RLG00000014113

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0005898
Physical Location & Seq
Reverse (-)
47461280 .. 47465079
3800 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014113

Sequence Viewer

Length: 2130 bp
ATGGCACCGTATTGTCGAATTCGTTGTAGTGTGCTGCCAATGTTGGAAATAATGCAGCTACTTAAGGAAAGCCACTTGGAGTTGCTTCAGAAGACTCTATTTTGGCCATTGTTAGAAGCATTTCACAATGGCACCATTTCAGAATTACAATGCAAGGATTGTCGAACTCCCATACTAAAGATCATCAAAACTTTTAACCCAGAGACCGCAACCTTTCACTGTGGTACTAGAGCCATATCAATAAACACAGAAGACATATCTCAGATTCTTGGACTGCCACAACATGGTGACAGAGTCCAATTCGGTCATCTGGTTTGTCGTAAATCATACAAGTCAGACTTTACTGAGAGACATTTTAAGGGAATAGACAGGGTGAACCACAAACTGCTACATGGTCTACTATTAAAGTTACTGAATGGGAAAGAACAAACGGATATAGAAGATGTTGTACGTCTCACCCTAATGGAGTTGTTCATCACATTCCTGTTCACCCGATCACGTCTTCAATTGGTTCTAGTGAAGTATTGTGATGAATTTGACAAACTTTCAAGGTATTCATGGGCAGCAGCAGTGGGAGAATTCCTAAACAAATCTTTGAAAGCCCAGAGCAAAGTTGAAATTGAGGGATGCACGCTTCTCATTCCACTTTGGTTGTGTGAGAGAACAAATATTACACAACCAATCAGTGGGAGGGAGATCATCCAGGGCAACACACCATCCCTAATCAGATGGAGTCTTCCAGAACTGAACATCAAAATGCAAGAAATAACCATTTGCGAAATTGAGCGTTTATTCGAGGTGCAAAATGGGATCGAAATAGAAATAAAACCTGAACATGAAAATCATGAAGGAGAAGAGGAAGAGCTAAAGAAGAAAGACACGAAGCAAAAGGGAAGAGAATTATACCAACCGTTACAAAAAGAAATAGTGAAAAGAAGAAAGGTACAGAAGAACGACTATGAATTAAACGTGAAGAACAACTTCAAAGATAAACTTAAAGCAGAAGTTGATGGAGACATGGAGTTGATTGAGAAAGATCAGCTAGATCCTCAAATCCCCTGCACTGCAATTCAATTGAGTCCAAGGGATGACAATGAGGTGCCGCAAGTTGAGCATCAAATGAGGCTTCCTATGAAAGGAACTGGAGTGAAAGTTAGAAAGCAGCAACTGGATCCAGATTTTGTATGCAATGTAGTGCCCAAAAGGAGAAAGGCAAAAGATCAACATGCTCCATCTGATCCAATTCTTACAGTACCTACAAGGTCAATTCAGTATCCTGCTGGCAAGAAGGATGAACAGATATTAATTATCATTGATGATTCTGTTTCAGAAGAGGAGAAAAGCACAAGGAAAGTGAAGAGAACAAGGAAAGAATGCTTCCCTTTGGAAAGATGTGAGATATTCAAGTTATTGGATGATGAATATCAACAAAAGGTCAAAGCATTCTGGAGTATGACAAATCCAAAAGAACTATTTTGGAGTGGGAAAAATGCAAGCGTTGCACATGAAGATGTTAAAAAGTTGATACAAAACACTGCAGTAGCGAGCAACGTCATTGATGCATTCATGGAGCTATTGGAACAAAAACAGCACCAAAGTAGTGTAAAACAATCAACATACATATCAACTCTGTGCTGGAACTATGTACGAATGAAAGATGCACGAAAGAAAGGAAAGAAGGATCAAGTGCAAGATGAAGTTCATGATGAAGTGGGGTTCAATCAATTGGTTTTTGATCCGCTATTGGGTAGTATGGCACAAAGCGACTATATATTCTTCCCAATAATATCAAAGTTCCACTACACTCTCCTCGTCCTAAACAAAATTGAGAAAAAGTGGACACATTACAACCCCTTAAGGAAGAGATCAGAACTGCATATTGATCCATGCTATGAGGTTGCTAAGCAAATGCATCAATTGATACAAGATTGGTTCCATATAACCCAAAAAGAAGCTCCAAGAGCACTGCTAAACGGAACAAAAAGGAAGAAGATGGGGAAGAGGGAAGACTGGATGGAAGTTCCTCTTAGTGAAGATGAAAAAAGAACTCTAACTTGGATGATGGATAACAATATCGACTTCAAAATAGAGAATGACCGTATAAGTCCGCAACAGGACTTTAAATCGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

710

Amino Acids

82.97

Weight (kDa)

8.28

Isoelectric Point (pI)

48.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 57 - 250 7.7e-14 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 4, 131, 1099
AccB7I CCANNNNNTGG 2 cut(s) 284, 686
AccI GTMKAC 1 cut(s) 397
AciI CCGC 4 cut(s) 207, 1103, 1739, 2108
AclWI GGATC 8 cut(s) 818, 1040, 1166, 1179, 1232, 1689, 1730, 1877
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 3 cut(s) 18, 533, 578
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 5 cut(s) 226, 450, 945, 1254, 1647
AfiI CCNNNNNNNGG 4 cut(s) 284, 686, 1136, 1745
AflII CTTAAG 2 cut(s) 62, 1855
AgsI TTSAA 9 cut(s) 506, 549, 598, 617, 985, 1073, 1405, 1720, 2083
AjiI CACGTC 1 cut(s) 500
AjnI CCWGG 1 cut(s) 702
AjuI GAANNNNNNNTTGG 2 cut(s) 2038, 2070
AluBI AGCT 5 cut(s) 58, 865, 1042, 1573, 1955
AluI AGCT 5 cut(s) 58, 865, 1042, 1573, 1955
Alw21I GWGCWC 1 cut(s) 1966
Alw26I GTCTC 4 cut(s) 197, 343, 458, 1008
AlwI GGATC 8 cut(s) 818, 1040, 1166, 1179, 1232, 1689, 1730, 1877
AlwNI CAGNNNCTG 1 cut(s) 1168
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 5 cut(s) 34, 55, 563, 566, 1162
ApoI RAATTY 3 cut(s) 18, 533, 578
AseI ATTAAT 1 cut(s) 1304
Asp700I GAANNNNTTC 2 cut(s) 120, 980
AsuHPI GGTGA 4 cut(s) 299, 385, 448, 481
BaeGI GKGCMC 1 cut(s) 1200
BalI TGGCCA 1 cut(s) 106
BamHI GGATCC 1 cut(s) 1171
BanI GGYRCC 3 cut(s) 4, 131, 1099
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BbsI GAAGAC 5 cut(s) 98, 258, 494, 728, 2013
Bbv12I GWGCWC 1 cut(s) 1966
BbvI GCAGC 5 cut(s) 21, 67, 575, 578, 1174
BccI CCATC 7 cut(s) 723, 724, 1004, 1240, 1987, 2008, 2056
BciT130I CCWGG 1 cut(s) 704
BciVI GTATCC 1 cut(s) 1284
BcoDI GTCTC 4 cut(s) 197, 343, 458, 1008
BfaI CTAG 3 cut(s) 228, 515, 1043
BfmI CTRYAG 1 cut(s) 1536
BfrI CTTAAG 2 cut(s) 62, 1855
BfuI GTATCC 1 cut(s) 1284
BisI GCNGC 6 cut(s) 35, 56, 564, 567, 1103, 1163
BlpI GCTNAGC 1 cut(s) 1902
BlsI GCNGC 6 cut(s) 36, 57, 565, 568, 1104, 1164
Bme1390I CCNGG 1 cut(s) 704
BmgBI CACGTC 1 cut(s) 500
BmiI GGNNCC 5 cut(s) 6, 133, 1101, 1173, 1934
BmrFI CCNGG 1 cut(s) 704
BmsI GCATC 5 cut(s) 617, 1123, 1549, 1648, 1921
BpiI GAAGAC 5 cut(s) 98, 258, 494, 728, 2013
BpmI CTGGAG 2 cut(s) 1164, 1468
Bpu1102I GCTNAGC 1 cut(s) 1902
BsaBI GATNNNNATC 1 cut(s) 1422
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 2 cut(s) 703, 1082
BsaXI ACNNNNNCTCC 2 cut(s) 1137, 1167
Bsc4I CCNNNNNNNGG 4 cut(s) 284, 686, 1136, 1745
Bse1I ACTGG 3 cut(s) 1147, 1173, 2015
Bse3DI GCAATG 1 cut(s) 1195
Bse8I GATNNNNATC 1 cut(s) 1422
BseBI CCWGG 1 cut(s) 704
BseDI CCNNGG 2 cut(s) 703, 1082
BseGI GGATG 8 cut(s) 632, 699, 716, 1093, 1297, 1420, 2019, 2064
BseJI GATNNNNATC 1 cut(s) 1422
BseLI CCNNNNNNNGG 4 cut(s) 284, 686, 1136, 1745
BseMI GCAATG 1 cut(s) 1195
BseMII CTCAG 2 cut(s) 275, 336
BseNI ACTGG 3 cut(s) 1147, 1173, 2015
BseRI GAGGAG 2 cut(s) 1349, 1799
BseSI GKGCMC 1 cut(s) 1200
BseXI GCAGC 5 cut(s) 21, 67, 575, 578, 1174
BsgI GTGCAG 1 cut(s) 1045
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 3 cut(s) 4, 131, 1099
BsiHKAI GWGCWC 1 cut(s) 1966
BslI CCNNNNNNNGG 4 cut(s) 284, 686, 1136, 1745
BsmAI GTCTC 4 cut(s) 197, 343, 458, 1008
BsmBI CGTCTC 1 cut(s) 458
BsmI GAATGC 3 cut(s) 1379, 1442, 1562
BsnI GGCC 1 cut(s) 106
Bso31I GGTCTC 1 cut(s) 197
Bsp1286I GDGCHC 2 cut(s) 1200, 1966
Bsp1720I GCTNAGC 1 cut(s) 1902
BspACI CCGC 4 cut(s) 207, 1103, 1739, 2108
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 2 cut(s) 274, 337
BspHI TCATGA 2 cut(s) 844, 1702
BspLI GGNNCC 5 cut(s) 6, 133, 1101, 1173, 1934
BspMAI CTGCAG 1 cut(s) 1540
BspPI GGATC 8 cut(s) 818, 1040, 1166, 1179, 1232, 1689, 1730, 1877
BspQI GCTCTTC 1 cut(s) 855
BspT107I GGYRCC 3 cut(s) 4, 131, 1099
BspTI CTTAAG 2 cut(s) 62, 1855
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 1195
BsrI ACTGG 3 cut(s) 1147, 1173, 2015
BssECI CCNNGG 2 cut(s) 703, 1082
BssT1I CCWWGG 1 cut(s) 1082
Bst2UI CCWGG 1 cut(s) 704
Bst4CI ACNGT 5 cut(s) 9, 221, 912, 1252, 2099
Bst6I CTCTTC 7 cut(s) 849, 855, 889, 1326, 1352, 1856, 1994
BstAFI CTTAAG 2 cut(s) 62, 1855
BstAPI GCANNNNNTGC 1 cut(s) 1499
BstC8I GCNNGC 4 cut(s) 632, 1282, 1495, 1546
BstDEI CTNAG 4 cut(s) 261, 345, 1902, 2027
BstENI CCTNNNNNAGG 1 cut(s) 1134
BstF5I GGATG 8 cut(s) 632, 699, 716, 1093, 1297, 1420, 2019, 2064
BstMAI GTCTC 4 cut(s) 197, 343, 458, 1008
BstMWI GCNNNNNNNGC 3 cut(s) 1111, 1499, 1961
BstNI CCWGG 1 cut(s) 704
BstNSI RCATGY 1 cut(s) 1229
BstSCI CCNGG 1 cut(s) 702
BstSFI CTRYAG 1 cut(s) 1536
BstSLI GKGCMC 1 cut(s) 1200
BstV1I GCAGC 5 cut(s) 21, 67, 575, 578, 1174
BstV2I GAAGAC 5 cut(s) 98, 258, 494, 728, 2013
BstX2I RGATCY 2 cut(s) 1045, 1171
BstYI RGATCY 2 cut(s) 1045, 1171
BsuI GTATCC 1 cut(s) 1284
BsuRI GGCC 1 cut(s) 106
BtrI CACGTC 1 cut(s) 500
BtsCI GGATG 8 cut(s) 632, 699, 716, 1093, 1297, 1420, 2019, 2064
BtsI GCAGTG 4 cut(s) 576, 1062, 1533, 1964
BtsIMutI CAGTG 6 cut(s) 217, 576, 691, 1062, 1533, 1964
Cac8I GCNNGC 4 cut(s) 632, 1282, 1495, 1546
CaiI CAGNNNCTG 1 cut(s) 1168
CciI TCATGA 2 cut(s) 844, 1702
Csp6I GTAC 5 cut(s) 225, 449, 944, 1253, 1646
CspCI CAANNNNNGTGG 2 cut(s) 633, 668
CviQI GTAC 5 cut(s) 225, 449, 944, 1253, 1646
DdeI CTNAG 4 cut(s) 261, 345, 1902, 2027
DraI TTTAAA 1 cut(s) 2122
EaeI YGGCCR 1 cut(s) 104
Eam1104I CTCTTC 7 cut(s) 849, 855, 889, 1326, 1352, 1856, 1994
EarI CTCTTC 7 cut(s) 849, 855, 889, 1326, 1352, 1856, 1994
Eco130I CCWWGG 1 cut(s) 1082
Eco31I GGTCTC 1 cut(s) 197
Eco57I CTGAAG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 1134
EcoRI GAATTC 2 cut(s) 18, 578
EcoRII CCWGG 1 cut(s) 702
EcoT14I CCWWGG 1 cut(s) 1082
EcoT22I ATGCAT 2 cut(s) 1564, 1914
ErhI CCWWGG 1 cut(s) 1082
Esp3I CGTCTC 1 cut(s) 458
FalI AAGNNNNNCTT 8 cut(s) 323, 355, 965, 997, 978, 1010, 2010, 2042
FblI GTMKAC 1 cut(s) 397
Fnu4HI GCNGC 6 cut(s) 35, 56, 564, 567, 1103, 1163
FokI GGATG 8 cut(s) 639, 686, 703, 1100, 1304, 1427, 2026, 2071
Fsp4HI GCNGC 6 cut(s) 35, 56, 564, 567, 1103, 1163
FspBI CTAG 3 cut(s) 228, 515, 1043
GluI GCNGC 6 cut(s) 35, 56, 564, 567, 1103, 1163
GsuI CTGGAG 2 cut(s) 1164, 1468
HaeIII GGCC 1 cut(s) 106
HinfI GANTC 6 cut(s) 94, 265, 294, 733, 1078, 1319
HphI GGTGA 4 cut(s) 299, 385, 448, 481
Hpy166II GTNNAC 4 cut(s) 376, 398, 489, 1839
Hpy188I TCNGA 8 cut(s) 90, 142, 264, 337, 728, 1237, 1330, 1870
Hpy188III TCNNGA 5 cut(s) 740, 845, 1175, 1447, 1703
Hpy8I GTNNAC 4 cut(s) 376, 398, 489, 1839
HpyAV CCTTC 3 cut(s) 842, 1282, 1672
HpyCH4III ACNGT 5 cut(s) 9, 221, 912, 1252, 2099
HpyCH4IV ACGT 4 cut(s) 451, 499, 969, 1551
HpyF10VI GCNNNNNNNGC 3 cut(s) 1111, 1499, 1961
HpyF3I CTNAG 4 cut(s) 261, 345, 1902, 2027
HpySE526I ACGT 4 cut(s) 451, 499, 969, 1551
LguI GCTCTTC 1 cut(s) 855
LmnI GCTCC 3 cut(s) 1234, 1570, 1960
Lsp1109I GCAGC 5 cut(s) 21, 67, 575, 578, 1174
LweI GCATC 5 cut(s) 617, 1123, 1549, 1648, 1921
MaeI CTAG 3 cut(s) 228, 515, 1043
MaeII ACGT 4 cut(s) 451, 499, 969, 1551
MaeIII GTNAC 3 cut(s) 287, 408, 912
MfeI CAATTG 4 cut(s) 506, 1073, 1724, 1916
MflI RGATCY 2 cut(s) 1045, 1171
MhlI GDGCHC 2 cut(s) 1200, 1966
MlsI TGGCCA 1 cut(s) 106
MluNI TGGCCA 1 cut(s) 106
MlyI GAGTC 4 cut(s) 88, 303, 742, 1087
MmeI TCCRAC 1 cut(s) 24
Mox20I TGGCCA 1 cut(s) 106
Mph1103I ATGCAT 2 cut(s) 1564, 1914
MroXI GAANNNNTTC 2 cut(s) 120, 980
MscI TGGCCA 1 cut(s) 106
MslI CAYNNNNRTG 3 cut(s) 461, 755, 1509
Msp20I TGGCCA 1 cut(s) 106
MspCI CTTAAG 2 cut(s) 62, 1855
MspR9I CCNGG 1 cut(s) 704
MunI CAATTG 4 cut(s) 506, 1073, 1724, 1916
Mva1269I GAATGC 3 cut(s) 1379, 1442, 1562
MvaI CCWGG 1 cut(s) 704
MwoI GCNNNNNNNGC 3 cut(s) 1111, 1499, 1961
NlaIV GGNNCC 5 cut(s) 6, 133, 1101, 1173, 1934
NmuCI GTSAC 1 cut(s) 287
NsiI ATGCAT 2 cut(s) 1564, 1914
NspI RCATGY 1 cut(s) 1229
PagI TCATGA 2 cut(s) 844, 1702
PciSI GCTCTTC 1 cut(s) 855
PctI GAATGC 3 cut(s) 1379, 1442, 1562
PdmI GAANNNNTTC 2 cut(s) 120, 980
PfeI GAWTC 2 cut(s) 265, 1319
PflFI GACNNNGTC 1 cut(s) 293
PflMI CCANNNNNTGG 2 cut(s) 284, 686
PkrI GCNGC 6 cut(s) 36, 57, 565, 568, 1104, 1164
PleI GAGTC 4 cut(s) 88, 302, 741, 1086
PpsI GAGTC 4 cut(s) 88, 302, 741, 1086
PshBI ATTAAT 1 cut(s) 1304
Psp6I CCWGG 1 cut(s) 702
PspGI CCWGG 1 cut(s) 702
PspN4I GGNNCC 5 cut(s) 6, 133, 1101, 1173, 1934
PsrI GAACNNNNNNTAC 2 cut(s) 655, 687
PstI CTGCAG 1 cut(s) 1540
PstNI CAGNNNCTG 1 cut(s) 1168
PsuI RGATCY 2 cut(s) 1045, 1171
PsyI GACNNNGTC 1 cut(s) 293
RsaI GTAC 5 cut(s) 226, 450, 945, 1254, 1647
RsaNI GTAC 5 cut(s) 225, 449, 944, 1253, 1646
RseI CAYNNNNRTG 3 cut(s) 461, 755, 1509
SapI GCTCTTC 1 cut(s) 855
SatI GCNGC 6 cut(s) 35, 56, 564, 567, 1103, 1163
SchI GAGTC 4 cut(s) 88, 303, 742, 1087
ScrFI CCNGG 1 cut(s) 704
SduI GDGCHC 2 cut(s) 1200, 1966
SfaNI GCATC 5 cut(s) 617, 1123, 1549, 1648, 1921
SfcI CTRYAG 1 cut(s) 1536
SmiMI CAYNNNNRTG 3 cut(s) 461, 755, 1509
SmlI CTYRAG 2 cut(s) 62, 1855
SmoI CTYRAG 2 cut(s) 62, 1855
SsiI CCGC 4 cut(s) 207, 1103, 1739, 2108
SspI AATATT 1 cut(s) 670
SspMI CTAG 3 cut(s) 228, 515, 1043
StyD4I CCNGG 1 cut(s) 702
StyI CCWWGG 1 cut(s) 1082
TaaI ACNGT 5 cut(s) 9, 221, 912, 1252, 2099
TaiI ACGT 4 cut(s) 454, 502, 972, 1554
TaqI TCGA 5 cut(s) 16, 163, 795, 813, 2076
TaqII GACCGA 1 cut(s) 293
TauI GCSGC 1 cut(s) 1105
TfiI GAWTC 2 cut(s) 265, 1319
TscAI CASTG 6 cut(s) 224, 576, 691, 1069, 1540, 1971
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 5 cut(s) 34, 55, 563, 566, 1162
Tsp45I GTSAC 1 cut(s) 287
TspGWI ACGGA 2 cut(s) 446, 1989
TspRI CASTG 6 cut(s) 224, 576, 691, 1069, 1540, 1971
Tth111I GACNNNGTC 1 cut(s) 293
Van91I CCANNNNNTGG 2 cut(s) 284, 686
Vha464I CTTAAG 2 cut(s) 62, 1855
VspI ATTAAT 1 cut(s) 1304
XagI CCTNNNNNAGG 1 cut(s) 1134
XapI RAATTY 3 cut(s) 18, 533, 578
XceI RCATGY 1 cut(s) 1229
XmiI GTMKAC 1 cut(s) 397
XmnI GAANNNNTTC 2 cut(s) 120, 980
XspI CTAG 3 cut(s) 228, 515, 1043
Zsp2I ATGCAT 2 cut(s) 1564, 1914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.