Rroxscaffold_7G00201870

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005898
Physical Location & Seq
Reverse (-)
49688591 .. 49693002
4412 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201870.1

Sequence Viewer

Length: 1815 bp
ATGGAGCTATTTGTCTCATTTCTGTTTGCTCAACCAGATACTACCTGGGTTCTAATGAAATATTGTGAAGACTTAGACAACCTTTCAAAGTATTCATGGGCAGAGGCAGTGGGAAAGTTCCTAAACAAATCTTTGAAAGCCCAGAGCAAATTTGAAATTTATGGATGCGGGCTTCTCATACCATTTTGGTTTTGTGAGAAAACAAAACTTACACAACCAATCAGTGGGAGGGAGGTAGTTGAGGGAAATACACCATCCCTAATCAAATGGAGCCTTCCAGAGCTGAACGCCAAAATGCAACAAATAGCCATTTGCAATATTAAGCTTTTGTTCAAGGAGAAAGATGGGGTTAAAGGAGAAACAAAAGGTGAAAATGATATACAAGAGCACGAGGAAGGAGAAGTCGATCAAGATAAGCTAAAGAAGGTGGAGAATAAGGGAAGAGGAAGAGGATTAAGCAAACAATTACGAGAAGAAGTGGAGGAAAGAAGAAACCTCCAACACAACTATGAATTATCTAATGTGAAGAACAACATGGAAGATATGGATGGAAAGAAGGAGTTGATTAAAAGCCCCTCTACTGCAATTCAATTGAGTCCAAGGGATGAGATCGAGGTATCTCAAATTGGCCATGAAATGAGGTCTCCACCAAAAGGAACTGCAGTAACAGTTAGAAAGCAGCAATTGGATCCAGATTTTGTGTGTGATGTAGTACCTAAAAATAAGAAAGCGAAAAAGCAACATGCTCTATCTGATCCAACTCCTGCAATACCTTCAAGGTCAATTCAGGATCCTGCTGGCAAGAAAGATCAACCTATAATAATAATTGAGGACAATTCTGTTTCAGAAGAAGAGGAGAGCCCAAGGAAATGGATGAGCTCTAGAAAAACATGCTTCCGTTTTGAAAGATATGAGGTATTCAAATTAATGGATGATGAACATCAGCAAAAGGTGAAAGCATTCTGGAATATGGCAGATCCCAAGGAACTATTCTGGAGCGGGAAGAATGCAAGTGTCACACGTGAAGATGTGGGAAAGTTACTAAAAGACACTGCAGTTGCTAGCAATCTCATTGATGCATTTATGGAGTTATTGGAACAACAACAACAAAATTGTGTCAAAAAATCAACATACATATCAACTTTGTGCTGGAATTATTTACCAATACAAGATGCACAAAAGAAAGGCAGGAAAGGAAAGAAAGATCAAGTGCGAGATGAGGCTCGTGATGAAATGGGATTGAATCAATTAGTTTTTGATAAGCTATTGAGGAGTGTGGCAAAAAGTGACTATGTATTCATCCCAGTAATATCAAAGTTCCACTATTCTCTCCTCATCTTAAACAAAAATGAAAAAAAATGGATACATTACAACCCTTTGAGGAAGAGATCGGAACATCATATTGATCCATGCTATGAGGTTGCTAAGCAGATGCATCAAACGATACAGAAATGGTTGCGTATAACCCAAAAAGAAGCTCCAAAAATGCTGCTGAAAGAAACAAAAAGGAAGATGACAGGCAGACAGCAAGAAAGTTGGACAGAGGTGCCACTTAATGAAGATGAAAAAAGATCGCTAACTTGGATGGTGGATCACAATATCGACTTCAAATTGGACAATGATCTCAATTGTCCGCAACAGGATTTTAAATCATTGGATTGCGGCATATTTATTATGTACTACATGAATCAACTTTCCCAAGGTCTTCGAGTTGAAGAAGAGATCAGTGATTGCAGAATGTGGGAATTCCGGAAAGATCTGATCGAGCGTTTTGTGGATCATGAAAACAGCTGGACGCAGAACTCAACCACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

604

Amino Acids

70.59

Weight (kDa)

7.51

Isoelectric Point (pI)

47.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 356 - 585 1.4e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1546
AccB7I CCANNNNNTGG 1 cut(s) 224
AccBSI CCGCTC 1 cut(s) 999
AccIII TCCGGA 1 cut(s) 1749
AciI CCGC 4 cut(s) 168, 999, 1634, 1662
AclWI GGATC 9 cut(s) 683, 696, 749, 785, 798, 971, 1400, 1599, 1785
AcoI YGGCCR 1 cut(s) 628
AcsI RAATTY 3 cut(s) 149, 156, 1745
AcvI CACGTG 1 cut(s) 1022
AfaI GTAC 2 cut(s) 714, 1679
AfiI CCNNNNNNNGG 2 cut(s) 224, 653
AflIII ACRYGT 1 cut(s) 1019
AjnI CCWGG 1 cut(s) 44
AjuI GAANNNNNNNTTGG 2 cut(s) 974, 1006
AluBI AGCT 8 cut(s) 7, 283, 325, 418, 879, 1264, 1478, 1791
AluI AGCT 8 cut(s) 7, 283, 325, 418, 879, 1264, 1478, 1791
Alw21I GWGCWC 2 cut(s) 390, 881
Alw26I GTCTC 2 cut(s) 19, 648
AlwI GGATC 9 cut(s) 683, 696, 749, 785, 798, 971, 1400, 1599, 1785
Aor13HI TCCGGA 1 cut(s) 1749
AoxI GGCC 1 cut(s) 628
ApeKI GCWGC 2 cut(s) 679, 1489
ApoI RAATTY 3 cut(s) 149, 156, 1745
AseI ATTAAT 1 cut(s) 926
Asp700I GAANNNNTTC 1 cut(s) 959
AsuHPI GGTGA 2 cut(s) 380, 964
AsuNHI GCTAGC 1 cut(s) 1061
BalI TGGCCA 1 cut(s) 630
BamHI GGATCC 2 cut(s) 688, 790
BanI GGYRCC 1 cut(s) 1546
BanII GRGCYC 2 cut(s) 863, 881
BauI CACGAG 2 cut(s) 389, 1224
BbrPI CACGTG 1 cut(s) 1022
BbsI GAAGAC 2 cut(s) 75, 1697
Bbv12I GWGCWC 2 cut(s) 390, 881
BbvI GCAGC 2 cut(s) 691, 1476
BccI CCATC 4 cut(s) 262, 338, 542, 1579
BciT130I CCWGG 1 cut(s) 46
BciVI GTATCC 1 cut(s) 1356
BcoDI GTCTC 2 cut(s) 19, 648
BfaI CTAG 2 cut(s) 882, 1062
BfmI CTRYAG 2 cut(s) 660, 1053
BfuI GTATCC 1 cut(s) 1356
BglII AGATCT 1 cut(s) 1756
BisI GCNGC 3 cut(s) 680, 1490, 1663
BlpI GCTNAGC 1 cut(s) 1425
BlsI GCNGC 3 cut(s) 681, 1491, 1664
Bme1390I CCNGG 1 cut(s) 46
BmiI GGNNCC 4 cut(s) 272, 690, 792, 1548
BmrFI CCNGG 1 cut(s) 46
BmrI ACTGGG 1 cut(s) 1298
BmsI GCATC 5 cut(s) 155, 1066, 1162, 1422, 1444
BmtI GCTAGC 1 cut(s) 1065
BmuI ACTGGG 1 cut(s) 1298
BpiI GAAGAC 2 cut(s) 75, 1697
BpmI CTGGAG 1 cut(s) 1015
Bpu1102I GCTNAGC 1 cut(s) 1425
BsaAI YACGTR 1 cut(s) 1022
BsaBI GATNNNNATC 1 cut(s) 939
BsaI GGTCTC 1 cut(s) 648
BsaJI CCNNGG 5 cut(s) 45, 599, 863, 981, 1699
BsaWI WCCGGW 1 cut(s) 1749
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 653
Bse1I ACTGG 1 cut(s) 1304
Bse8I GATNNNNATC 1 cut(s) 939
BseAI TCCGGA 1 cut(s) 1749
BseBI CCWGG 1 cut(s) 46
BseDI CCNNGG 5 cut(s) 45, 599, 863, 981, 1699
BseGI GGATG 8 cut(s) 170, 254, 553, 610, 879, 937, 1299, 1590
BseJI GATNNNNATC 1 cut(s) 939
BseLI CCNNNNNNNGG 2 cut(s) 224, 653
BseNI ACTGG 1 cut(s) 1304
BseRI GAGGAG 3 cut(s) 869, 1285, 1322
BseXI GCAGC 2 cut(s) 691, 1476
BshFI GGCC 1 cut(s) 630
BshNI GGYRCC 1 cut(s) 1546
BsiHKAI GWGCWC 2 cut(s) 390, 881
BsiSI CCGG 1 cut(s) 1750
BslI CCNNNNNNNGG 2 cut(s) 224, 653
BsmAI GTCTC 2 cut(s) 19, 648
BsmI GAATGC 2 cut(s) 959, 1012
BsnI GGCC 1 cut(s) 630
Bso31I GGTCTC 1 cut(s) 648
Bsp1286I GDGCHC 3 cut(s) 390, 863, 881
Bsp13I TCCGGA 1 cut(s) 1749
Bsp1720I GCTNAGC 1 cut(s) 1425
BspACI CCGC 4 cut(s) 168, 999, 1634, 1662
BspANI GGCC 1 cut(s) 630
BspEI TCCGGA 1 cut(s) 1749
BspHI TCATGA 1 cut(s) 1780
BspLI GGNNCC 4 cut(s) 272, 690, 792, 1548
BspMAI CTGCAG 2 cut(s) 664, 1057
BspOI GCTAGC 1 cut(s) 1065
BspPI GGATC 9 cut(s) 683, 696, 749, 785, 798, 971, 1400, 1599, 1785
BspT107I GGYRCC 1 cut(s) 1546
BspTNI GGTCTC 1 cut(s) 648
BsrBI CCGCTC 1 cut(s) 999
BsrI ACTGG 1 cut(s) 1304
BssECI CCNNGG 5 cut(s) 45, 599, 863, 981, 1699
BssSI CACGAG 2 cut(s) 389, 1224
BssT1I CCWWGG 4 cut(s) 599, 863, 981, 1699
Bst2BI CACGAG 2 cut(s) 389, 1224
Bst2UI CCWGG 1 cut(s) 46
Bst4CI ACNGT 1 cut(s) 670
Bst6I CTCTTC 5 cut(s) 436, 442, 846, 1379, 1713
BstBAI YACGTR 1 cut(s) 1022
BstC8I GCNNGC 3 cut(s) 170, 799, 1063
BstDEI CTNAG 2 cut(s) 73, 1425
BstF5I GGATG 8 cut(s) 170, 254, 553, 610, 879, 937, 1299, 1590
BstMAI GTCTC 2 cut(s) 19, 648
BstNI CCWGG 1 cut(s) 46
BstNSI RCATGY 2 cut(s) 746, 894
BstSCI CCNGG 1 cut(s) 44
BstSFI CTRYAG 2 cut(s) 660, 1053
BstV1I GCAGC 2 cut(s) 691, 1476
BstV2I GAAGAC 2 cut(s) 75, 1697
BstX2I RGATCY 4 cut(s) 688, 790, 976, 1756
BstXI CCANNNNNNTGG 1 cut(s) 870
BstYI RGATCY 4 cut(s) 688, 790, 976, 1756
BsuI GTATCC 1 cut(s) 1356
BsuRI GGCC 1 cut(s) 630
BtsCI GGATG 8 cut(s) 170, 254, 553, 610, 879, 937, 1299, 1590
BtsI GCAGTG 2 cut(s) 114, 1050
BtsIMutI CAGTG 4 cut(s) 114, 229, 1050, 1732
Cac8I GCNNGC 3 cut(s) 170, 799, 1063
CciI TCATGA 1 cut(s) 1780
CseI GACGC 1 cut(s) 1804
Csp6I GTAC 2 cut(s) 713, 1678
CviAII CATG 9 cut(s) 96, 535, 632, 743, 891, 1410, 1684, 1781, 1812
CviQI GTAC 2 cut(s) 713, 1678
DdeI CTNAG 2 cut(s) 73, 1425
DraI TTTAAA 1 cut(s) 1648
EaeI YGGCCR 1 cut(s) 628
Eam1104I CTCTTC 5 cut(s) 436, 442, 846, 1379, 1713
EarI CTCTTC 5 cut(s) 436, 442, 846, 1379, 1713
Ecl136II GAGCTC 1 cut(s) 879
Eco130I CCWWGG 4 cut(s) 599, 863, 981, 1699
Eco24I GRGCYC 2 cut(s) 863, 881
Eco31I GGTCTC 1 cut(s) 648
Eco53kI GAGCTC 1 cut(s) 879
Eco72I CACGTG 1 cut(s) 1022
EcoICRI GAGCTC 1 cut(s) 879
EcoRI GAATTC 1 cut(s) 1745
EcoRII CCWGG 1 cut(s) 44
EcoT14I CCWWGG 4 cut(s) 599, 863, 981, 1699
EcoT22I ATGCAT 2 cut(s) 1081, 1437
EcoT38I GRGCYC 2 cut(s) 863, 881
ErhI CCWWGG 4 cut(s) 599, 863, 981, 1699
FaeI CATG 9 cut(s) 99, 538, 635, 746, 894, 1413, 1687, 1784, 1815
FatI CATG 9 cut(s) 95, 534, 631, 742, 890, 1409, 1683, 1780, 1811
FauI CCCGC 2 cut(s) 161, 992
Fnu4HI GCNGC 3 cut(s) 680, 1490, 1663
FokI GGATG 8 cut(s) 177, 241, 560, 617, 886, 944, 1286, 1597
FriOI GRGCYC 2 cut(s) 863, 881
Fsp4HI GCNGC 3 cut(s) 680, 1490, 1663
FspBI CTAG 2 cut(s) 882, 1062
GluI GCNGC 3 cut(s) 680, 1490, 1663
GsuI CTGGAG 1 cut(s) 1015
HaeIII GGCC 1 cut(s) 630
HapII CCGG 1 cut(s) 1750
HgaI GACGC 1 cut(s) 1804
Hin1II CATG 9 cut(s) 99, 538, 635, 746, 894, 1413, 1687, 1784, 1815
HindIII AAGCTT 1 cut(s) 323
HinfI GANTC 3 cut(s) 595, 1243, 1687
HpaII CCGG 1 cut(s) 1750
HphI GGTGA 2 cut(s) 380, 964
Hpy188I TCNGA 4 cut(s) 754, 847, 1393, 1761
HpyAV CCTTC 5 cut(s) 284, 389, 418, 550, 783
HpyCH4III ACNGT 1 cut(s) 670
HpyCH4IV ACGT 1 cut(s) 1021
HpyF3I CTNAG 2 cut(s) 73, 1425
HpySE526I ACGT 1 cut(s) 1021
Hsp92II CATG 9 cut(s) 99, 538, 635, 746, 894, 1413, 1687, 1784, 1815
Kpn2I TCCGGA 1 cut(s) 1749
LmnI GCTCC 4 cut(s) 4, 270, 996, 1483
Lsp1109I GCAGC 2 cut(s) 691, 1476
LweI GCATC 5 cut(s) 155, 1066, 1162, 1422, 1444
MaeI CTAG 2 cut(s) 882, 1062
MaeII ACGT 1 cut(s) 1021
MaeIII GTNAC 4 cut(s) 664, 1015, 1038, 1286
MbiI CCGCTC 1 cut(s) 999
MfeI CAATTG 3 cut(s) 590, 683, 1627
MflI RGATCY 4 cut(s) 688, 790, 976, 1756
MhlI GDGCHC 3 cut(s) 390, 863, 881
MlsI TGGCCA 1 cut(s) 630
MluNI TGGCCA 1 cut(s) 630
MlyI GAGTC 1 cut(s) 604
MmeI TCCRAC 3 cut(s) 523, 782, 1517
Mox20I TGGCCA 1 cut(s) 630
Mph1103I ATGCAT 2 cut(s) 1081, 1437
MroI TCCGGA 1 cut(s) 1749
MroXI GAANNNNTTC 1 cut(s) 959
MscI TGGCCA 1 cut(s) 630
MseI TTAA 8 cut(s) 321, 351, 455, 567, 926, 1340, 1554, 1647
MslI CAYNNNNRTG 1 cut(s) 507
Msp20I TGGCCA 1 cut(s) 630
MspA1I CMGCKG 1 cut(s) 1791
MspI CCGG 1 cut(s) 1750
MspR9I CCNGG 1 cut(s) 46
MunI CAATTG 3 cut(s) 590, 683, 1627
Mva1269I GAATGC 2 cut(s) 959, 1012
MvaI CCWGG 1 cut(s) 46
NheI GCTAGC 1 cut(s) 1061
NlaIII CATG 9 cut(s) 99, 538, 635, 746, 894, 1413, 1687, 1784, 1815
NlaIV GGNNCC 4 cut(s) 272, 690, 792, 1548
NmuCI GTSAC 2 cut(s) 1015, 1286
NsiI ATGCAT 2 cut(s) 1081, 1437
NspI RCATGY 2 cut(s) 746, 894
PagI TCATGA 1 cut(s) 1780
PctI GAATGC 2 cut(s) 959, 1012
PdmI GAANNNNTTC 1 cut(s) 959
PfeI GAWTC 2 cut(s) 1243, 1687
PflMI CCANNNNNTGG 1 cut(s) 224
PkrI GCNGC 3 cut(s) 681, 1491, 1664
PleI GAGTC 1 cut(s) 603
PmaCI CACGTG 1 cut(s) 1022
PmlI CACGTG 1 cut(s) 1022
PpsI GAGTC 1 cut(s) 603
Ppu21I YACGTR 1 cut(s) 1022
PshBI ATTAAT 1 cut(s) 926
Psp124BI GAGCTC 1 cut(s) 881
Psp6I CCWGG 1 cut(s) 44
PspCI CACGTG 1 cut(s) 1022
PspGI CCWGG 1 cut(s) 44
PspN4I GGNNCC 4 cut(s) 272, 690, 792, 1548
PstI CTGCAG 2 cut(s) 664, 1057
PsuI RGATCY 4 cut(s) 688, 790, 976, 1756
PvuII CAGCTG 1 cut(s) 1791
RsaI GTAC 2 cut(s) 714, 1679
RsaNI GTAC 2 cut(s) 713, 1678
RseI CAYNNNNRTG 1 cut(s) 507
SacI GAGCTC 1 cut(s) 881
SaqAI TTAA 8 cut(s) 321, 351, 455, 567, 926, 1340, 1554, 1647
SatI GCNGC 3 cut(s) 680, 1490, 1663
SchI GAGTC 1 cut(s) 604
ScrFI CCNGG 1 cut(s) 46
SduI GDGCHC 3 cut(s) 390, 863, 881
SfaNI GCATC 5 cut(s) 155, 1066, 1162, 1422, 1444
SfcI CTRYAG 2 cut(s) 660, 1053
SmiMI CAYNNNNRTG 1 cut(s) 507
SsiI CCGC 4 cut(s) 168, 999, 1634, 1662
SspI AATATT 2 cut(s) 62, 319
SspMI CTAG 2 cut(s) 882, 1062
SstI GAGCTC 1 cut(s) 881
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 4 cut(s) 599, 863, 981, 1699
TaaI ACNGT 1 cut(s) 670
TaiI ACGT 1 cut(s) 1024
TaqI TCGA 5 cut(s) 405, 612, 1602, 1708, 1764
TatI WGTACW 1 cut(s) 1677
TauI GCSGC 1 cut(s) 1665
TfiI GAWTC 2 cut(s) 1243, 1687
Tru1I TTAA 8 cut(s) 321, 351, 455, 567, 926, 1340, 1554, 1647
Tru9I TTAA 8 cut(s) 321, 351, 455, 567, 926, 1340, 1554, 1647
TscAI CASTG 4 cut(s) 114, 229, 1057, 1732
TseFI GTSAC 2 cut(s) 1015, 1286
TseI GCWGC 2 cut(s) 679, 1489
Tsp45I GTSAC 2 cut(s) 1015, 1286
TspGWI ACGGA 1 cut(s) 887
TspRI CASTG 4 cut(s) 114, 229, 1057, 1732
Van91I CCANNNNNTGG 1 cut(s) 224
VspI ATTAAT 1 cut(s) 926
XapI RAATTY 3 cut(s) 149, 156, 1745
XbaI TCTAGA 1 cut(s) 881
XceI RCATGY 2 cut(s) 746, 894
XcmI CCANNNNNNNNNTGG 1 cut(s) 42
XmnI GAANNNNTTC 1 cut(s) 959
XspI CTAG 2 cut(s) 882, 1062
Zsp2I ATGCAT 2 cut(s) 1081, 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.