Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012594.1

Orthogroup ID

OG0005898

Physical Location & Seq

Genomic Coordinates Reverse (-)

16383 .. 19432

Gene Structure 3050 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012594.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1695 bp

atggagctatttgtctcatttctgtttgctcaaccagatacttcctgtgttctaatgaaatattgtgaagacttagacaacctttcaaagtattcatgggcagaagcagtgggaaagttcctaaacaaatctttgaaagcccagagcaaatttgatatttatggatgcgggcttctcataccacttttgttcaaggagcaagatggggttaaaggagaaacaaaaggtgaaaatgataaacaagagcacgaggaaggagaagtcgatcaagatgagctaaagaaggtggagaataagggaagaggaagaggattaagcaaacaattacgagaagaagtagaggaaagaagaaacctccaacacaactatgaattatctagcgtgaagaaaaacatggaagatatggatggaaagaaggagttgattaaaaatgatcagctaaattttcaaagcccctccactgcaattcaattgagtccaagggatgagactgaggtatctcaaattggccatgaaatgaggtctccaccaaaaggaactgcagtaacagttagaaagcagcaattggatccagattttgtatgtgatgttgtacctaaaaataagaaagcaaaaaagcaacatgctctatctgatccaactcctgcagtaccttcaagatcaattcaggatccttctggcaagaaagatcaacctataataataattgaggacaattctgtttcagaagaagaggagagcccaaggaaatggatgagctctaggaaaaaatgcttctgttttgaaagatatgaggtattcaaattaatggatgatgaacatcagcaaaaggtgaaagcattctggaatatggcagatcccaaggaactattctggagcgggaagaatgcaagtgtcacacgtgaagatatcggaaagttactaaaagacactgcagttgctagcaatctcattgatgcatttatggagttattggaacaacaagaacaaaattgtgtcaaaaaatcaacatacatatcaactttgtgctggaattatttaccaatacaagatgcacgaaagaaaggcaggaaaggaaagaaagatcaagtgcgagatgaggctcgtgatgaaatgggattgaatcaattagtttttgataggctattgaggagtgtggcaaaaagtgactatgtattcatcccagtaatatcaaagttccactattctctcctcatcttaaacaaaaatgaaaaaaaatggacacattacaaccctttgaggaagagatcagaacttcatattgatccatgctatgaggttgctaagcagatgcatcaaatgatacagaaatggttgtgtataacccaaaaagaagctccaaaaatgctgctgaaagaaacaaaaaggaagatgacaggcagacagcaaggaagttggacagaggtgccacttaatgaagatgaaaaaagatcgctaacttggatggtggatcacaatatcgacttcaaattagagaatgatctcaagtgtccgcaacaggattttaaatcattggattgcggcatatttattatgtactacatgaatcaactttcccaaggtcttcaagttgaagaagagatcagtgattgcagaatgtgggaattccggaaagatctgatcgagcgttttgtggatcatgaaaacagctggacgcagaactcaaccacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1985 PMD

Protein Analysis

564

Amino Acids

65.88

Weight (kDa)

6.48

Isoelectric Point (pI)

49.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005898)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09801 FvH4_2g09801 FvH4_2g09802 FvH4_2g10140 FvH4_2g10140 FvH4_2g10140
rosa_chinensis	RchiOBHm_Chr6g0266141 RchiOBHm_Chr6g0266151
rosa_laevigata	RLG00000014112 RLG00000014113
rosa_multiflora	Rmu_sc0004324.1_g000010 Rmu_sc0012594.1_g000003
rosa_roxburghii	Rroxscaffold_174G00435240 Rroxscaffold_174G00435320 Rroxscaffold_2G00113790 Rroxscaffold_7G00201870 Rroxscaffold_7G00201900
rosa_rugosa	Rorug06G0024300
rosa_samantha	Rh6AG144900 Rh6AG145000 Rh6BG145600 Rh6BG145700 Rh6CG142000 Rh6CG142100 Rh6DG130000 Rh6DG130100
rosa_wichuraiana	Rw6G012510 Rw6G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1426
AccBSI	CCGCTC	1 cut(s)	879
AccIII	TCCGGA	1 cut(s)	1629
AciI	CCGC	4 cut(s)	168, 879, 1514, 1542
AclWI	GGATC	9 cut(s)	563, 576, 629, 665, 678, 851, 1280, 1479, 1665
AcoI	YGGCCR	1 cut(s)	508
AcsI	RAATTY	3 cut(s)	149, 442, 1625
AcvI	CACGTG	1 cut(s)	902
AfaI	GTAC	3 cut(s)	594, 651, 1559
AfiI	CCNNNNNNNGG	1 cut(s)	533
AflIII	ACRYGT	1 cut(s)	899
AjuI	GAANNNNNNNTTGG	2 cut(s)	854, 886
AluBI	AGCT	6 cut(s)	7, 277, 439, 759, 1358, 1671
AluI	AGCT	6 cut(s)	7, 277, 439, 759, 1358, 1671
Alw21I	GWGCWC	2 cut(s)	249, 761
Alw26I	GTCTC	3 cut(s)	19, 482, 528
AlwI	GGATC	9 cut(s)	563, 576, 629, 665, 678, 851, 1280, 1479, 1665
Aor13HI	TCCGGA	1 cut(s)	1629
AoxI	GGCC	1 cut(s)	508
ApeKI	GCWGC	2 cut(s)	559, 1369
ApoI	RAATTY	3 cut(s)	149, 442, 1625
AseI	ATTAAT	1 cut(s)	806
Asp700I	GAANNNNTTC	1 cut(s)	839
AsuHPI	GGTGA	2 cut(s)	239, 844
AsuNHI	GCTAGC	1 cut(s)	941
BaeI	ACNNNNGTAYC	2 cut(s)	480, 513
BalI	TGGCCA	1 cut(s)	510
BamHI	GGATCC	2 cut(s)	568, 670
BanI	GGYRCC	1 cut(s)	1426
BanII	GRGCYC	2 cut(s)	743, 761
BauI	CACGAG	2 cut(s)	248, 1104
BbrPI	CACGTG	1 cut(s)	902
BbsI	GAAGAC	2 cut(s)	75, 1577
Bbv12I	GWGCWC	2 cut(s)	249, 761
BbvI	GCAGC	2 cut(s)	571, 1356
BccI	CCATC	3 cut(s)	197, 401, 1459
BclI	TGATCA	1 cut(s)	433
BcoDI	GTCTC	3 cut(s)	19, 482, 528
BfaI	CTAG	3 cut(s)	378, 762, 942
BfmI	CTRYAG	3 cut(s)	540, 645, 933
BglII	AGATCT	1 cut(s)	1636
BisI	GCNGC	3 cut(s)	560, 1370, 1543
BlpI	GCTNAGC	1 cut(s)	1305
BlsI	GCNGC	3 cut(s)	561, 1371, 1544
BmiI	GGNNCC	3 cut(s)	570, 672, 1428
BmrI	ACTGGG	1 cut(s)	1178
BmsI	GCATC	5 cut(s)	155, 946, 1042, 1302, 1324
BmtI	GCTAGC	1 cut(s)	945
BmuI	ACTGGG	1 cut(s)	1178
BpiI	GAAGAC	2 cut(s)	75, 1577
BpmI	CTGGAG	1 cut(s)	895
Bpu1102I	GCTNAGC	1 cut(s)	1305
BpuEI	CTTGAG	1 cut(s)	1490
BsaAI	YACGTR	1 cut(s)	902
BsaBI	GATNNNNATC	1 cut(s)	819
BsaI	GGTCTC	1 cut(s)	528
BsaJI	CCNNGG	4 cut(s)	479, 743, 861, 1579
BsaWI	WCCGGW	1 cut(s)	1629
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse1I	ACTGG	1 cut(s)	1184
Bse8I	GATNNNNATC	1 cut(s)	819
BseAI	TCCGGA	1 cut(s)	1629
BseDI	CCNNGG	4 cut(s)	479, 743, 861, 1579
BseGI	GGATG	7 cut(s)	170, 412, 490, 759, 817, 1179, 1470
BseJI	GATNNNNATC	1 cut(s)	819
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMII	CTCAG	1 cut(s)	483
BseNI	ACTGG	1 cut(s)	1184
BseRI	GAGGAG	3 cut(s)	749, 1165, 1202
BseXI	GCAGC	2 cut(s)	571, 1356
BshFI	GGCC	1 cut(s)	510
BshNI	GGYRCC	1 cut(s)	1426
BsiHKAI	GWGCWC	2 cut(s)	249, 761
BsiSI	CCGG	1 cut(s)	1630
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmAI	GTCTC	3 cut(s)	19, 482, 528
BsmI	GAATGC	2 cut(s)	839, 892
BsnI	GGCC	1 cut(s)	510
Bso31I	GGTCTC	1 cut(s)	528
Bsp1286I	GDGCHC	3 cut(s)	249, 743, 761
Bsp13I	TCCGGA	1 cut(s)	1629
Bsp1720I	GCTNAGC	1 cut(s)	1305
BspACI	CCGC	4 cut(s)	168, 879, 1514, 1542
BspANI	GGCC	1 cut(s)	510
BspCNI	CTCAG	1 cut(s)	484
BspEI	TCCGGA	1 cut(s)	1629
BspHI	TCATGA	1 cut(s)	1660
BspLI	GGNNCC	3 cut(s)	570, 672, 1428
BspMAI	CTGCAG	3 cut(s)	544, 649, 937
BspOI	GCTAGC	1 cut(s)	945
BspPI	GGATC	9 cut(s)	563, 576, 629, 665, 678, 851, 1280, 1479, 1665
BspT107I	GGYRCC	1 cut(s)	1426
BspTNI	GGTCTC	1 cut(s)	528
BsrBI	CCGCTC	1 cut(s)	879
BsrI	ACTGG	1 cut(s)	1184
BssECI	CCNNGG	4 cut(s)	479, 743, 861, 1579
BssSI	CACGAG	2 cut(s)	248, 1104
BssT1I	CCWWGG	4 cut(s)	479, 743, 861, 1579
Bst2BI	CACGAG	2 cut(s)	248, 1104
Bst4CI	ACNGT	1 cut(s)	550
Bst6I	CTCTTC	5 cut(s)	295, 301, 726, 1259, 1593
BstBAI	YACGTR	1 cut(s)	902
BstC8I	GCNNGC	2 cut(s)	170, 943
BstDEI	CTNAG	3 cut(s)	73, 492, 1305
BstF5I	GGATG	7 cut(s)	170, 412, 490, 759, 817, 1179, 1470
BstMAI	GTCTC	3 cut(s)	19, 482, 528
BstNSI	RCATGY	1 cut(s)	626
BstSFI	CTRYAG	3 cut(s)	540, 645, 933
BstV1I	GCAGC	2 cut(s)	571, 1356
BstV2I	GAAGAC	2 cut(s)	75, 1577
BstX2I	RGATCY	4 cut(s)	568, 670, 856, 1636
BstXI	CCANNNNNNTGG	1 cut(s)	750
BstYI	RGATCY	4 cut(s)	568, 670, 856, 1636
BsuRI	GGCC	1 cut(s)	510
BtsCI	GGATG	7 cut(s)	170, 412, 490, 759, 817, 1179, 1470
BtsI	GCAGTG	3 cut(s)	114, 459, 930
BtsIMutI	CAGTG	4 cut(s)	114, 459, 930, 1612
Cac8I	GCNNGC	2 cut(s)	170, 943
CciI	TCATGA	1 cut(s)	1660
CseI	GACGC	1 cut(s)	1684
Csp6I	GTAC	3 cut(s)	593, 650, 1558
CviAII	CATG	8 cut(s)	96, 394, 512, 623, 1290, 1564, 1661, 1692
CviQI	GTAC	3 cut(s)	593, 650, 1558
DdeI	CTNAG	3 cut(s)	73, 492, 1305
DraI	TTTAAA	1 cut(s)	1528
EaeI	YGGCCR	1 cut(s)	508
Eam1104I	CTCTTC	5 cut(s)	295, 301, 726, 1259, 1593
EarI	CTCTTC	5 cut(s)	295, 301, 726, 1259, 1593
Ecl136II	GAGCTC	1 cut(s)	759
Eco130I	CCWWGG	4 cut(s)	479, 743, 861, 1579
Eco24I	GRGCYC	2 cut(s)	743, 761
Eco31I	GGTCTC	1 cut(s)	528
Eco32I	GATATC	1 cut(s)	910
Eco53kI	GAGCTC	1 cut(s)	759
Eco72I	CACGTG	1 cut(s)	902
EcoICRI	GAGCTC	1 cut(s)	759
EcoRI	GAATTC	1 cut(s)	1625
EcoRV	GATATC	1 cut(s)	910
EcoT14I	CCWWGG	4 cut(s)	479, 743, 861, 1579
EcoT22I	ATGCAT	2 cut(s)	961, 1317
EcoT38I	GRGCYC	2 cut(s)	743, 761
ErhI	CCWWGG	4 cut(s)	479, 743, 861, 1579
FaeI	CATG	8 cut(s)	99, 397, 515, 626, 1293, 1567, 1664, 1695
FatI	CATG	8 cut(s)	95, 393, 511, 622, 1289, 1563, 1660, 1691
FauI	CCCGC	2 cut(s)	161, 872
FbaI	TGATCA	1 cut(s)	433
Fnu4HI	GCNGC	3 cut(s)	560, 1370, 1543
FokI	GGATG	7 cut(s)	177, 419, 497, 766, 824, 1166, 1477
FriOI	GRGCYC	2 cut(s)	743, 761
Fsp4HI	GCNGC	3 cut(s)	560, 1370, 1543
FspBI	CTAG	3 cut(s)	378, 762, 942
GluI	GCNGC	3 cut(s)	560, 1370, 1543
GsuI	CTGGAG	1 cut(s)	895
HaeIII	GGCC	1 cut(s)	510
HapII	CCGG	1 cut(s)	1630
HgaI	GACGC	1 cut(s)	1684
Hin1II	CATG	8 cut(s)	99, 397, 515, 626, 1293, 1567, 1664, 1695
HinfI	GANTC	3 cut(s)	475, 1123, 1567
HpaII	CCGG	1 cut(s)	1630
HphI	GGTGA	2 cut(s)	239, 844
Hpy188I	TCNGA	5 cut(s)	634, 727, 914, 1273, 1641
Hpy188III	TCNNGA	9 cut(s)	269, 572, 657, 668, 844, 874, 1106, 1630, 1661
HpyAV	CCTTC	5 cut(s)	248, 277, 409, 663, 684
HpyCH4III	ACNGT	1 cut(s)	550
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	9 cut(s)	464, 542, 647, 890, 935, 959, 1055, 1315, 1614
HpyF3I	CTNAG	3 cut(s)	73, 492, 1305
HpySE526I	ACGT	1 cut(s)	901
Hsp92II	CATG	8 cut(s)	99, 397, 515, 626, 1293, 1567, 1664, 1695
Kpn2I	TCCGGA	1 cut(s)	1629
Ksp22I	TGATCA	1 cut(s)	433
LmnI	GCTCC	4 cut(s)	4, 196, 876, 1363
Lsp1109I	GCAGC	2 cut(s)	571, 1356
LweI	GCATC	5 cut(s)	155, 946, 1042, 1302, 1324
MaeI	CTAG	3 cut(s)	378, 762, 942
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	4 cut(s)	544, 895, 918, 1166
MbiI	CCGCTC	1 cut(s)	879
MfeI	CAATTG	2 cut(s)	470, 563
MflI	RGATCY	4 cut(s)	568, 670, 856, 1636
MhlI	GDGCHC	3 cut(s)	249, 743, 761
MlsI	TGGCCA	1 cut(s)	510
MluNI	TGGCCA	1 cut(s)	510
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	3 cut(s)	382, 662, 1397
Mox20I	TGGCCA	1 cut(s)	510
Mph1103I	ATGCAT	2 cut(s)	961, 1317
MroI	TCCGGA	1 cut(s)	1629
MroXI	GAANNNNTTC	1 cut(s)	839
MscI	TGGCCA	1 cut(s)	510
MseI	TTAA	7 cut(s)	210, 314, 426, 806, 1220, 1434, 1527
MslI	CAYNNNNRTG	1 cut(s)	366
Msp20I	TGGCCA	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	1671
MspI	CCGG	1 cut(s)	1630
MunI	CAATTG	2 cut(s)	470, 563
Mva1269I	GAATGC	2 cut(s)	839, 892
NheI	GCTAGC	1 cut(s)	941
NlaIII	CATG	8 cut(s)	99, 397, 515, 626, 1293, 1567, 1664, 1695
NlaIV	GGNNCC	3 cut(s)	570, 672, 1428
NmuCI	GTSAC	2 cut(s)	895, 1166
NsiI	ATGCAT	2 cut(s)	961, 1317
NspI	RCATGY	1 cut(s)	626
PagI	TCATGA	1 cut(s)	1660
PctI	GAATGC	2 cut(s)	839, 892
PdmI	GAANNNNTTC	1 cut(s)	839
PfeI	GAWTC	2 cut(s)	1123, 1567
PkrI	GCNGC	3 cut(s)	561, 1371, 1544
PleI	GAGTC	1 cut(s)	483
PmaCI	CACGTG	1 cut(s)	902
PmlI	CACGTG	1 cut(s)	902
PpsI	GAGTC	1 cut(s)	483
Ppu21I	YACGTR	1 cut(s)	902
PshBI	ATTAAT	1 cut(s)	806
Psp124BI	GAGCTC	1 cut(s)	761
PspCI	CACGTG	1 cut(s)	902
PspN4I	GGNNCC	3 cut(s)	570, 672, 1428
PstI	CTGCAG	3 cut(s)	544, 649, 937
PsuI	RGATCY	4 cut(s)	568, 670, 856, 1636
PvuII	CAGCTG	1 cut(s)	1671
RsaI	GTAC	3 cut(s)	594, 651, 1559
RsaNI	GTAC	3 cut(s)	593, 650, 1558
RseI	CAYNNNNRTG	1 cut(s)	366
SacI	GAGCTC	1 cut(s)	761
SaqAI	TTAA	7 cut(s)	210, 314, 426, 806, 1220, 1434, 1527
SatI	GCNGC	3 cut(s)	560, 1370, 1543
SchI	GAGTC	1 cut(s)	484
SduI	GDGCHC	3 cut(s)	249, 743, 761
SfaNI	GCATC	5 cut(s)	155, 946, 1042, 1302, 1324
SfcI	CTRYAG	3 cut(s)	540, 645, 933
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	1 cut(s)	1505
SmoI	CTYRAG	1 cut(s)	1505
SsiI	CCGC	4 cut(s)	168, 879, 1514, 1542
SspI	AATATT	1 cut(s)	62
SspMI	CTAG	3 cut(s)	378, 762, 942
SstI	GAGCTC	1 cut(s)	761
StyI	CCWWGG	4 cut(s)	479, 743, 861, 1579
TaaI	ACNGT	1 cut(s)	550
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	3 cut(s)	264, 1482, 1644
TatI	WGTACW	1 cut(s)	1557
TauI	GCSGC	1 cut(s)	1545
TfiI	GAWTC	2 cut(s)	1123, 1567
Tru1I	TTAA	7 cut(s)	210, 314, 426, 806, 1220, 1434, 1527
Tru9I	TTAA	7 cut(s)	210, 314, 426, 806, 1220, 1434, 1527
TscAI	CASTG	4 cut(s)	114, 466, 937, 1612
TseFI	GTSAC	2 cut(s)	895, 1166
TseI	GCWGC	2 cut(s)	559, 1369
Tsp45I	GTSAC	2 cut(s)	895, 1166
TspRI	CASTG	4 cut(s)	114, 466, 937, 1612
VspI	ATTAAT	1 cut(s)	806
XapI	RAATTY	3 cut(s)	149, 442, 1625
XceI	RCATGY	1 cut(s)	626
XmnI	GAANNNNTTC	1 cut(s)	839
XspI	CTAG	3 cut(s)	378, 762, 942
Zsp2I	ATGCAT	2 cut(s)	961, 1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.