | ACNGT | 2 cut(s) | 401, 1138 |
| Bst6I | CTCTTC | 5 cut(s) | 904, 910, 1314, 1763, 2097 |
| BstBAI | YACGTR | 1 cut(s) | 1490 |
| BstC8I | GCNNGC | 3 cut(s) | 638, 1267, 1531 |
| BstDEI | CTNAG | 3 cut(s) | 267, 541, 1809 |
| BstF5I | GGATG | 9 cut(s) | 189, 638, 722, 1021, 1078, 1347, 1405, 1683, 1974 |
| BstMAI | GTCTC | 3 cut(s) | 203, 487, 1116 |
| BstNI | CCWGG | 1 cut(s) | 514 |
| BstNSI | RCATGY | 2 cut(s) | 1214, 1362 |
| BstSCI | CCNGG | 3 cut(s) | 315, 316, 512 |
| BstSFI | CTRYAG | 3 cut(s) | 441, 1128, 1521 |
| BstV1I | GCAGC | 4 cut(s) | 27, 381, 1159, 1860 |
| BstV2I | GAAGAC | 3 cut(s) | 264, 543, 2081 |
| BstX2I | RGATCY | 4 cut(s) | 1156, 1258, 1444, 2140 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1338 |
| BstYI | RGATCY | 4 cut(s) | 1156, 1258, 1444, 2140 |
| BsuI | GTATCC | 1 cut(s) | 1740 |
| BsuRI | GGCC | 2 cut(s) | 112, 1098 |
| BtsCI | GGATG | 9 cut(s) | 189, 638, 722, 1021, 1078, 1347, 1405, 1683, 1974 |
| BtsI | GCAGTG | 2 cut(s) | 582, 1518 |
| BtsIMutI | CAGTG | 4 cut(s) | 582, 697, 1518, 2116 |
| Cac8I | GCNNGC | 3 cut(s) | 638, 1267, 1531 |
| CciI | TCATGA | 1 cut(s) | 2164 |
| Cfr9I | CCCGGG | 1 cut(s) | 316 |
| CseI | GACGC | 1 cut(s) | 2188 |
| Csp6I | GTAC | 4 cut(s) | 231, 455, 1181, 2062 |
| CviQI | GTAC | 4 cut(s) | 231, 455, 1181, 2062 |
| DdeI | CTNAG | 3 cut(s) | 267, 541, 1809 |
| DraI | TTTAAA | 1 cut(s) | 2032 |
| EaeI | YGGCCR | 2 cut(s) | 110, 1096 |
| Eam1104I | CTCTTC | 5 cut(s) | 904, 910, 1314, 1763, 2097 |
| EarI | CTCTTC | 5 cut(s) | 904, 910, 1314, 1763, 2097 |
| Ecl136II | GAGCTC | 1 cut(s) | 1347 |
| Eco130I | CCWWGG | 4 cut(s) | 1067, 1331, 1449, 2083 |
| Eco24I | GRGCYC | 3 cut(s) | 323, 1331, 1349 |
| Eco31I | GGTCTC | 1 cut(s) | 1116 |
| Eco53kI | GAGCTC | 1 cut(s) | 1347 |
| Eco72I | CACGTG | 1 cut(s) | 1490 |
| Eco88I | CYCGRG | 1 cut(s) | 316 |
| EcoICRI | GAGCTC | 1 cut(s) | 1347 |
| EcoRI | GAATTC | 1 cut(s) | 2129 |
| EcoRII | CCWGG | 1 cut(s) | 512 |
| EcoT14I | CCWWGG | 4 cut(s) | 1067, 1331, 1449, 2083 |
| EcoT22I | ATGCAT | 1 cut(s) | 1821 |
| EcoT38I | GRGCYC | 3 cut(s) | 323, 1331, 1349 |
| ErhI | CCWWGG | 4 cut(s) | 1067, 1331, 1449, 2083 |
| FauI | CCCGC | 2 cut(s) | 629, 1460 |
| Fnu4HI | GCNGC | 5 cut(s) | 41, 395, 1148, 1874, 2047 |
| FokI | GGATG | 9 cut(s) | 176, 645, 709, 1028, 1085, 1354, 1412, 1670, 1981 |
| FriOI | GRGCYC | 3 cut(s) | 323, 1331, 1349 |
| Fsp4HI | GCNGC | 5 cut(s) | 41, 395, 1148, 1874, 2047 |
| FspBI | CTAG | 3 cut(s) | 234, 1350, 1530 |
| GluI | GCNGC | 5 cut(s) | 41, 395, 1148, 1874, 2047 |
| GsuI | CTGGAG | 1 cut(s) | 1483 |
| HaeIII | GGCC | 2 cut(s) | 112, 1098 |
| HapII | CCGG | 2 cut(s) | 317, 2134 |
| HgaI | GACGC | 1 cut(s) | 2188 |
| HindIII | AAGCTT | 1 cut(s) | 791 |
| HinfI | GANTC | 5 cut(s) | 149, 271, 1063, 1627, 2071 |
| HpaII | CCGG | 2 cut(s) | 317, 2134 |
| HphI | GGTGA | 3 cut(s) | 305, 848, 1432 |
| Hpy188I | TCNGA | 7 cut(s) | 96, 148, 270, 1222, 1315, 1777, 2145 |
| HpyAV | CCTTC | 5 cut(s) | 752, 857, 886, 1018, 1251 |
| HpyCH4III | ACNGT | 2 cut(s) | 401, 1138 |
| HpyCH4IV | ACGT | 2 cut(s) | 457, 1489 |
| HpyF3I | CTNAG | 3 cut(s) | 267, 541, 1809 |
| HpySE526I | ACGT | 2 cut(s) | 457, 1489 |
| Kpn2I | TCCGGA | 1 cut(s) | 2133 |
| LmnI | GCTCC | 4 cut(s) | 472, 738, 1464, 1867 |
| Lsp1109I | GCAGC | 4 cut(s) | 27, 381, 1159, 1860 |
| LweI | GCATC | 4 cut(s) | 623, 1546, 1806, 1828 |
| MaeI | CTAG | 3 cut(s) | 234, 1350, 1530 |
| MaeII | ACGT | 2 cut(s) | 457, 1489 |
| MaeIII | GTNAC | 5 cut(s) | 241, 1132, 1483, 1506, 1670 |
| MbiI | CCGCTC | 1 cut(s) | 1467 |
| MfeI | CAATTG | 3 cut(s) | 1058, 1151, 2011 |
| MflI | RGATCY | 4 cut(s) | 1156, 1258, 1444, 2140 |
| MhlI | GDGCHC | 4 cut(s) | 323, 858, 1331, 1349 |
| MlsI | TGGCCA | 2 cut(s) | 112, 1098 |
| MluNI | TGGCCA | 2 cut(s) | 112, 1098 |
| MlyI | GAGTC | 1 cut(s) | 1072 |
| MmeI | TCCRAC | 4 cut(s) | 30, 991, 1250, 1901 |
| Mox20I | TGGCCA | 2 cut(s) | 112, 1098 |
| Mph1103I | ATGCAT | 1 cut(s) | 1821 |
| MroI | TCCGGA | 1 cut(s) | 2133 |
| MroXI | GAANNNNTTC | 3 cut(s) | 126, 300, 1427 |
| MscI | TGGCCA | 2 cut(s) | 112, 1098 |
| MslI | CAYNNNNRTG | 1 cut(s) | 975 |
| Msp20I | TGGCCA | 2 cut(s) | 112, 1098 |
| MspA1I | CMGCKG | 1 cut(s) | 2175 |
| MspI | CCGG | 2 cut(s) | 317, 2134 |
| MspR9I | CCNGG | 3 cut(s) | 317, 318, 514 |
| MunI | CAATTG | 3 cut(s) | 1058, 1151, 2011 |
| Mva1269I | GAATGC | 2 cut(s) | 1427, 1480 |
| MvaI | CCWGG | 1 cut(s) | 514 |
| NciI | CCSGG | 2 cut(s) | 317, 318 |
| NheI | GCTAGC | 1 cut(s) | 1529 |
| NlaIV | GGNNCC | 5 cut(s) | 139, 740, 1158, 1260, 1932 |
| NmuCI | GTSAC | 2 cut(s) | 1483, 1670 |
| NsiI | ATGCAT | 1 cut(s) | 1821 |
| NspI | RCATGY | 2 cut(s) | 1214, 1362 |
| PagI | TCATGA | 1 cut(s) | 2164 |
| PctI | GAATGC | 2 cut(s) | 1427, 1480 |
| PdmI | GAANNNNTTC | 3 cut(s) | 126, 300, 1427 |
| PfeI | GAWTC | 4 cut(s) | 149, 271, 1627, 2071 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 692 |
| PkrI | GCNGC | 5 cut(s) | 42, 396, 1149, 1875, 2048 |
| PleI | GAGTC | 1 cut(s) | 1071 |
| PmaCI | CACGTG | 1 cut(s) | 1490 |
| PmlI | CACGTG | 1 cut(s) | 1490 |
| PpsI | GAGTC | 1 cut(s) | 1071 |
| Ppu21I | YACGTR | 1 cut(s) | 1490 |
| PshBI | ATTAAT | 1 cut(s) | 1394 |
| Psp124BI | GAGCTC | 1 cut(s) | 1349 |
| Psp6I | CCWGG | 1 cut(s) | 512 |
| PspCI | CACGTG | 1 cut(s) | 1490 |
| PspGI | CCWGG | 1 cut(s) | 512 |
| PspN4I | GGNNCC | 5 cut(s) | 139, 740, 1158, 1260, 1932 |
| PstI | CTGCAG | 2 cut(s) | 1132, 1525 |
| PsuI | RGATCY | 4 cut(s) | 1156, 1258, 1444, 2140 |
| PvuII | CAGCTG | 1 cut(s) | 2175 |
| RsaI | GTAC | 4 cut(s) | 232, 456, 1182, 2063 |
| RsaNI | GTAC | 4 cut(s) | 231, 455, 1181, 2062 |
| RseI | CAYNNNNRTG | 1 cut(s) | 975 |
| SacI | GAGCTC | 1 cut(s) | 1349 |
| SatI | GCNGC | 5 cut(s) | 41, 395, 1148, 1874, 2047 |
| SchI | GAGTC | 1 cut(s) | 1072 |
| ScrFI | CCNGG | 3 cut(s) | 317, 318, 514 |
| SduI | GDGCHC | 4 cut(s) | 323, 858, 1331, 1349 |
| SfaNI | GCATC | 4 cut(s) | 623, 1546, 1806, 1828 |
| SfcI | CTRYAG | 3 cut(s) | 441, 1128, 1521 |
| SmaI | CCCGGG | 1 cut(s) | 318 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 975 |
| SsiI | CCGC | 5 cut(s) | 61, 636, 1467, 2018, 2046 |
| SspI | AATATT | 2 cut(s) | 530, 787 |
| SspMI | CTAG | 3 cut(s) | 234, 1350, 1530 |
| SstI | GAGCTC | 1 cut(s) | 1349 |
| StyD4I | CCNGG | 3 cut(s) | 315, 316, 512 |
| StyI | CCWWGG | 4 cut(s) | 1067, 1331, 1449, 2083 |
| TaaI | ACNGT | 2 cut(s) | 401, 1138 |
| TaiI | ACGT | 2 cut(s) | 460, 1492 |
| TaqI | TCGA | 6 cut(s) | 169, 873, 1080, 1986, 2092, 2148 |
| TatI | WGTACW | 1 cut(s) | 2061 |
| TauI | GCSGC | 1 cut(s) | 2049 |
| TfiI | GAWTC | 4 cut(s) | 149, 271, 1627, 2071 |
| TscAI | CASTG | 4 cut(s) | 582, 697, 1525, 2116 |
| TseFI | GTSAC | 2 cut(s) | 1483, 1670 |
| TseI | GCWGC | 4 cut(s) | 40, 394, 1147, 1873 |
| Tsp45I | GTSAC | 2 cut(s) | 1483, 1670 |
| TspGWI | ACGGA | 2 cut(s) | 269, 1355 |
| TspMI | CCCGGG | 1 cut(s) | 316 |
| TspRI | CASTG | 4 cut(s) | 582, 697, 1525, 2116 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 692 |
| VspI | ATTAAT | 1 cut(s) | 1394 |
| XapI | RAATTY | 4 cut(s) | 24, 617, 624, 2129 |
| XbaI | TCTAGA | 1 cut(s) | 1349 |
| XceI | RCATGY | 2 cut(s) | 1214, 1362 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 510 |
| XmaI | CCCGGG | 1 cut(s) | 316 |
| XmnI | GAANNNNTTC | 3 cut(s) | 126, 300, 1427 |
| XspI | CTAG | 3 cut(s) | 234, 1350, 1530 |
| Zsp2I | ATGCAT | 1 cut(s) | 1821 |