Rh6BG145600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0005898
Physical Location & Seq
Forward (+)
23302633 .. 23307023
4391 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG145600.1

Sequence Viewer

Length: 1884 bp
ATGGCAGAGGCAGAGCTACTTCCTGCTACCATCAATGGCAGAGCTACTTCCTGCACCATCACCACCACAACCTCCTCCTATCCTCTGTTTTTTCTCTGTTCCTCATTTATTTCTCTCCGACCCTATTTTTATTATATATACATTCCTATACAAACCCTACCTCTACTCAATTCTGCTCAAACTCGGCATTGTGAAAACCCTGCTTCATCCTTTGAGTCTAACTTTTCCTTGAAGAAACTTAAAGGTCCAGTGATCATCCGCCAATTTAAGATTGTAAAATGGCACCATATTGTCAAATTCGTTGTAGTGTGCTGCCAATCAGCAGTGGGAGAATTCCTAAACAAATCTTTGAAAGCCAAGAGCAAAGTTGAAATTAAGGGATGCGCGCTTCTCATTCCACTTTGGTTGTGTGAGAAAACAAATATTACACAACCAATCAGTGGGAGGGAGATCATTGAGGGCAACACACCATCCCTAATCAGATGGAGTCTTCCAGAACTGAACATGAAAATGCAAGAAATAACCATTTGCGAAATTGAGCGTTTGTTCGAGGTGCAAAATGGGATCGAAGTAGAAATAAAACCTGAACATGAAAATCATGAAGGAGAAGAGGAAGAGCTAAAGAAGAAAGACACGAAACAAAAGGGAAGAGAATTATACCAACCGTTAAAAAAAGAAATTGTGGAAAGAAGAAAGGTACAGAAGAACGACTATGAATTAAACGTGAAGAACAACTTCAAAGATAAACTTAAAGCAGAAGTTGATGGAGACATGGAGTTGATTGAGAAAGATCAGCTAGATCCTCAAATCCCCTGCACTGCAATTCAATTGAGTCCAGGGGATGACAATAAGGTGCCACAAGTTGAGCATCAAATGAGGCTTCCTATGGAAGGAACTGGAGTGAAAGTTAGAAAGCAGCAACTGGATCCAGATTTTGTGTGCAATGTAGTGCCTAAAAGGAGAAAGGCAAAAGAGCAACATGCTCCATCTGATCCAATTCTTACAGTACCTACGAGGGCAATTCAGGATTCTGCTGGCAAGAGAGATGAACGGATAATAATTATCGTTGATGATTCTGTTTCAGAAGAGGAGAAGAGCACAAGGAAAGTGAAGAGACCAAGGAAAGAATGGTCCCCTTTGGAAAGATGTGAGGTATTCAAGTTATTGGATGATGAATATCAACAAAAGGTGAAAGCATTCTGGAGTATGACAAATCCCAAAGAACTATTTTGGAGTGGGAAAAATGCAAGCGTTGCACGTGAAGATGTCAAAAAGTTGATACAAAACACTGCAGTAGCGAGCAACGTCATTGATGCATTCATGGAGCTATTGGAACAAAAACAGCACCAAAGTAGTGTAAAACAATCAACATACATATCAACTCTGTGCTGGAACTATGTACGAATGAAAGATGCACGAAAGAAAGGAAAGAAAGATCAAGTGCAAGATGAAGTTCATGATGAAGTGGGGTTGAATCAATTGGTTTTTGATCCGCTATTGGGTAGTATGGCACAAAGCGACTATATATTCTTCCCAGTAATCTCAAAGTTCCACTACACTCTCCTCGTCCTAAACAAAAATGAGAAAAAGTGGACACATTACAACCCCTTAAGGAAGAGATCAGAACTGCATATTGATCCATGCTATGAGGTTGCTAAGCAAATGCATCAATTGATACAAGAATGGTTCCATATAACCCAAAAAGAAGCTCCAAGAGCACTGCTAAATGGAACAAAAAGGAAGAAGCTGGGGAAAAGGGAAGGCTGGATGGAAGTTCCTCTTAGTGAAGATGAAAAAAGAACTCTAACTTGGATGATGGATAACAATATCGACTTCAAAATAGAGAACGATCGTATAAGTCCGCAACAGGACTTTAAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

627

Amino Acids

72.85

Weight (kDa)

8.69

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 433 - 558 3.7e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 282, 853
AccB7I CCANNNNNTGG 1 cut(s) 440
AccII CGCG 1 cut(s) 386
AciI CCGC 3 cut(s) 259, 1493, 1862
AclWI GGATC 7 cut(s) 572, 794, 920, 933, 986, 1484, 1631
AcsI RAATTY 2 cut(s) 296, 332
AcvI CACGTG 1 cut(s) 1259
AfaI GTAC 3 cut(s) 699, 1008, 1401
AfiI CCNNNNNNNGG 3 cut(s) 440, 890, 1499
AflII CTTAAG 1 cut(s) 1609
AgsI TTSAA 8 cut(s) 232, 352, 371, 739, 827, 1159, 1474, 1837
AjnI CCWGG 1 cut(s) 835
AjuI GAANNNNNNNTTGG 2 cut(s) 1792, 1824
AluBI AGCT 7 cut(s) 16, 44, 619, 796, 1327, 1709, 1747
AluI AGCT 7 cut(s) 16, 44, 619, 796, 1327, 1709, 1747
Alw21I GWGCWC 2 cut(s) 1100, 1720
Alw26I GTCTC 2 cut(s) 762, 1108
AlwI GGATC 7 cut(s) 572, 794, 920, 933, 986, 1484, 1631
AlwNI CAGNNNCTG 1 cut(s) 922
ApeKI GCWGC 2 cut(s) 312, 916
ApoI RAATTY 2 cut(s) 296, 332
Asp700I GAANNNNTTC 2 cut(s) 734, 1196
AspLEI GCGC 2 cut(s) 386, 388
AspS9I GGNCC 2 cut(s) 245, 1131
AsuHPI GGTGA 2 cut(s) 52, 1201
AvaII GGWCC 2 cut(s) 245, 1131
BamHI GGATCC 1 cut(s) 925
BanI GGYRCC 2 cut(s) 282, 853
BbrPI CACGTG 1 cut(s) 1259
BbsI GAAGAC 1 cut(s) 482
Bbv12I GWGCWC 2 cut(s) 1100, 1720
BbvI GCAGC 2 cut(s) 299, 928
BccI CCATC 8 cut(s) 38, 65, 477, 478, 758, 994, 1762, 1810
BciT130I CCWGG 1 cut(s) 837
BclI TGATCA 1 cut(s) 252
BcoDI GTCTC 2 cut(s) 762, 1108
BfaI CTAG 1 cut(s) 797
BfmI CTRYAG 1 cut(s) 1290
BfrI CTTAAG 1 cut(s) 1609
BisI GCNGC 2 cut(s) 313, 917
BlpI GCTNAGC 1 cut(s) 1656
BlsI GCNGC 2 cut(s) 314, 918
Bme1390I CCNGG 1 cut(s) 837
Bme18I GGWCC 2 cut(s) 245, 1131
BmgT120I GGNCC 2 cut(s) 245, 1131
BmiI GGNNCC 5 cut(s) 284, 855, 927, 1133, 1688
BmrFI CCNGG 1 cut(s) 837
BmrI ACTGGG 1 cut(s) 1529
BmsI GCATC 5 cut(s) 371, 877, 1303, 1402, 1675
BmuI ACTGGG 1 cut(s) 1529
BpiI GAAGAC 1 cut(s) 482
BpmI CTGGAG 2 cut(s) 918, 1222
Bpu1102I GCTNAGC 1 cut(s) 1656
BsaAI YACGTR 1 cut(s) 1259
BsaBI GATNNNNATC 1 cut(s) 1176
BsaI GGTCTC 1 cut(s) 1108
BsaJI CCNNGG 2 cut(s) 836, 1118
BsaXI ACNNNNNCTCC 2 cut(s) 891, 921
Bsc4I CCNNNNNNNGG 3 cut(s) 440, 890, 1499
Bse1I ACTGG 4 cut(s) 248, 901, 927, 1535
Bse3DI GCAATG 1 cut(s) 949
Bse8I GATNNNNATC 1 cut(s) 1176
BseBI CCWGG 1 cut(s) 837
BseDI CCNNGG 2 cut(s) 836, 1118
BseGI GGATG 8 cut(s) 206, 255, 386, 470, 847, 1174, 1773, 1818
BseJI GATNNNNATC 1 cut(s) 1176
BseLI CCNNNNNNNGG 3 cut(s) 440, 890, 1499
BseMI GCAATG 1 cut(s) 949
BseNI ACTGG 4 cut(s) 248, 901, 927, 1535
BsePI GCGCGC 1 cut(s) 384
BseRI GAGGAG 3 cut(s) 64, 1103, 1553
BseXI GCAGC 2 cut(s) 299, 928
BseYI CCCAGC 1 cut(s) 1747
BsgI GTGCAG 2 cut(s) 37, 799
Bsh1236I CGCG 1 cut(s) 386
Bsh1285I CGRYCG 1 cut(s) 1852
BshNI GGYRCC 2 cut(s) 282, 853
BsiEI CGRYCG 1 cut(s) 1852
BsiHKAI GWGCWC 2 cut(s) 1100, 1720
BslFI GGGAC 1 cut(s) 1117
BslI CCNNNNNNNGG 3 cut(s) 440, 890, 1499
BsmAI GTCTC 2 cut(s) 762, 1108
BsmFI GGGAC 1 cut(s) 1117
BsmI GAATGC 2 cut(s) 1196, 1316
Bso31I GGTCTC 1 cut(s) 1108
Bsp1286I GDGCHC 2 cut(s) 1100, 1720
Bsp1720I GCTNAGC 1 cut(s) 1656
BspACI CCGC 3 cut(s) 259, 1493, 1862
BspFNI CGCG 1 cut(s) 386
BspHI TCATGA 2 cut(s) 598, 1456
BspLI GGNNCC 5 cut(s) 284, 855, 927, 1133, 1688
BspMAI CTGCAG 1 cut(s) 1294
BspPI GGATC 7 cut(s) 572, 794, 920, 933, 986, 1484, 1631
BspQI GCTCTTC 2 cut(s) 609, 1088
BspT107I GGYRCC 2 cut(s) 282, 853
BspTI CTTAAG 1 cut(s) 1609
BspTNI GGTCTC 1 cut(s) 1108
BsrDI GCAATG 1 cut(s) 949
BsrI ACTGG 4 cut(s) 248, 901, 927, 1535
BssECI CCNNGG 2 cut(s) 836, 1118
BssHII GCGCGC 1 cut(s) 384
BssT1I CCWWGG 1 cut(s) 1118
Bst2UI CCWGG 1 cut(s) 837
Bst4CI ACNGT 2 cut(s) 666, 1006
Bst6I CTCTTC 7 cut(s) 603, 609, 643, 1080, 1088, 1106, 1610
BstAFI CTTAAG 1 cut(s) 1609
BstAPI GCANNNNNTGC 1 cut(s) 1253
BstBAI YACGTR 1 cut(s) 1259
BstC8I GCNNGC 4 cut(s) 386, 1036, 1249, 1300
BstDEI CTNAG 2 cut(s) 1656, 1781
BstENI CCTNNNNNAGG 1 cut(s) 888
BstF5I GGATG 8 cut(s) 206, 255, 386, 470, 847, 1174, 1773, 1818
BstFNI CGCG 1 cut(s) 386
BstHHI GCGC 2 cut(s) 386, 388
BstMAI GTCTC 2 cut(s) 762, 1108
BstMCI CGRYCG 1 cut(s) 1852
BstMWI GCNNNNNNNGC 2 cut(s) 1253, 1715
BstNI CCWGG 1 cut(s) 837
BstNSI RCATGY 1 cut(s) 983
BstSCI CCNGG 1 cut(s) 835
BstSFI CTRYAG 1 cut(s) 1290
BstUI CGCG 1 cut(s) 386
BstV1I GCAGC 2 cut(s) 299, 928
BstV2I GAAGAC 1 cut(s) 482
BstX2I RGATCY 2 cut(s) 799, 925
BstYI RGATCY 2 cut(s) 799, 925
BtsCI GGATG 8 cut(s) 206, 255, 386, 470, 847, 1174, 1773, 1818
BtsI GCAGTG 4 cut(s) 330, 816, 1287, 1718
BtsIMutI CAGTG 6 cut(s) 255, 330, 445, 816, 1287, 1718
Cac8I GCNNGC 4 cut(s) 386, 1036, 1249, 1300
CaiI CAGNNNCTG 1 cut(s) 922
CciI TCATGA 2 cut(s) 598, 1456
CfoI GCGC 2 cut(s) 386, 388
Cfr13I GGNCC 2 cut(s) 245, 1131
Csp6I GTAC 3 cut(s) 698, 1007, 1400
CspCI CAANNNNNGTGG 2 cut(s) 387, 422
CviAII CATG 8 cut(s) 505, 590, 599, 772, 980, 1321, 1457, 1641
CviQI GTAC 3 cut(s) 698, 1007, 1400
DdeI CTNAG 2 cut(s) 1656, 1781
DraI TTTAAA 1 cut(s) 1876
Eam1104I CTCTTC 7 cut(s) 603, 609, 643, 1080, 1088, 1106, 1610
EarI CTCTTC 7 cut(s) 603, 609, 643, 1080, 1088, 1106, 1610
EciI GGCGGA 1 cut(s) 248
Eco130I CCWWGG 1 cut(s) 1118
Eco31I GGTCTC 1 cut(s) 1108
Eco47I GGWCC 2 cut(s) 245, 1131
Eco72I CACGTG 1 cut(s) 1259
EcoNI CCTNNNNNAGG 1 cut(s) 888
EcoRI GAATTC 1 cut(s) 332
EcoRII CCWGG 1 cut(s) 835
EcoT14I CCWWGG 1 cut(s) 1118
EcoT22I ATGCAT 2 cut(s) 1318, 1668
ErhI CCWWGG 1 cut(s) 1118
FaeI CATG 8 cut(s) 508, 593, 602, 775, 983, 1324, 1460, 1644
FalI AAGNNNNNCTT 6 cut(s) 719, 751, 732, 764, 1764, 1796
FaqI GGGAC 1 cut(s) 1117
FatI CATG 8 cut(s) 504, 589, 598, 771, 979, 1320, 1456, 1640
FbaI TGATCA 1 cut(s) 252
Fnu4HI GCNGC 2 cut(s) 313, 917
FokI GGATG 8 cut(s) 193, 242, 393, 457, 854, 1181, 1780, 1825
Fsp4HI GCNGC 2 cut(s) 313, 917
FspBI CTAG 1 cut(s) 797
GlaI GCGC 2 cut(s) 385, 387
GluI GCNGC 2 cut(s) 313, 917
GsaI CCCAGC 1 cut(s) 1751
GsuI CTGGAG 2 cut(s) 918, 1222
HhaI GCGC 2 cut(s) 386, 388
Hin1II CATG 8 cut(s) 508, 593, 602, 775, 983, 1324, 1460, 1644
Hin6I GCGC 2 cut(s) 384, 386
HinP1I GCGC 2 cut(s) 384, 386
HinfI GANTC 6 cut(s) 215, 487, 832, 1028, 1073, 1474
HphI GGTGA 2 cut(s) 52, 1201
Hpy166II GTNNAC 1 cut(s) 1593
Hpy188I TCNGA 5 cut(s) 119, 482, 991, 1084, 1624
Hpy188III TCNNGA 6 cut(s) 494, 599, 929, 1025, 1201, 1457
Hpy8I GTNNAC 1 cut(s) 1593
HpyAV CCTTC 3 cut(s) 596, 884, 1754
HpyCH4III ACNGT 2 cut(s) 666, 1006
HpyCH4IV ACGT 3 cut(s) 723, 1258, 1305
HpyF10VI GCNNNNNNNGC 2 cut(s) 1253, 1715
HpyF3I CTNAG 2 cut(s) 1656, 1781
HpySE526I ACGT 3 cut(s) 723, 1258, 1305
Hsp92II CATG 8 cut(s) 508, 593, 602, 775, 983, 1324, 1460, 1644
HspAI GCGC 2 cut(s) 384, 386
Ksp22I TGATCA 1 cut(s) 252
LguI GCTCTTC 2 cut(s) 609, 1088
LmnI GCTCC 3 cut(s) 988, 1324, 1714
Lsp1109I GCAGC 2 cut(s) 299, 928
LweI GCATC 5 cut(s) 371, 877, 1303, 1402, 1675
MaeI CTAG 1 cut(s) 797
MaeII ACGT 3 cut(s) 723, 1258, 1305
MfeI CAATTG 3 cut(s) 827, 1478, 1670
MflI RGATCY 2 cut(s) 799, 925
MhlI GDGCHC 2 cut(s) 1100, 1720
MlyI GAGTC 3 cut(s) 224, 496, 841
MmeI TCCRAC 1 cut(s) 142
Mph1103I ATGCAT 2 cut(s) 1318, 1668
MroXI GAANNNNTTC 2 cut(s) 734, 1196
MseI TTAA 8 cut(s) 240, 267, 375, 668, 719, 750, 1610, 1875
MslI CAYNNNNRTG 1 cut(s) 509
MspCI CTTAAG 1 cut(s) 1609
MspR9I CCNGG 1 cut(s) 837
MunI CAATTG 3 cut(s) 827, 1478, 1670
Mva1269I GAATGC 2 cut(s) 1196, 1316
MvaI CCWGG 1 cut(s) 837
MvnI CGCG 1 cut(s) 386
MwoI GCNNNNNNNGC 2 cut(s) 1253, 1715
NlaIII CATG 8 cut(s) 508, 593, 602, 775, 983, 1324, 1460, 1644
NlaIV GGNNCC 5 cut(s) 284, 855, 927, 1133, 1688
NmeAIII GCCGAG 1 cut(s) 163
NsiI ATGCAT 2 cut(s) 1318, 1668
NspI RCATGY 1 cut(s) 983
PagI TCATGA 2 cut(s) 598, 1456
PauI GCGCGC 1 cut(s) 384
PciSI GCTCTTC 2 cut(s) 609, 1088
PctI GAATGC 2 cut(s) 1196, 1316
PdmI GAANNNNTTC 2 cut(s) 734, 1196
PfeI GAWTC 3 cut(s) 1028, 1073, 1474
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 2 cut(s) 314, 918
Ple19I CGATCG 1 cut(s) 1852
PleI GAGTC 3 cut(s) 223, 495, 840
PmaCI CACGTG 1 cut(s) 1259
PmlI CACGTG 1 cut(s) 1259
PpsI GAGTC 3 cut(s) 223, 495, 840
Ppu21I YACGTR 1 cut(s) 1259
Psp6I CCWGG 1 cut(s) 835
PspCI CACGTG 1 cut(s) 1259
PspFI CCCAGC 1 cut(s) 1747
PspGI CCWGG 1 cut(s) 835
PspN4I GGNNCC 5 cut(s) 284, 855, 927, 1133, 1688
PspPI GGNCC 2 cut(s) 245, 1131
PstI CTGCAG 1 cut(s) 1294
PstNI CAGNNNCTG 1 cut(s) 922
PsuI RGATCY 2 cut(s) 799, 925
PteI GCGCGC 1 cut(s) 384
PvuI CGATCG 1 cut(s) 1852
RsaI GTAC 3 cut(s) 699, 1008, 1401
RsaNI GTAC 3 cut(s) 698, 1007, 1400
RseI CAYNNNNRTG 1 cut(s) 509
SapI GCTCTTC 2 cut(s) 609, 1088
SaqAI TTAA 8 cut(s) 240, 267, 375, 668, 719, 750, 1610, 1875
SatI GCNGC 2 cut(s) 313, 917
Sau96I GGNCC 2 cut(s) 245, 1131
SchI GAGTC 3 cut(s) 224, 496, 841
ScrFI CCNGG 1 cut(s) 837
SduI GDGCHC 2 cut(s) 1100, 1720
SfaNI GCATC 5 cut(s) 371, 877, 1303, 1402, 1675
SfcI CTRYAG 1 cut(s) 1290
SinI GGWCC 2 cut(s) 245, 1131
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 1609
SmoI CTYRAG 1 cut(s) 1609
SsiI CCGC 3 cut(s) 259, 1493, 1862
SspI AATATT 1 cut(s) 424
SspMI CTAG 1 cut(s) 797
StyD4I CCNGG 1 cut(s) 835
StyI CCWWGG 1 cut(s) 1118
TaaI ACNGT 2 cut(s) 666, 1006
TaiI ACGT 3 cut(s) 726, 1261, 1308
TaqI TCGA 3 cut(s) 549, 567, 1830
TfiI GAWTC 3 cut(s) 1028, 1073, 1474
Tru1I TTAA 8 cut(s) 240, 267, 375, 668, 719, 750, 1610, 1875
Tru9I TTAA 8 cut(s) 240, 267, 375, 668, 719, 750, 1610, 1875
TscAI CASTG 6 cut(s) 255, 330, 445, 823, 1294, 1725
TseI GCWGC 2 cut(s) 312, 916
TspGWI ACGGA 1 cut(s) 1066
TspRI CASTG 6 cut(s) 255, 330, 445, 823, 1294, 1725
Van91I CCANNNNNTGG 1 cut(s) 440
Vha464I CTTAAG 1 cut(s) 1609
VpaK11BI GGWCC 2 cut(s) 245, 1131
XagI CCTNNNNNAGG 1 cut(s) 888
XapI RAATTY 2 cut(s) 296, 332
XceI RCATGY 1 cut(s) 983
XcmI CCANNNNNNNNNTGG 1 cut(s) 1125
XmnI GAANNNNTTC 2 cut(s) 734, 1196
XspI CTAG 1 cut(s) 797
Zsp2I ATGCAT 2 cut(s) 1318, 1668
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.