Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0005898

Physical Location & Seq

Genomic Coordinates Forward (+)

8677954 .. 8679333

Gene Structure 1380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g09802.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAGATCAATAAAACTGATCAGCTGAACTTTCAAAGTCCCTCTGTTGCAATTCTACCCAGTCCAAGGGATGAAATTGAGGTATTTCAAATTGGGCATGAAATGAGGTCTCCACGAAAAGGAACTACAGTAACCGTTAGAAAGAAGCAGCTGGATCCAGATTATGTGTGTGATGCAGTGCCTAACAATAAAAAAGCAAAAAATCAACATGCTCTATCTGATCCAACTCGTGCAGTACCTTCAAGGTCAATTCAGGTTCCTGCCGGCAAGAAAGATGAACCCATAGTAATAATTGAGGACAGTTCTGCTTCAGTAGAAGAGGAGAGCCCTAGGAAAAGGAAACGCTCTAGGAAAGAATCCTTCCATCTTGAAAGGCATGAGGTCTTCAAATTAATGGATGATGAGCATCAGCAAAAAGTGAAAACTTTCTGGAATATGGCAGGTCCTAGGGAACTATTTTGGAGCCGAAAAAATGCAAGTGTCGCACATGAAGACGTGGAAAAGTTAATAAAAGATACTGCAGTTGCTAGCAATCTCATTGATGCATTTATGGAGCTATTGGAACAACAACAGAATAGTGTAAAACAATCAACATACGTATCAACTTTGTACTGGAATTACGTATCAATAGAAGATGCACGAAAGCAAGGCAAGAAAGGAAAGATAGATCAAGTGCGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

228

Amino Acids

26.12

Weight (kDa)

8.81

Isoelectric Point (pI)

58.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005898)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g09801 FvH4_2g09801 FvH4_2g09802 FvH4_2g10140 FvH4_2g10140 FvH4_2g10140
rosa_chinensis	RchiOBHm_Chr6g0266141 RchiOBHm_Chr6g0266151
rosa_laevigata	RLG00000014112 RLG00000014113
rosa_multiflora	Rmu_sc0004324.1_g000010 Rmu_sc0012594.1_g000003
rosa_roxburghii	Rroxscaffold_174G00435240 Rroxscaffold_174G00435320 Rroxscaffold_2G00113790 Rroxscaffold_7G00201870 Rroxscaffold_7G00201900
rosa_rugosa	Rorug06G0024300
rosa_samantha	Rh6AG144900 Rh6AG145000 Rh6BG145600 Rh6BG145700 Rh6CG142000 Rh6CG142100 Rh6DG130000 Rh6DG130100
rosa_wichuraiana	Rw6G012510 Rw6G012520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	431
AclWI	GGATC	3 cut(s)	149, 162, 215
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	2 cut(s)	237, 611
AfiI	CCNNNNNNNGG	2 cut(s)	66, 119
AgsI	TTSAA	5 cut(s)	35, 89, 243, 371, 388
AjiI	CACGTC	1 cut(s)	496
AluBI	AGCT	3 cut(s)	25, 151, 556
AluI	AGCT	3 cut(s)	25, 151, 556
Alw26I	GTCTC	1 cut(s)	114
AlwI	GGATC	3 cut(s)	149, 162, 215
ApeKI	GCWGC	1 cut(s)	148
AseI	ATTAAT	1 cut(s)	392
Asp700I	GAANNNNTTC	1 cut(s)	425
AspA2I	CCTAGG	2 cut(s)	329, 446
AspS9I	GGNCC	1 cut(s)	443
AsuNHI	GCTAGC	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	443
AvrII	CCTAGG	2 cut(s)	329, 446
BaeI	ACNNNNGTAYC	4 cut(s)	507, 540, 582, 615
BamHI	GGATCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	329
BauI	CACGAG	1 cut(s)	228
BbsI	GAAGAC	2 cut(s)	376, 498
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	372
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	1 cut(s)	114
BfaI	CTAG	4 cut(s)	330, 348, 447, 528
BfmI	CTRYAG	2 cut(s)	126, 519
BfuAI	ACCTGC	1 cut(s)	431
BisI	GCNGC	1 cut(s)	149
BlnI	CCTAGG	2 cut(s)	329, 446
BlsI	GCNGC	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	156, 258, 464
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	4 cut(s)	163, 415, 532, 625
BmtI	GCTAGC	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	2 cut(s)	376, 498
BsaAI	YACGTR	2 cut(s)	598, 622
BsaBI	GATNNNNATC	1 cut(s)	405
BsaI	GGTCTC	1 cut(s)	114
BsaJI	CCNNGG	3 cut(s)	65, 329, 446
Bsc4I	CCNNNNNNNGG	2 cut(s)	66, 119
Bse118I	RCCGGY	1 cut(s)	263
Bse1I	ACTGG	2 cut(s)	60, 617
Bse8I	GATNNNNATC	1 cut(s)	405
BseDI	CCNNGG	3 cut(s)	65, 329, 446
BseGI	GGATG	2 cut(s)	76, 403
BseJI	GATNNNNATC	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	66, 119
BseNI	ACTGG	2 cut(s)	60, 617
BseRI	GAGGAG	1 cut(s)	335
BseXI	GCAGC	1 cut(s)	160
BsgI	GTGCAG	1 cut(s)	252
BsiSI	CCGG	1 cut(s)	264
BslFI	GGGAC	1 cut(s)	24
BslI	CCNNNNNNNGG	2 cut(s)	66, 119
BsmAI	GTCTC	1 cut(s)	114
BsmFI	GGGAC	1 cut(s)	24
Bso31I	GGTCTC	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	329
Bsp143I	GATC	5 cut(s)	6, 19, 154, 220, 667
BspLI	GGNNCC	3 cut(s)	156, 258, 464
BspMAI	CTGCAG	1 cut(s)	523
BspMI	ACCTGC	1 cut(s)	431
BspOI	GCTAGC	1 cut(s)	531
BspPI	GGATC	3 cut(s)	149, 162, 215
BspTNI	GGTCTC	1 cut(s)	114
BsrFI	RCCGGY	1 cut(s)	263
BsrI	ACTGG	2 cut(s)	60, 617
BssAI	RCCGGY	1 cut(s)	263
BssECI	CCNNGG	3 cut(s)	65, 329, 446
BssMI	GATC	5 cut(s)	6, 19, 154, 220, 667
BssSI	CACGAG	1 cut(s)	228
BssT1I	CCWWGG	3 cut(s)	65, 329, 446
Bst2BI	CACGAG	1 cut(s)	228
Bst4CI	ACNGT	3 cut(s)	130, 136, 302
Bst6I	CTCTTC	1 cut(s)	312
BstBAI	YACGTR	2 cut(s)	598, 622
BstC8I	GCNNGC	2 cut(s)	265, 529
BstF5I	GGATG	2 cut(s)	76, 403
BstKTI	GATC	5 cut(s)	9, 22, 157, 223, 670
BstMAI	GTCTC	1 cut(s)	114
BstMBI	GATC	5 cut(s)	6, 19, 154, 220, 667
BstMWI	GCNNNNNNNGC	1 cut(s)	482
BstNSI	RCATGY	1 cut(s)	212
BstSFI	CTRYAG	2 cut(s)	126, 519
BstSNI	TACGTA	2 cut(s)	598, 622
BstV1I	GCAGC	1 cut(s)	160
BstV2I	GAAGAC	2 cut(s)	376, 498
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	76, 403
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
BveI	ACCTGC	1 cut(s)	431
Cac8I	GCNNGC	2 cut(s)	265, 529
Cfr10I	RCCGGY	1 cut(s)	263
Cfr13I	GGNCC	1 cut(s)	443
Csp6I	GTAC	2 cut(s)	236, 610
CviAII	CATG	4 cut(s)	98, 209, 377, 488
CviJI	RGCY	5 cut(s)	25, 151, 327, 465, 556
CviKI_1	RGCY	5 cut(s)	25, 151, 327, 465, 556
CviQI	GTAC	2 cut(s)	236, 610
DpnI	GATC	5 cut(s)	8, 21, 156, 222, 669
DpnII	GATC	5 cut(s)	6, 19, 154, 220, 667
Eam1104I	CTCTTC	1 cut(s)	312
EarI	CTCTTC	1 cut(s)	312
Eco105I	TACGTA	2 cut(s)	598, 622
Eco130I	CCWWGG	3 cut(s)	65, 329, 446
Eco24I	GRGCYC	1 cut(s)	329
Eco31I	GGTCTC	1 cut(s)	114
Eco47I	GGWCC	1 cut(s)	443
Eco57I	CTGAAG	1 cut(s)	294
EcoO109I	RGGNCCY	1 cut(s)	443
EcoT14I	CCWWGG	3 cut(s)	65, 329, 446
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	1 cut(s)	329
ErhI	CCWWGG	3 cut(s)	65, 329, 446
FaeI	CATG	4 cut(s)	101, 212, 380, 491
FaiI	YATR	9 cut(s)	99, 165, 210, 284, 378, 437, 489, 551, 595
FaqI	GGGAC	1 cut(s)	24
FatI	CATG	4 cut(s)	97, 208, 376, 487
FbaI	TGATCA	1 cut(s)	19
Fnu4HI	GCNGC	1 cut(s)	149
FokI	GGATG	2 cut(s)	83, 410
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	149
FspBI	CTAG	4 cut(s)	330, 348, 447, 528
GluI	GCNGC	1 cut(s)	149
HapII	CCGG	1 cut(s)	264
Hin1II	CATG	4 cut(s)	101, 212, 380, 491
HinfI	GANTC	1 cut(s)	356
HpaII	CCGG	1 cut(s)	264
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	3 cut(s)	158, 368, 430
HpyAV	CCTTC	2 cut(s)	249, 370
HpyCH4III	ACNGT	3 cut(s)	130, 136, 302
HpyCH4IV	ACGT	3 cut(s)	495, 597, 621
HpyCH4V	TGCA	7 cut(s)	50, 176, 233, 476, 521, 545, 638
HpyF10VI	GCNNNNNNNGC	1 cut(s)	482
HpySE526I	ACGT	3 cut(s)	495, 597, 621
Hsp92II	CATG	4 cut(s)	101, 212, 380, 491
KroI	GCCGGC	1 cut(s)	263
KroNI	GCCGGC	1 cut(s)	265
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	6, 19, 154, 220, 667
LmnI	GCTCC	2 cut(s)	462, 553
LpnPI	CCDG	9 cut(s)	73, 137, 171, 239, 273, 277, 415, 426, 598
Lsp1109I	GCAGC	1 cut(s)	160
LweI	GCATC	4 cut(s)	163, 415, 532, 625
MaeI	CTAG	4 cut(s)	330, 348, 447, 528
MaeII	ACGT	3 cut(s)	495, 597, 621
MaeIII	GTNAC	1 cut(s)	130
MalI	GATC	5 cut(s)	8, 21, 156, 222, 669
MboI	GATC	5 cut(s)	6, 19, 154, 220, 667
MboII	GAAGA	4 cut(s)	329, 376, 503, 644
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	329
MluCI	AATT	7 cut(s)	51, 75, 90, 249, 291, 389, 616
MmeI	TCCRAC	1 cut(s)	248
MnlI	CCTC	6 cut(s)	52, 73, 99, 289, 313, 373
Mph1103I	ATGCAT	1 cut(s)	547
MroNI	GCCGGC	1 cut(s)	263
MroXI	GAANNNNTTC	1 cut(s)	425
MseI	TTAA	2 cut(s)	392, 506
MspA1I	CMGCKG	2 cut(s)	25, 151
MspI	CCGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	1 cut(s)	482
NaeI	GCCGGC	1 cut(s)	265
NdeII	GATC	5 cut(s)	6, 19, 154, 220, 667
NgoMIV	GCCGGC	1 cut(s)	263
NheI	GCTAGC	1 cut(s)	527
NlaIII	CATG	4 cut(s)	101, 212, 380, 491
NlaIV	GGNNCC	3 cut(s)	156, 258, 464
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	212
PdiI	GCCGGC	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	425
PfeI	GAWTC	1 cut(s)	356
PkrI	GCNGC	1 cut(s)	150
Ppu21I	YACGTR	2 cut(s)	598, 622
PpuMI	RGGWCCY	1 cut(s)	443
PshBI	ATTAAT	1 cut(s)	392
Psp5II	RGGWCCY	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	156, 258, 464
PspPI	GGNCC	1 cut(s)	443
PspPPI	RGGWCCY	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	523
PsuI	RGATCY	1 cut(s)	154
PvuII	CAGCTG	2 cut(s)	25, 151
RsaI	GTAC	2 cut(s)	237, 611
RsaNI	GTAC	2 cut(s)	236, 610
SaqAI	TTAA	2 cut(s)	392, 506
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	5 cut(s)	6, 19, 154, 220, 667
Sau96I	GGNCC	1 cut(s)	443
SduI	GDGCHC	1 cut(s)	329
SfaNI	GCATC	4 cut(s)	163, 415, 532, 625
SfcI	CTRYAG	2 cut(s)	126, 519
SinI	GGWCC	1 cut(s)	443
SnaBI	TACGTA	2 cut(s)	598, 622
Sse9I	AATT	7 cut(s)	51, 75, 90, 249, 291, 389, 616
SspMI	CTAG	4 cut(s)	330, 348, 447, 528
StyI	CCWWGG	3 cut(s)	65, 329, 446
TaaI	ACNGT	3 cut(s)	130, 136, 302
TaiI	ACGT	3 cut(s)	498, 600, 624
TasI	AATT	7 cut(s)	51, 75, 90, 249, 291, 389, 616
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	1 cut(s)	356
Tru1I	TTAA	2 cut(s)	392, 506
Tru9I	TTAA	2 cut(s)	392, 506
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	4 cut(s)	87, 114, 291, 504
TspRI	CASTG	1 cut(s)	183
VpaK11BI	GGWCC	1 cut(s)	443
VspI	ATTAAT	1 cut(s)	392
XceI	RCATGY	1 cut(s)	212
XmaJI	CCTAGG	2 cut(s)	329, 446
XmnI	GAANNNNTTC	1 cut(s)	425
XspI	CTAG	4 cut(s)	330, 348, 447, 528
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.