Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0005898

Physical Location & Seq

Genomic Coordinates Forward (+)

18416490 .. 18421189

Gene Structure 4700 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG142000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2310 bp

ATGGCGCCTTTGGTCCTTTTGATAACCAAGGCATTGAGTAAGCTCCTATTTTTGGCATTCGGCGCGTTTCCCTTTGTTTCAAAATTAACTCACAATGGCAGAGGCAGAGCTACTTCCTGCTACCATCAATGGCAGATGGCACCATCACCACCACAACCTCCTCCTATGCTCTATTGTAAAATGGCACCATATTGTCAAATTCGTTGTAGTGTGCTGCCAATGTTGGAAACAATGCAGCTACTTGAGGAAAGCCACTTGGAGTTGCTTCAGAAGACTCCATTTTGGCCATTGTTAGAAGCATTTCACAATGGCACCATTTCAGAATTACAATGCAAGGATTGTCGAACTCCCTTACTAAAGATCATCAAAACTTTTAACCCAGAGACCGCGACCTTTCACTTTGGTACTAGAGCCATATCTATAAACACAGAAGACATCTCTCAGATTCTTGGACTGCCACAACATGGTGACACAGTCCAATTCGGTCATCTGGTTTATCGTAGATCATACAAATCAGACTTTACTGAGAGACATTTTAAGGGAATAGACAGGGTGAGCCACAAACTGCTACATGGTCTACTATTAAAGTTACTGAATAGGAAAGAACAAACGGATATAGAAGATGTTGTACGTCTCACCCTAATGGAGTTGTTCATCACATTCCTGTTCACCCGATCACATCTTCAATTGGTTCTAGTGAAGTATTGTGATGAATTTGACAAACTTTCAAGGTATTCATGGGCAGCAGCAGTGGGAGAATTCCTAAACAAATCTTTGAAAGCCAAGAGCAAAGTTGAAATTAAGGGATGCGCGCTTCTCATTCCACTTTGGTTGTGTGAGAAAACAAATATTACACAACCAATCAGTGGGAGGGAGATCATCGAGGGTAACACACCATCCCTAATCAGGTGGAGTCTTCCGGAACTGAACATCAAAATGCAAGAAATAACCATTTGCGAAATTGAGCGTTTGTTCGAGGTGCAAAATGGGATCGAAGTAGAAATAAAACCTGAACATGAAAATCATGAAGGAGAAGAGGAAGAGCTAAAGAAGAAAGACACGAAACAAAAGGGAAGAGAATTATACCAACCGTTACAAAAAGAAATAGTGGAAAGAAGAAAGGTACAGAAGAACGACTATGAATTAAACGTGAAGAACAACTTCAAAGATAAACTTAAAGCAGAAGTTGATGGAGACATGGAGTTGATTGAGAAAGATCAGCTAGATCCTCAAATCCCCTGCAATGCAATTCAATTGAGTCCAGGGGATGACAATAAGGTGCCACAAGTTGAGCATCAAATGAGGCTTCCTATGGAAGGAACTGGCGTGAAAGTTAGAAAGCAGCAACTGGATCCAGATTTTGTGTGCAATGTAGTGCCTAAAAGGAGAAAGGCAAAAGAGCAACATGCTCCATCTGATCCAATTCTTACAGTACCTACGAGGGCAATTCAGGATTCTGCTGGCAAGAGAGATGAACAGATAATAATTATCGTTGATGATTCTGTTTCAGAAGAGGAGAAGAGCACAAGGAAAGTGAAGAGACCAAGGAAAGAATGGTCCCCTTTGGAAAGATGTGAGGTATTCAAGTTATTGGATGATGAATATCAACACAAGGTGAAAGCATTCTGGAGTATGACAAATCCCAAAGAACTATTTTGGAGTGGGAAAAATGCAAGCGTTGCACGTGAAGATGTCAAAAAGTTGATACAAAACACTGCAGTAGCGAGCAACGTCATTGATGCATTCATGGAGCTATTGGAACAAAAACAGCACCAAAGTAGTGTAAAACAATCAACATACATATCAACTCTGTGCTGGAACTATGTACGAATGAAAGATGCACAAAAGAAAGGAAAGAAAGATCAAGTGCAAGATGAAATTCATGATGAAGTGGGGTTGAATCAATTGGTTTTTGATCCGCTATTGGGTAGTATGGCACAAAGCGACTATATATTCTTCCCAATAATATCAAAGTTCCACTACACTCTCCTCGTCCTAAACAAAAATGAGAAAAAGTGGACACATTACAACCCCTTAAGGAAGAGATCAGAACTGCATATTGATCCATGCTATGAGGTTGCCAAGCAAATGCATCAATTGATACAAGAATGGTTCCATATAACCCAAAAAGAAGCTCCAAGAGCACTGCTAAATGGAACAAAAAGGAAGAAGCTGGGGAAAAGGGAAGACTGGATGGAAGTTCCTCTTAGTGAAGATGAAAAAAGAACTCTAACTTGGATGATGGATAACAATATCGACTTCAAAATAGAGAACGATCGTATAAGTCCGCAACAGGACTTTAAATCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

769

Amino Acids

89.48

Weight (kDa)

8.29

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PMD	PF10536	118 - 310	1.8e-14	Plant mobile domain
Peptidase_C48	PF02902	575 - 700	5.2e-07	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005898)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09801 FvH4_2g09801 FvH4_2g09802 FvH4_2g10140 FvH4_2g10140 FvH4_2g10140
rosa_chinensis	RchiOBHm_Chr6g0266141 RchiOBHm_Chr6g0266151
rosa_laevigata	RLG00000014112 RLG00000014113
rosa_multiflora	Rmu_sc0004324.1_g000010 Rmu_sc0012594.1_g000003
rosa_roxburghii	Rroxscaffold_174G00435240 Rroxscaffold_174G00435320 Rroxscaffold_2G00113790 Rroxscaffold_7G00201870 Rroxscaffold_7G00201900
rosa_rugosa	Rorug06G0024300
rosa_samantha	Rh6AG144900 Rh6AG145000 Rh6BG145600 Rh6BG145700 Rh6CG142000 Rh6CG142100 Rh6DG130000 Rh6DG130100
rosa_wichuraiana	Rw6G012510 Rw6G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	5 cut(s)	4, 139, 184, 311, 1279
AccB7I	CCANNNNNTGG	2 cut(s)	464, 866
AccI	GTMKAC	1 cut(s)	577
AccII	CGCG	3 cut(s)	65, 389, 812
AccIII	TCCGGA	1 cut(s)	919
AciI	CCGC	3 cut(s)	387, 1919, 2288
AclWI	GGATC	7 cut(s)	998, 1220, 1346, 1359, 1412, 1910, 2057
AcoI	YGGCCR	1 cut(s)	284
AcsI	RAATTY	4 cut(s)	198, 713, 758, 1878
AcuI	CTGAAG	1 cut(s)	251
AcvI	CACGTG	1 cut(s)	1685
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	1615
AfaI	GTAC	5 cut(s)	406, 630, 1125, 1434, 1827
AfiI	CCNNNNNNNGG	6 cut(s)	52, 464, 866, 906, 1316, 1925
AflII	CTTAAG	1 cut(s)	2035
AjnI	CCWGG	1 cut(s)	1261
AjuI	GAANNNNNNNTTGG	2 cut(s)	2218, 2250
AluBI	AGCT	8 cut(s)	43, 110, 238, 1045, 1222, 1753, 2135, 2173
AluI	AGCT	8 cut(s)	43, 110, 238, 1045, 1222, 1753, 2135, 2173
Alw21I	GWGCWC	2 cut(s)	1526, 2146
Alw26I	GTCTC	5 cut(s)	377, 523, 638, 1188, 1534
AlwI	GGATC	7 cut(s)	998, 1220, 1346, 1359, 1412, 1910, 2057
AlwNI	CAGNNNCTG	1 cut(s)	1348
Aor13HI	TCCGGA	1 cut(s)	919
AoxI	GGCC	1 cut(s)	284
ApeKI	GCWGC	5 cut(s)	214, 235, 743, 746, 1342
ApoI	RAATTY	4 cut(s)	198, 713, 758, 1878
Asp700I	GAANNNNTTC	3 cut(s)	300, 1160, 1622
AspLEI	GCGC	4 cut(s)	7, 65, 812, 814
AspS9I	GGNCC	2 cut(s)	13, 1557
AsuHPI	GGTGA	6 cut(s)	138, 479, 565, 628, 661, 1627
AvaII	GGWCC	2 cut(s)	13, 1557
BalI	TGGCCA	1 cut(s)	286
BamHI	GGATCC	1 cut(s)	1351
BanI	GGYRCC	5 cut(s)	4, 139, 184, 311, 1279
BarI	GAAGNNNNNNTAC	2 cut(s)	612, 644
BbrPI	CACGTG	1 cut(s)	1685
BbsI	GAAGAC	4 cut(s)	278, 438, 908, 2193
Bbv12I	GWGCWC	2 cut(s)	1526, 2146
BbvI	GCAGC	5 cut(s)	201, 247, 755, 758, 1354
BccI	CCATC	8 cut(s)	130, 132, 151, 904, 1184, 1420, 2188, 2236
BciT130I	CCWGG	1 cut(s)	1263
BcoDI	GTCTC	5 cut(s)	377, 523, 638, 1188, 1534
BfaI	CTAG	3 cut(s)	408, 695, 1223
BfmI	CTRYAG	1 cut(s)	1716
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	2035
BisI	GCNGC	5 cut(s)	215, 236, 744, 747, 1343
BlsI	GCNGC	5 cut(s)	216, 237, 745, 748, 1344
Bme1390I	CCNGG	1 cut(s)	1263
Bme18I	GGWCC	2 cut(s)	13, 1557
BmgT120I	GGNCC	2 cut(s)	13, 1557
BmiI	GGNNCC	8 cut(s)	6, 141, 186, 313, 1281, 1353, 1559, 2114
BmrFI	CCNGG	1 cut(s)	1263
BmsI	GCATC	5 cut(s)	797, 1303, 1729, 1828, 2101
BpiI	GAAGAC	4 cut(s)	278, 438, 908, 2193
BpmI	CTGGAG	1 cut(s)	1648
BpuEI	CTTGAG	1 cut(s)	263
BsaAI	YACGTR	1 cut(s)	1685
BsaBI	GATNNNNATC	1 cut(s)	1602
BsaHI	GRCGYC	1 cut(s)	5
BsaI	GGTCTC	2 cut(s)	377, 1534
BsaJI	CCNNGG	3 cut(s)	27, 1262, 1544
BsaWI	WCCGGW	1 cut(s)	919
Bsc4I	CCNNNNNNNGG	6 cut(s)	52, 464, 866, 906, 1316, 1925
Bse1I	ACTGG	3 cut(s)	1327, 1353, 2195
Bse3DI	GCAATG	2 cut(s)	1249, 1375
Bse8I	GATNNNNATC	1 cut(s)	1602
BseAI	TCCGGA	1 cut(s)	919
BseBI	CCWGG	1 cut(s)	1263
BseDI	CCNNGG	3 cut(s)	27, 1262, 1544
BseGI	GGATG	6 cut(s)	812, 896, 1273, 1600, 2199, 2244
BseJI	GATNNNNATC	1 cut(s)	1602
BseLI	CCNNNNNNNGG	6 cut(s)	52, 464, 866, 906, 1316, 1925
BseMI	GCAATG	2 cut(s)	1249, 1375
BseMII	CTCAG	2 cut(s)	455, 516
BseNI	ACTGG	3 cut(s)	1327, 1353, 2195
BsePI	GCGCGC	1 cut(s)	810
BseRI	GAGGAG	3 cut(s)	150, 1529, 1979
BseXI	GCAGC	5 cut(s)	201, 247, 755, 758, 1354
BseYI	CCCAGC	1 cut(s)	2173
Bsh1236I	CGCG	3 cut(s)	65, 389, 812
Bsh1285I	CGRYCG	1 cut(s)	2278
BshFI	GGCC	1 cut(s)	286
BshNI	GGYRCC	5 cut(s)	4, 139, 184, 311, 1279
BsiEI	CGRYCG	1 cut(s)	2278
BsiHKAI	GWGCWC	2 cut(s)	1526, 2146
BsiSI	CCGG	1 cut(s)	920
BslFI	GGGAC	1 cut(s)	1543
BslI	CCNNNNNNNGG	6 cut(s)	52, 464, 866, 906, 1316, 1925
BsmAI	GTCTC	5 cut(s)	377, 523, 638, 1188, 1534
BsmBI	CGTCTC	1 cut(s)	638
BsmFI	GGGAC	1 cut(s)	1543
BsmI	GAATGC	3 cut(s)	56, 1622, 1742
BsnI	GGCC	1 cut(s)	286
Bso31I	GGTCTC	2 cut(s)	377, 1534
Bsp1286I	GDGCHC	2 cut(s)	1526, 2146
Bsp13I	TCCGGA	1 cut(s)	919
BspACI	CCGC	3 cut(s)	387, 1919, 2288
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	2 cut(s)	454, 517
BspEI	TCCGGA	1 cut(s)	919
BspFNI	CGCG	3 cut(s)	65, 389, 812
BspHI	TCATGA	2 cut(s)	1024, 1882
BspLI	GGNNCC	8 cut(s)	6, 141, 186, 313, 1281, 1353, 1559, 2114
BspMAI	CTGCAG	1 cut(s)	1720
BspPI	GGATC	7 cut(s)	998, 1220, 1346, 1359, 1412, 1910, 2057
BspQI	GCTCTTC	2 cut(s)	1035, 1514
BspT107I	GGYRCC	5 cut(s)	4, 139, 184, 311, 1279
BspTI	CTTAAG	1 cut(s)	2035
BspTNI	GGTCTC	2 cut(s)	377, 1534
BsrDI	GCAATG	2 cut(s)	1249, 1375
BsrI	ACTGG	3 cut(s)	1327, 1353, 2195
BssECI	CCNNGG	3 cut(s)	27, 1262, 1544
BssHII	GCGCGC	1 cut(s)	810
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	2 cut(s)	27, 1544
Bst2UI	CCWGG	1 cut(s)	1263
Bst4CI	ACNGT	3 cut(s)	475, 1092, 1432
Bst6I	CTCTTC	7 cut(s)	1029, 1035, 1069, 1506, 1514, 1532, 2036
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	2035
BstAPI	GCANNNNNTGC	1 cut(s)	1679
BstBAI	YACGTR	1 cut(s)	1685
BstC8I	GCNNGC	4 cut(s)	812, 1462, 1675, 1726
BstDEI	CTNAG	3 cut(s)	441, 525, 2207
BstENI	CCTNNNNNAGG	1 cut(s)	1314
BstF5I	GGATG	6 cut(s)	812, 896, 1273, 1600, 2199, 2244
BstFNI	CGCG	3 cut(s)	65, 389, 812
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	4 cut(s)	7, 65, 812, 814
BstMAI	GTCTC	5 cut(s)	377, 523, 638, 1188, 1534
BstMCI	CGRYCG	1 cut(s)	2278
BstMWI	GCNNNNNNNGC	3 cut(s)	62, 1679, 2141
BstNI	CCWGG	1 cut(s)	1263
BstNSI	RCATGY	1 cut(s)	1409
BstSCI	CCNGG	1 cut(s)	1261
BstSFI	CTRYAG	1 cut(s)	1716
BstUI	CGCG	3 cut(s)	65, 389, 812
BstV1I	GCAGC	5 cut(s)	201, 247, 755, 758, 1354
BstV2I	GAAGAC	4 cut(s)	278, 438, 908, 2193
BstX2I	RGATCY	2 cut(s)	1225, 1351
BstYI	RGATCY	2 cut(s)	1225, 1351
BsuRI	GGCC	1 cut(s)	286
BtsCI	GGATG	6 cut(s)	812, 896, 1273, 1600, 2199, 2244
BtsI	GCAGTG	3 cut(s)	756, 1713, 2144
BtsIMutI	CAGTG	4 cut(s)	756, 871, 1713, 2144
Cac8I	GCNNGC	4 cut(s)	812, 1462, 1675, 1726
CaiI	CAGNNNCTG	1 cut(s)	1348
CciI	TCATGA	2 cut(s)	1024, 1882
CfoI	GCGC	4 cut(s)	7, 65, 812, 814
Cfr13I	GGNCC	2 cut(s)	13, 1557
Csp6I	GTAC	5 cut(s)	405, 629, 1124, 1433, 1826
CspCI	CAANNNNNGTGG	2 cut(s)	813, 848
CviQI	GTAC	5 cut(s)	405, 629, 1124, 1433, 1826
DdeI	CTNAG	3 cut(s)	441, 525, 2207
DinI	GGCGCC	1 cut(s)	6
DraI	TTTAAA	1 cut(s)	2302
DraIII	CACNNNGTG	1 cut(s)	1615
EaeI	YGGCCR	1 cut(s)	284
Eam1104I	CTCTTC	7 cut(s)	1029, 1035, 1069, 1506, 1514, 1532, 2036
EarI	CTCTTC	7 cut(s)	1029, 1035, 1069, 1506, 1514, 1532, 2036
Eco130I	CCWWGG	2 cut(s)	27, 1544
Eco31I	GGTCTC	2 cut(s)	377, 1534
Eco47I	GGWCC	2 cut(s)	13, 1557
Eco57I	CTGAAG	1 cut(s)	251
Eco72I	CACGTG	1 cut(s)	1685
EcoNI	CCTNNNNNAGG	1 cut(s)	1314
EcoRI	GAATTC	1 cut(s)	758
EcoRII	CCWGG	1 cut(s)	1261
EcoT14I	CCWWGG	2 cut(s)	27, 1544
EcoT22I	ATGCAT	2 cut(s)	1744, 2094
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	27, 1544
Esp3I	CGTCTC	1 cut(s)	638
FalI	AAGNNNNNCTT	6 cut(s)	1145, 1177, 1158, 1190, 2190, 2222
FaqI	GGGAC	1 cut(s)	1543
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	5 cut(s)	215, 236, 744, 747, 1343
FokI	GGATG	6 cut(s)	819, 883, 1280, 1607, 2206, 2251
Fsp4HI	GCNGC	5 cut(s)	215, 236, 744, 747, 1343
FspBI	CTAG	3 cut(s)	408, 695, 1223
GlaI	GCGC	4 cut(s)	6, 64, 811, 813
GluI	GCNGC	5 cut(s)	215, 236, 744, 747, 1343
GsaI	CCCAGC	1 cut(s)	2177
GsuI	CTGGAG	1 cut(s)	1648
HaeII	RGCGCY	1 cut(s)	8
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	920
HhaI	GCGC	4 cut(s)	7, 65, 812, 814
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	4 cut(s)	5, 63, 810, 812
HinP1I	GCGC	4 cut(s)	5, 63, 810, 812
HinfI	GANTC	7 cut(s)	274, 445, 913, 1258, 1454, 1499, 1900
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	6 cut(s)	138, 479, 565, 628, 661, 1627
Hpy166II	GTNNAC	3 cut(s)	578, 669, 2019
Hpy188I	TCNGA	7 cut(s)	270, 322, 444, 517, 1417, 1510, 2050
Hpy188III	TCNNGA	6 cut(s)	920, 1025, 1355, 1451, 1627, 1883
Hpy8I	GTNNAC	3 cut(s)	578, 669, 2019
HpyAV	CCTTC	2 cut(s)	1022, 1310
HpyCH4III	ACNGT	3 cut(s)	475, 1092, 1432
HpyCH4IV	ACGT	4 cut(s)	631, 1149, 1684, 1731
HpyF10VI	GCNNNNNNNGC	3 cut(s)	62, 1679, 2141
HpyF3I	CTNAG	3 cut(s)	441, 525, 2207
HpySE526I	ACGT	4 cut(s)	631, 1149, 1684, 1731
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	4 cut(s)	5, 63, 810, 812
KasI	GGCGCC	1 cut(s)	4
Kpn2I	TCCGGA	1 cut(s)	919
LguI	GCTCTTC	2 cut(s)	1035, 1514
LmnI	GCTCC	4 cut(s)	48, 1414, 1750, 2140
Lsp1109I	GCAGC	5 cut(s)	201, 247, 755, 758, 1354
LweI	GCATC	5 cut(s)	797, 1303, 1729, 1828, 2101
MaeI	CTAG	3 cut(s)	408, 695, 1223
MaeII	ACGT	4 cut(s)	631, 1149, 1684, 1731
MaeIII	GTNAC	4 cut(s)	467, 588, 887, 1092
MfeI	CAATTG	4 cut(s)	686, 1253, 1904, 2096
MflI	RGATCY	2 cut(s)	1225, 1351
MhlI	GDGCHC	2 cut(s)	1526, 2146
MlsI	TGGCCA	1 cut(s)	286
MluNI	TGGCCA	1 cut(s)	286
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	268, 922, 1267
MmeI	TCCRAC	1 cut(s)	204
Mox20I	TGGCCA	1 cut(s)	286
Mph1103I	ATGCAT	2 cut(s)	1744, 2094
MroI	TCCGGA	1 cut(s)	919
MroXI	GAANNNNTTC	3 cut(s)	300, 1160, 1622
MscI	TGGCCA	1 cut(s)	286
MseI	TTAA	9 cut(s)	86, 375, 537, 584, 801, 1145, 1176, 2036, 2301
MslI	CAYNNNNRTG	2 cut(s)	641, 935
Msp20I	TGGCCA	1 cut(s)	286
MspCI	CTTAAG	1 cut(s)	2035
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	1 cut(s)	1263
MunI	CAATTG	4 cut(s)	686, 1253, 1904, 2096
Mva1269I	GAATGC	3 cut(s)	56, 1622, 1742
MvaI	CCWGG	1 cut(s)	1263
MvnI	CGCG	3 cut(s)	65, 389, 812
MwoI	GCNNNNNNNGC	3 cut(s)	62, 1679, 2141
NarI	GGCGCC	1 cut(s)	5
NlaIV	GGNNCC	8 cut(s)	6, 141, 186, 313, 1281, 1353, 1559, 2114
NmuCI	GTSAC	1 cut(s)	467
NsiI	ATGCAT	2 cut(s)	1744, 2094
NspI	RCATGY	1 cut(s)	1409
PagI	TCATGA	2 cut(s)	1024, 1882
PauI	GCGCGC	1 cut(s)	810
PciSI	GCTCTTC	2 cut(s)	1035, 1514
PctI	GAATGC	3 cut(s)	56, 1622, 1742
PdmI	GAANNNNTTC	3 cut(s)	300, 1160, 1622
PfeI	GAWTC	4 cut(s)	445, 1454, 1499, 1900
PflFI	GACNNNGTC	1 cut(s)	473
PflMI	CCANNNNNTGG	2 cut(s)	464, 866
PkrI	GCNGC	5 cut(s)	216, 237, 745, 748, 1344
Ple19I	CGATCG	1 cut(s)	2278
PleI	GAGTC	3 cut(s)	268, 921, 1266
PluTI	GGCGCC	1 cut(s)	8
PmaCI	CACGTG	1 cut(s)	1685
PmlI	CACGTG	1 cut(s)	1685
PpsI	GAGTC	3 cut(s)	268, 921, 1266
Ppu21I	YACGTR	1 cut(s)	1685
Psp6I	CCWGG	1 cut(s)	1261
PspCI	CACGTG	1 cut(s)	1685
PspFI	CCCAGC	1 cut(s)	2173
PspGI	CCWGG	1 cut(s)	1261
PspN4I	GGNNCC	8 cut(s)	6, 141, 186, 313, 1281, 1353, 1559, 2114
PspPI	GGNCC	2 cut(s)	13, 1557
PstI	CTGCAG	1 cut(s)	1720
PstNI	CAGNNNCTG	1 cut(s)	1348
PsuI	RGATCY	2 cut(s)	1225, 1351
PsyI	GACNNNGTC	1 cut(s)	473
PteI	GCGCGC	1 cut(s)	810
PvuI	CGATCG	1 cut(s)	2278
RsaI	GTAC	5 cut(s)	406, 630, 1125, 1434, 1827
RsaNI	GTAC	5 cut(s)	405, 629, 1124, 1433, 1826
RseI	CAYNNNNRTG	2 cut(s)	641, 935
SapI	GCTCTTC	2 cut(s)	1035, 1514
SaqAI	TTAA	9 cut(s)	86, 375, 537, 584, 801, 1145, 1176, 2036, 2301
SatI	GCNGC	5 cut(s)	215, 236, 744, 747, 1343
Sau96I	GGNCC	2 cut(s)	13, 1557
SchI	GAGTC	3 cut(s)	268, 922, 1267
ScrFI	CCNGG	1 cut(s)	1263
SduI	GDGCHC	2 cut(s)	1526, 2146
SfaNI	GCATC	5 cut(s)	797, 1303, 1729, 1828, 2101
SfcI	CTRYAG	1 cut(s)	1716
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	2 cut(s)	13, 1557
SmiMI	CAYNNNNRTG	2 cut(s)	641, 935
SmlI	CTYRAG	2 cut(s)	242, 2035
SmoI	CTYRAG	2 cut(s)	242, 2035
SsiI	CCGC	3 cut(s)	387, 1919, 2288
SspDI	GGCGCC	1 cut(s)	4
SspI	AATATT	1 cut(s)	850
SspMI	CTAG	3 cut(s)	408, 695, 1223
StyD4I	CCNGG	1 cut(s)	1261
StyI	CCWWGG	2 cut(s)	27, 1544
TaaI	ACNGT	3 cut(s)	475, 1092, 1432
TaiI	ACGT	4 cut(s)	634, 1152, 1687, 1734
TaqI	TCGA	5 cut(s)	343, 882, 975, 993, 2256
TaqII	GACCGA	1 cut(s)	473
TfiI	GAWTC	4 cut(s)	445, 1454, 1499, 1900
Tru1I	TTAA	9 cut(s)	86, 375, 537, 584, 801, 1145, 1176, 2036, 2301
Tru9I	TTAA	9 cut(s)	86, 375, 537, 584, 801, 1145, 1176, 2036, 2301
TscAI	CASTG	4 cut(s)	756, 871, 1720, 2151
TseFI	GTSAC	1 cut(s)	467
TseI	GCWGC	5 cut(s)	214, 235, 743, 746, 1342
Tsp45I	GTSAC	1 cut(s)	467
TspGWI	ACGGA	1 cut(s)	626
TspRI	CASTG	4 cut(s)	756, 871, 1720, 2151
Tth111I	GACNNNGTC	1 cut(s)	473
Van91I	CCANNNNNTGG	2 cut(s)	464, 866
Vha464I	CTTAAG	1 cut(s)	2035
VpaK11BI	GGWCC	2 cut(s)	13, 1557
XagI	CCTNNNNNAGG	1 cut(s)	1314
XapI	RAATTY	4 cut(s)	198, 713, 758, 1878
XceI	RCATGY	1 cut(s)	1409
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1551
XmiI	GTMKAC	1 cut(s)	577
XmnI	GAANNNNTTC	3 cut(s)	300, 1160, 1622
XspI	CTAG	3 cut(s)	408, 695, 1223
Zsp2I	ATGCAT	2 cut(s)	1744, 2094

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.