Rroxscaffold_2G00113790

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0005898
Physical Location & Seq
Reverse (-)
39515866 .. 39522710
6845 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00113790.1

Sequence Viewer

Length: 348 bp
ATGGTTGCATACGACCCAAAAAGAAGCTCCAAAAATGCTGCTGAAAGGAACAAAAAGGAAGATGACAGGCAGAAAGCCGGAAAGCTGGACAGATTGGATTGCGGGATATTTATTATGTACTACATGAATCAACTTTCCCAAGGTCTTCGAGTTGAAGAAGAGATCAGTGAATGCAGGATGTGGGAATTCCGGAAAGATCTGATTGAGCGTTTTGTGGATCATGGAAACAGCTGGATGCAGAACTCAACCACACAAAGTCTGTATACCATTTTAGGGAGATTTCTGAGTTGGGAACCAGCCTATGAATCAAGCCTTTCCAAGAATAACCATATTAATAAGGCTCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

115

Amino Acids

13.59

Weight (kDa)

7.76

Isoelectric Point (pI)

65.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 263
AccIII TCCGGA 1 cut(s) 189
AciI CCGC 1 cut(s) 102
AclWI GGATC 1 cut(s) 225
AcsI RAATTY 1 cut(s) 185
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 273
AgsI TTSAA 1 cut(s) 155
AluBI AGCT 3 cut(s) 27, 85, 231
AluI AGCT 3 cut(s) 27, 85, 231
AlwI GGATC 1 cut(s) 225
Aor13HI TCCGGA 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 185
AseI ATTAAT 1 cut(s) 333
BbsI GAAGAC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 25
BglII AGATCT 1 cut(s) 196
BisI GCNGC 1 cut(s) 39
BlsI GCNGC 1 cut(s) 40
BmiI GGNNCC 2 cut(s) 294, 342
BmsI GCATC 1 cut(s) 225
BpiI GAAGAC 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 139
BsaWI WCCGGW 1 cut(s) 189
Bsc4I CCNNNNNNNGG 1 cut(s) 273
BseAI TCCGGA 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 139
BseGI GGATG 2 cut(s) 183, 240
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMII CTCAG 1 cut(s) 275
BseXI GCAGC 1 cut(s) 25
BsiSI CCGG 2 cut(s) 78, 190
BslI CCNNNNNNNGG 1 cut(s) 273
BsmI GAATGC 1 cut(s) 176
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 3 cut(s) 162, 196, 217
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 276
BspEI TCCGGA 1 cut(s) 189
BspLI GGNNCC 2 cut(s) 294, 342
BspPI GGATC 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 3 cut(s) 162, 196, 217
BssNAI GTATAC 1 cut(s) 264
BssT1I CCWWGG 1 cut(s) 139
Bst1107I GTATAC 1 cut(s) 264
Bst6I CTCTTC 1 cut(s) 153
BstDEI CTNAG 1 cut(s) 284
BstF5I GGATG 2 cut(s) 183, 240
BstKTI GATC 3 cut(s) 165, 199, 220
BstMBI GATC 3 cut(s) 162, 196, 217
BstV1I GCAGC 1 cut(s) 25
BstV2I GAAGAC 1 cut(s) 137
BstX2I RGATCY 1 cut(s) 196
BstYI RGATCY 1 cut(s) 196
BstZ17I GTATAC 1 cut(s) 264
BtsCI GGATG 2 cut(s) 183, 240
BtsIMutI CAGTG 1 cut(s) 172
Csp6I GTAC 1 cut(s) 118
CviAII CATG 2 cut(s) 124, 221
CviJI RGCY 7 cut(s) 27, 77, 85, 231, 299, 312, 341
CviKI_1 RGCY 7 cut(s) 27, 77, 85, 231, 299, 312, 341
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 1 cut(s) 284
DpnI GATC 3 cut(s) 164, 198, 219
DpnII GATC 3 cut(s) 162, 196, 217
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
Eco130I CCWWGG 1 cut(s) 139
EcoRI GAATTC 1 cut(s) 185
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 127, 224
FaiI YATR 8 cut(s) 10, 116, 125, 222, 264, 303, 330, 346
FatI CATG 2 cut(s) 123, 220
FauI CCCGC 1 cut(s) 95
FblI GTMKAC 1 cut(s) 263
Fnu4HI GCNGC 1 cut(s) 39
FokI GGATG 2 cut(s) 190, 247
Fsp4HI GCNGC 1 cut(s) 39
GluI GCNGC 1 cut(s) 39
HapII CCGG 2 cut(s) 78, 190
Hin1II CATG 2 cut(s) 127, 224
HinfI GANTC 2 cut(s) 127, 305
HpaII CCGG 2 cut(s) 78, 190
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 2 cut(s) 201, 285
Hpy188III TCNNGA 1 cut(s) 190
Hpy8I GTNNAC 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 8, 174, 238
HpyF3I CTNAG 1 cut(s) 284
Hsp92II CATG 2 cut(s) 127, 224
Kpn2I TCCGGA 1 cut(s) 189
Kzo9I GATC 3 cut(s) 162, 196, 217
LmnI GCTCC 2 cut(s) 32, 346
LpnPI CCDG 7 cut(s) 52, 71, 91, 160, 203, 217, 309
Lsp1109I GCAGC 1 cut(s) 25
LweI GCATC 1 cut(s) 225
MalI GATC 3 cut(s) 164, 198, 219
MboI GATC 3 cut(s) 162, 196, 217
MboII GAAGA 4 cut(s) 71, 137, 167, 170
MflI RGATCY 1 cut(s) 196
MluCI AATT 1 cut(s) 185
MroI TCCGGA 1 cut(s) 189
MseI TTAA 1 cut(s) 333
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 2 cut(s) 78, 190
Mva1269I GAATGC 1 cut(s) 176
NdeII GATC 3 cut(s) 162, 196, 217
NlaIII CATG 2 cut(s) 127, 224
NlaIV GGNNCC 2 cut(s) 294, 342
PctI GAATGC 1 cut(s) 176
PfeI GAWTC 2 cut(s) 127, 305
PkrI GCNGC 1 cut(s) 40
PshBI ATTAAT 1 cut(s) 333
PspN4I GGNNCC 2 cut(s) 294, 342
PsuI RGATCY 1 cut(s) 196
PvuII CAGCTG 1 cut(s) 231
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SaqAI TTAA 1 cut(s) 333
SatI GCNGC 1 cut(s) 39
Sau3AI GATC 3 cut(s) 162, 196, 217
SetI ASST 4 cut(s) 29, 87, 145, 233
SfaNI GCATC 1 cut(s) 225
Sse9I AATT 1 cut(s) 185
SsiI CCGC 1 cut(s) 102
StyI CCWWGG 1 cut(s) 139
TaqI TCGA 1 cut(s) 148
TasI AATT 1 cut(s) 185
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 2 cut(s) 127, 305
Tru1I TTAA 1 cut(s) 333
Tru9I TTAA 1 cut(s) 333
TscAI CASTG 1 cut(s) 172
TseI GCWGC 1 cut(s) 38
TspDTI ATGAA 2 cut(s) 140, 318
TspRI CASTG 1 cut(s) 172
VspI ATTAAT 1 cut(s) 333
XapI RAATTY 1 cut(s) 185
XmiI GTMKAC 1 cut(s) 263
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.