RchiOBHm_Chr6g0266151

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0005898
Physical Location & Seq
Forward (+)
22310599 .. 22315434
4836 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23870

Sequence Viewer

Length: 2310 bp
ATGAGCAGAAAGCCATATCTTCAAATTCGTTGCTCTGTGCTGCCAATGTTGGAAACAATGCGGATAGTTAAGGACTGCCACTTGGAGTTGCTTCGGAGAACTCCATTTTGGCCATTGTTAGAAGCATTTCGCAATGGCACCATTTCGGAATCACAATGTAAGGAGTATCGAACTCCCATACTCAATATCATCCAAACTTTTAATCCAGAGACAACAAGTTTTCAGTTTGGTAGTAGAGATGTTACTATAAGCACGGAAGACATCTCTCAGATTCTTGGACTGCCTCAACATGGTGAAGCCGTTCTATTCAATCTCCCGGGCTCATGTAAATCATACAAACCAGAGATCATTGACAGACATTTCAAGAGAGGAGGAAGGCAGAACCACAAATCGCTGCACAGTGTATTGTTAAAATTACTGAATGGGAAAGAACAAACAGATATAGAAGATGTTGTACGTCTTACCCTCATGGAGCTATTTGTCTCATTTCTGTTTGCTCAACCAGATAGTACCTGTGTTCTAATGAAATATTGTGAAGACTTAGACAACCTTTCAAAGTATTCATGGGCAGAAGCAGTGGGAAAGTTCCTAAACAAATCTTTGAAAGCCCAGAGCAAATTTGATATTTATGGATGCGGGCTTCTCATACCATTTTGGTTTTGTGAGAAAACAAAAATTACACAACCAATCAGTGGGAGGGAGGTAATTGAGGGACATACACCAGCCCTAATCAAATGGAGCCTTCCAGAGCTGAACGCCAAAATGCAACAAATAGCCATTTGCAATATTAAGCTTTTGTTCAAGGATCAAGATGGGGTTAAAAGAGAAACAAAAGGTGAAAATGATAAACAAGAGCACGAGGAAGGAGAAGTCGATCAAGATGAGCTAAAGAAGGTGGAGAATAAGGGAAGAGGAAGAGGAAGAGGATTAAGCAAACAATTACAAGAAGAAGTAGAGGAAAGAAGAAACCTCCAACACAACTATGAATTATCTAGCGTGAAGAAAAACATGGAAGATATGGATGGAAAGAAGGAGTTGATTAAAAATGATCAGCTAAATTTTCAAAGCCCCTCCACTGCAATTCAATTGAGTCCAAGGGATGAGATTGAGGTATCTCAAATTGGCCATGAAATGAGGTCTCCACCAAAAGGAACTGCAGTAACAGTTAGAAAGCAGCAATTGGATCCAGATTTTGTATGTGATGTAGTACCTAAAAATAAGAAAGCAAAAAAGCAACATGCTCTATCTGATCCAACTCCTGCAGTACCTTCAAGATCAATTCAGGATCCTTCTGGCAAGAAAGATCAACCTATAATAATAATTGAGGACAATTCTGTTTCAGAAGAAGAGGAGAGCCCAAGGAAATGGATGAGCTCTAGGAAAAAATGCTTCTGTTTTGAAAGATATGAGGTATTCAAATTAATGGATCATGAACATCAGCAAAAGGTGAAAGCATTCTGGAATATAGCAGATCCCAAGGAACTATTCTGGAGAGGGAAGAATGCAAGTGTCACACGTGAAGATGTGGGAAAGTTACTAAAAGACACTGCAGTTGCTAGCAATCTCATTGATGCATTTATGGAGTTATTGGAACAACAACAACAAAATTGTGTCAAAAAATCAACATACATATCAACTTTGTGCTGGAATTATTTACCAATACAAGATGCACGAAAGAAAGGCAGGAAAGGAAAGAAAGATAAAGTGCGAGATGAGGCTCGTGATGAAATGGGATTGAATCAATTAGTTTTTGATCAGCTATTGAGGAGTGTGGCAAAAAGTGACTATGTATTCATCCCAGTAATATCAAAGTTCCACTATTCTCTCCTCATCTTAAACAAAAATGAAAAAAAATGGACACATTACAACCCTTTGAGGAAGAGATCAGAACTTCATATTGATCCATGCTATGAGGTTGCTAAGCAGATGCATCAAATGATACAAAAATGGTTGTGTATAACCCAAAAAGAAGCTCCAAAAATGCTGCTGAAAGAAACAAAAAGGAAGATGACAGGTAGACAGCAAGGAAGTTGGACAGAGGTGCCACTTAATGAAGATGAAAAAAGATCGCTAACTTGGATGGTGGATCACAATATCGACTTCAAATTAGAGAATGATCTCAAGTGTCCGCAACAGGATTTTAAATCATTGGATTGCGGCATCTTTATTATGTACTACATGAATCAACTTTCCCAAGGTCTTCAAGTTGAAGAAGAGATCAGTGATTGCAGAATGTGGGAATTCCGGAAAGATCTGATCGAGCGTTTTGTGGATCATGAAAACAGCTGGACGCAGAACTCAACCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

769

Amino Acids

89.57

Weight (kDa)

8.4

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 58 - 257 7.1e-14 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 137, 2041
AccB7I CCANNNNNTGG 1 cut(s) 692
AccI GTMKAC 1 cut(s) 2017
AccIII TCCGGA 1 cut(s) 2244
AciI CCGC 4 cut(s) 61, 636, 2129, 2157
AcoI YGGCCR 2 cut(s) 110, 1123
AcsI RAATTY 4 cut(s) 24, 617, 1057, 2240
AcvI CACGTG 1 cut(s) 1517
AfaI GTAC 5 cut(s) 456, 511, 1209, 1266, 2174
AfiI CCNNNNNNNGG 3 cut(s) 290, 692, 1148
AflIII ACRYGT 1 cut(s) 1514
AjuI GAANNNNNNNTTGG 4 cut(s) 91, 123, 1469, 1501
AluBI AGCT 9 cut(s) 475, 751, 793, 886, 1054, 1374, 1759, 1973, 2286
AluI AGCT 9 cut(s) 475, 751, 793, 886, 1054, 1374, 1759, 1973, 2286
Alw21I GWGCWC 2 cut(s) 858, 1376
Alw26I GTCTC 3 cut(s) 203, 487, 1143
Ama87I CYCGRG 1 cut(s) 316
Aor13HI TCCGGA 1 cut(s) 2244
AoxI GGCC 2 cut(s) 110, 1123
ApeKI GCWGC 4 cut(s) 40, 394, 1174, 1984
ApoI RAATTY 4 cut(s) 24, 617, 1057, 2240
AseI ATTAAT 1 cut(s) 1421
Asp700I GAANNNNTTC 3 cut(s) 126, 300, 1454
AsuC2I CCSGG 2 cut(s) 317, 318
AsuHPI GGTGA 3 cut(s) 305, 848, 1459
AsuNHI GCTAGC 1 cut(s) 1556
AvaI CYCGRG 1 cut(s) 316
BalI TGGCCA 2 cut(s) 112, 1125
BamHI GGATCC 2 cut(s) 1183, 1285
BanI GGYRCC 2 cut(s) 137, 2041
BanII GRGCYC 3 cut(s) 323, 1358, 1376
BarI GAAGNNNNNNTAC 2 cut(s) 438, 470
BauI CACGAG 2 cut(s) 857, 1719
BbrPI CACGTG 1 cut(s) 1517
BbsI GAAGAC 3 cut(s) 264, 543, 2192
Bbv12I GWGCWC 2 cut(s) 858, 1376
BbvI GCAGC 4 cut(s) 27, 381, 1186, 1971
BccI CCATC 3 cut(s) 806, 1016, 2074
BceAI ACGGC 1 cut(s) 284
BclI TGATCA 2 cut(s) 1048, 1753
BcnI CCSGG 2 cut(s) 317, 318
BcoDI GTCTC 3 cut(s) 203, 487, 1143
BfaI CTAG 3 cut(s) 993, 1377, 1557
BfmI CTRYAG 3 cut(s) 1155, 1260, 1548
BglII AGATCT 1 cut(s) 2251
BisI GCNGC 5 cut(s) 41, 395, 1175, 1985, 2158
BlpI GCTNAGC 1 cut(s) 1920
BlsI GCNGC 5 cut(s) 42, 396, 1176, 1986, 2159
Bme1390I CCNGG 2 cut(s) 317, 318
BmeT110I CYCGRG 1 cut(s) 316
BmiI GGNNCC 5 cut(s) 139, 740, 1185, 1287, 2043
BmrFI CCNGG 2 cut(s) 317, 318
BmrI ACTGGG 1 cut(s) 1793
BmsI GCATC 6 cut(s) 623, 1561, 1657, 1917, 1939, 2169
BmtI GCTAGC 1 cut(s) 1560
BmuI ACTGGG 1 cut(s) 1793
BpiI GAAGAC 3 cut(s) 264, 543, 2192
BpmI CTGGAG 1 cut(s) 1510
Bpu1102I GCTNAGC 1 cut(s) 1920
BpuEI CTTGAG 1 cut(s) 2105
BpuMI CCSGG 2 cut(s) 317, 318
BsaAI YACGTR 1 cut(s) 1517
BsaI GGTCTC 1 cut(s) 1143
BsaJI CCNNGG 5 cut(s) 316, 1094, 1358, 1476, 2194
BsaWI WCCGGW 1 cut(s) 2244
Bsc4I CCNNNNNNNGG 3 cut(s) 290, 692, 1148
Bse1I ACTGG 1 cut(s) 1799
Bse3DI GCAATG 1 cut(s) 139
BseAI TCCGGA 1 cut(s) 2244
BseDI CCNNGG 5 cut(s) 316, 1094, 1358, 1476, 2194
BseGI GGATG 7 cut(s) 189, 638, 1027, 1105, 1374, 1794, 2085
BseLI CCNNNNNNNGG 3 cut(s) 290, 692, 1148
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 281
BseNI ACTGG 1 cut(s) 1799
BseRI GAGGAG 4 cut(s) 384, 1364, 1780, 1817
BseXI GCAGC 4 cut(s) 27, 381, 1186, 1971
BsgI GTGCAG 1 cut(s) 380
BshFI GGCC 2 cut(s) 112, 1125
BshNI GGYRCC 2 cut(s) 137, 2041
BsiHKAI GWGCWC 2 cut(s) 858, 1376
BsiHKCI CYCGRG 1 cut(s) 316
BsiSI CCGG 2 cut(s) 317, 2245
BslFI GGGAC 1 cut(s) 726
BslI CCNNNNNNNGG 3 cut(s) 290, 692, 1148
BsmAI GTCTC 3 cut(s) 203, 487, 1143
BsmFI GGGAC 1 cut(s) 726
BsmI GAATGC 2 cut(s) 1454, 1507
BsnI GGCC 2 cut(s) 112, 1125
Bso31I GGTCTC 1 cut(s) 1143
BsoBI CYCGRG 1 cut(s) 316
Bsp1286I GDGCHC 4 cut(s) 323, 858, 1358, 1376
Bsp13I TCCGGA 1 cut(s) 2244
Bsp1720I GCTNAGC 1 cut(s) 1920
BspACI CCGC 4 cut(s) 61, 636, 2129, 2157
BspANI GGCC 2 cut(s) 112, 1125
BspCNI CTCAG 1 cut(s) 280
BspEI TCCGGA 1 cut(s) 2244
BspHI TCATGA 2 cut(s) 1429, 2275
BspLI GGNNCC 5 cut(s) 139, 740, 1185, 1287, 2043
BspMAI CTGCAG 3 cut(s) 1159, 1264, 1552
BspOI GCTAGC 1 cut(s) 1560
BspT107I GGYRCC 2 cut(s) 137, 2041
BspTNI GGTCTC 1 cut(s) 1143
BsrDI GCAATG 1 cut(s) 139
BsrI ACTGG 1 cut(s) 1799
BssECI CCNNGG 5 cut(s) 316, 1094, 1358, 1476, 2194
BssSI CACGAG 2 cut(s) 857, 1719
BssT1I CCWWGG 4 cut(s) 1094, 1358, 1476, 2194
Bst2BI CACGAG 2 cut(s) 857, 1719
Bst4CI ACNGT 2 cut(s) 401, 1165
Bst6I CTCTTC 6 cut(s) 904, 910, 916, 1341, 1874, 2208
BstBAI YACGTR 1 cut(s) 1517
BstC8I GCNNGC 2 cut(s) 638, 1558
BstDEI CTNAG 3 cut(s) 267, 541, 1920
BstF5I GGATG 7 cut(s) 189, 638, 1027, 1105, 1374, 1794, 2085
BstMAI GTCTC 3 cut(s) 203, 487, 1143
BstNSI RCATGY 1 cut(s) 1241
BstSCI CCNGG 2 cut(s) 315, 316
BstSFI CTRYAG 3 cut(s) 1155, 1260, 1548
BstV1I GCAGC 4 cut(s) 27, 381, 1186, 1971
BstV2I GAAGAC 3 cut(s) 264, 543, 2192
BstX2I RGATCY 4 cut(s) 1183, 1285, 1471, 2251
BstXI CCANNNNNNTGG 1 cut(s) 1365
BstYI RGATCY 4 cut(s) 1183, 1285, 1471, 2251
BsuRI GGCC 2 cut(s) 112, 1125
BtsCI GGATG 7 cut(s) 189, 638, 1027, 1105, 1374, 1794, 2085
BtsI GCAGTG 3 cut(s) 582, 1074, 1545
BtsIMutI CAGTG 6 cut(s) 406, 582, 697, 1074, 1545, 2227
Cac8I GCNNGC 2 cut(s) 638, 1558
CciI TCATGA 2 cut(s) 1429, 2275
Cfr9I CCCGGG 1 cut(s) 316
CseI GACGC 1 cut(s) 2299
Csp6I GTAC 5 cut(s) 455, 510, 1208, 1265, 2173
CviQI GTAC 5 cut(s) 455, 510, 1208, 1265, 2173
DdeI CTNAG 3 cut(s) 267, 541, 1920
DraI TTTAAA 1 cut(s) 2143
EaeI YGGCCR 2 cut(s) 110, 1123
Eam1104I CTCTTC 6 cut(s) 904, 910, 916, 1341, 1874, 2208
EarI CTCTTC 6 cut(s) 904, 910, 916, 1341, 1874, 2208
Ecl136II GAGCTC 1 cut(s) 1374
Eco130I CCWWGG 4 cut(s) 1094, 1358, 1476, 2194
Eco24I GRGCYC 3 cut(s) 323, 1358, 1376
Eco31I GGTCTC 1 cut(s) 1143
Eco53kI GAGCTC 1 cut(s) 1374
Eco72I CACGTG 1 cut(s) 1517
Eco88I CYCGRG 1 cut(s) 316
EcoICRI GAGCTC 1 cut(s) 1374
EcoRI GAATTC 1 cut(s) 2240
EcoT14I CCWWGG 4 cut(s) 1094, 1358, 1476, 2194
EcoT22I ATGCAT 2 cut(s) 1576, 1932
EcoT38I GRGCYC 3 cut(s) 323, 1358, 1376
ErhI CCWWGG 4 cut(s) 1094, 1358, 1476, 2194
FaqI GGGAC 1 cut(s) 726
FauI CCCGC 1 cut(s) 629
FbaI TGATCA 2 cut(s) 1048, 1753
FblI GTMKAC 1 cut(s) 2017
Fnu4HI GCNGC 5 cut(s) 41, 395, 1175, 1985, 2158
FokI GGATG 7 cut(s) 176, 645, 1034, 1112, 1381, 1781, 2092
FriOI GRGCYC 3 cut(s) 323, 1358, 1376
Fsp4HI GCNGC 5 cut(s) 41, 395, 1175, 1985, 2158
FspBI CTAG 3 cut(s) 993, 1377, 1557
GluI GCNGC 5 cut(s) 41, 395, 1175, 1985, 2158
GsuI CTGGAG 1 cut(s) 1510
HaeIII GGCC 2 cut(s) 112, 1125
HapII CCGG 2 cut(s) 317, 2245
HgaI GACGC 1 cut(s) 2299
HindIII AAGCTT 1 cut(s) 791
HinfI GANTC 5 cut(s) 149, 271, 1090, 1738, 2182
HpaII CCGG 2 cut(s) 317, 2245
HphI GGTGA 3 cut(s) 305, 848, 1459
Hpy166II GTNNAC 1 cut(s) 2018
Hpy188I TCNGA 7 cut(s) 96, 148, 270, 1249, 1342, 1888, 2256
Hpy8I GTNNAC 1 cut(s) 2018
HpyAV CCTTC 7 cut(s) 369, 752, 857, 886, 1024, 1278, 1299
HpyCH4III ACNGT 2 cut(s) 401, 1165
HpyCH4IV ACGT 2 cut(s) 457, 1516
HpyF3I CTNAG 3 cut(s) 267, 541, 1920
HpySE526I ACGT 2 cut(s) 457, 1516
Kpn2I TCCGGA 1 cut(s) 2244
Ksp22I TGATCA 2 cut(s) 1048, 1753
LmnI GCTCC 3 cut(s) 472, 738, 1978
Lsp1109I GCAGC 4 cut(s) 27, 381, 1186, 1971
LweI GCATC 6 cut(s) 623, 1561, 1657, 1917, 1939, 2169
MaeI CTAG 3 cut(s) 993, 1377, 1557
MaeII ACGT 2 cut(s) 457, 1516
MaeIII GTNAC 5 cut(s) 241, 1159, 1510, 1533, 1781
MfeI CAATTG 2 cut(s) 1085, 1178
MflI RGATCY 4 cut(s) 1183, 1285, 1471, 2251
MhlI GDGCHC 4 cut(s) 323, 858, 1358, 1376
MlsI TGGCCA 2 cut(s) 112, 1125
MluNI TGGCCA 2 cut(s) 112, 1125
MlyI GAGTC 1 cut(s) 1099
MmeI TCCRAC 4 cut(s) 30, 997, 1277, 2012
Mox20I TGGCCA 2 cut(s) 112, 1125
Mph1103I ATGCAT 2 cut(s) 1576, 1932
MroI TCCGGA 1 cut(s) 2244
MroXI GAANNNNTTC 3 cut(s) 126, 300, 1454
MscI TGGCCA 2 cut(s) 112, 1125
MslI CAYNNNNRTG 1 cut(s) 981
Msp20I TGGCCA 2 cut(s) 112, 1125
MspA1I CMGCKG 1 cut(s) 2286
MspI CCGG 2 cut(s) 317, 2245
MspR9I CCNGG 2 cut(s) 317, 318
MunI CAATTG 2 cut(s) 1085, 1178
Mva1269I GAATGC 2 cut(s) 1454, 1507
NciI CCSGG 2 cut(s) 317, 318
NheI GCTAGC 1 cut(s) 1556
NlaIV GGNNCC 5 cut(s) 139, 740, 1185, 1287, 2043
NmuCI GTSAC 2 cut(s) 1510, 1781
NsiI ATGCAT 2 cut(s) 1576, 1932
NspI RCATGY 1 cut(s) 1241
PagI TCATGA 2 cut(s) 1429, 2275
PctI GAATGC 2 cut(s) 1454, 1507
PdmI GAANNNNTTC 3 cut(s) 126, 300, 1454
PfeI GAWTC 4 cut(s) 149, 271, 1738, 2182
PflMI CCANNNNNTGG 1 cut(s) 692
PkrI GCNGC 5 cut(s) 42, 396, 1176, 1986, 2159
PleI GAGTC 1 cut(s) 1098
PmaCI CACGTG 1 cut(s) 1517
PmlI CACGTG 1 cut(s) 1517
PpsI GAGTC 1 cut(s) 1098
Ppu21I YACGTR 1 cut(s) 1517
PshBI ATTAAT 1 cut(s) 1421
Psp124BI GAGCTC 1 cut(s) 1376
PspCI CACGTG 1 cut(s) 1517
PspN4I GGNNCC 5 cut(s) 139, 740, 1185, 1287, 2043
PstI CTGCAG 3 cut(s) 1159, 1264, 1552
PsuI RGATCY 4 cut(s) 1183, 1285, 1471, 2251
PvuII CAGCTG 1 cut(s) 2286
RsaI GTAC 5 cut(s) 456, 511, 1209, 1266, 2174
RsaNI GTAC 5 cut(s) 455, 510, 1208, 1265, 2173
RseI CAYNNNNRTG 1 cut(s) 981
SacI GAGCTC 1 cut(s) 1376
SatI GCNGC 5 cut(s) 41, 395, 1175, 1985, 2158
SchI GAGTC 1 cut(s) 1099
ScrFI CCNGG 2 cut(s) 317, 318
SduI GDGCHC 4 cut(s) 323, 858, 1358, 1376
SfaNI GCATC 6 cut(s) 623, 1561, 1657, 1917, 1939, 2169
SfcI CTRYAG 3 cut(s) 1155, 1260, 1548
SmaI CCCGGG 1 cut(s) 318
SmiMI CAYNNNNRTG 1 cut(s) 981
SmlI CTYRAG 1 cut(s) 2120
SmoI CTYRAG 1 cut(s) 2120
SsiI CCGC 4 cut(s) 61, 636, 2129, 2157
SspI AATATT 2 cut(s) 530, 787
SspMI CTAG 3 cut(s) 993, 1377, 1557
SstI GAGCTC 1 cut(s) 1376
StyD4I CCNGG 2 cut(s) 315, 316
StyI CCWWGG 4 cut(s) 1094, 1358, 1476, 2194
TaaI ACNGT 2 cut(s) 401, 1165
TaiI ACGT 2 cut(s) 460, 1519
TaqI TCGA 4 cut(s) 169, 873, 2097, 2259
TatI WGTACW 1 cut(s) 2172
TauI GCSGC 1 cut(s) 2160
TfiI GAWTC 4 cut(s) 149, 271, 1738, 2182
TscAI CASTG 6 cut(s) 406, 582, 697, 1081, 1552, 2227
TseFI GTSAC 2 cut(s) 1510, 1781
TseI GCWGC 4 cut(s) 40, 394, 1174, 1984
Tsp45I GTSAC 2 cut(s) 1510, 1781
TspGWI ACGGA 1 cut(s) 269
TspMI CCCGGG 1 cut(s) 316
TspRI CASTG 6 cut(s) 406, 582, 697, 1081, 1552, 2227
Van91I CCANNNNNTGG 1 cut(s) 692
VspI ATTAAT 1 cut(s) 1421
XapI RAATTY 4 cut(s) 24, 617, 1057, 2240
XceI RCATGY 1 cut(s) 1241
XmaI CCCGGG 1 cut(s) 316
XmiI GTMKAC 1 cut(s) 2017
XmnI GAANNNNTTC 3 cut(s) 126, 300, 1454
XspI CTAG 3 cut(s) 993, 1377, 1557
Zsp2I ATGCAT 2 cut(s) 1576, 1932
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.