Rroxscaffold_7G00201900

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0005898
Physical Location & Seq
Reverse (-)
49718281 .. 49720591
2311 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00201900.1

Sequence Viewer

Length: 1251 bp
ATGGCACCATATTGTCGAATTCGTTGTAGTGTGCTGCCAATGTTGGAAACAATGCAGCTACTTAAGGAAAGCCACTTGGAGTTGCTTCAGAAGACTCCATTTTGGCCATTGTTAGAAGCATTTCACAATGGCACCATTTCAGAATTACAATGCAAGGATTGTCGAACTCCCATACTAAAGATCATCAAAACTTTTAACCCAGAGACCGCGACCTTTCACTTTGGTACTAGAGCCATATCTATAAACACAGAAGACATCTCTCAGATTCTTGGACTGCCACAACATGGTGACAGAGTCCAATTCGGTCATCTGGTTTATCGTAAATCATATGAGTCGGACTTTACTGAGAGACATTTTAAGGGAATAGACAGGGTGAACCACAAACTGCTACATGGTCTACTATTAAAGTTACTGAATGGGAAAGAACAAACGGATATAGAAGATGTTGTACGTCTCACCCTAATGGAGTTGTTCATCACATTCCTGTTCACCCGATCACATCTTCAATTGGTTCTAGTGAAGTATTGTGATGAATTTGACAAACTTTCAAGGTATTCATGGGCAGCAGCAGTGGGAGATTTCCTAAACAAATCTTTGAAAGCCCAGAGCAAAGTTGAAATTGAGGGATGCGCGCTTCTCATTCCACTTTGGTTGTGTGAGAAAACAAATATTACACAACCAATCAGTGGGAGGGAGATCATCGAGGGCAACACACCATCCCTAATCAGATGGAGTCTTCCGGAACTGAACATCAAAATGCAAGAAATAACCATTTGCGAAATTGAGCTAAAGAAGAAGGACACGAAGCAAAAGGGAAGAGAATTATACCAACCGTTACAAAAAGAAATAGTGGAAAGAAGAAAGGTACAGAAGAACGACTATGAATTAAACGTGAAGAAGAACTTCAAAGATAAACTTAAAGCAGGAGTTGATGGAGACATGGAGTTGATTGAGAAAGATCAGCTAGATCCTCAAATCCCCTGCACTGCAATTCAATTGAGTCCAAGGGATGACAATGAGGTGCCGCAAGTTGAGCATCAAATGAGACTTCCTATGGAAGGAACTGGAGTGAAAGTTAGAAAGCAGCAACTGGATCCAGATTTTGTGTGCAATGTAGTGCCTAAAAGGAGAAAGGCTGTAATACCCCTTTTTTTTTATTATATGTTATTTTTGAAACAAAGTAAAATGGGTTCCGGGTTTTGGGCAAGGAAATGTGGGGAGGATATCATGATTGCACCAGACCACAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

416

Amino Acids

48.27

Weight (kDa)

8.61

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 57 - 271 7.6e-16 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 4, 131, 1021
AccB7I CCANNNNNTGG 2 cut(s) 284, 686
AccI GTMKAC 1 cut(s) 397
AccII CGCG 2 cut(s) 209, 632
AccIII TCCGGA 1 cut(s) 739
AciI CCGC 2 cut(s) 207, 1025
AclWI GGATC 3 cut(s) 962, 1088, 1101
AcoI YGGCCR 1 cut(s) 104
AcsI RAATTY 2 cut(s) 18, 533
AcuI CTGAAG 1 cut(s) 71
AfaI GTAC 3 cut(s) 226, 450, 867
AfiI CCNNNNNNNGG 4 cut(s) 284, 686, 1058, 1200
AflII CTTAAG 1 cut(s) 62
AgsI TTSAA 7 cut(s) 506, 549, 598, 617, 907, 995, 1174
AluBI AGCT 3 cut(s) 58, 787, 964
AluI AGCT 3 cut(s) 58, 787, 964
Alw26I GTCTC 5 cut(s) 197, 343, 458, 930, 1039
AlwI GGATC 3 cut(s) 962, 1088, 1101
AlwNI CAGNNNCTG 1 cut(s) 1090
Aor13HI TCCGGA 1 cut(s) 739
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 5 cut(s) 34, 55, 563, 566, 1084
ApoI RAATTY 2 cut(s) 18, 533
Asp700I GAANNNNTTC 2 cut(s) 120, 902
AspLEI GCGC 2 cut(s) 632, 634
AsuC2I CCSGG 1 cut(s) 1195
AsuHPI GGTGA 4 cut(s) 299, 385, 448, 481
BalI TGGCCA 1 cut(s) 106
BamHI GGATCC 1 cut(s) 1093
BanI GGYRCC 3 cut(s) 4, 131, 1021
BarI GAAGNNNNNNTAC 2 cut(s) 432, 464
BbsI GAAGAC 3 cut(s) 98, 258, 728
BbvI GCAGC 5 cut(s) 21, 67, 575, 578, 1096
BccI CCATC 3 cut(s) 723, 724, 926
BcnI CCSGG 1 cut(s) 1195
BcoDI GTCTC 5 cut(s) 197, 343, 458, 930, 1039
BfaI CTAG 3 cut(s) 228, 515, 965
BfrI CTTAAG 1 cut(s) 62
BisI GCNGC 6 cut(s) 35, 56, 564, 567, 1025, 1085
BlsI GCNGC 6 cut(s) 36, 57, 565, 568, 1026, 1086
Bme1390I CCNGG 1 cut(s) 1195
BmiI GGNNCC 5 cut(s) 6, 133, 1023, 1095, 1192
BmrFI CCNGG 1 cut(s) 1195
BmsI GCATC 2 cut(s) 617, 1045
BpiI GAAGAC 3 cut(s) 98, 258, 728
BpmI CTGGAG 1 cut(s) 1086
BpuMI CCSGG 1 cut(s) 1195
BsaI GGTCTC 1 cut(s) 197
BsaJI CCNNGG 1 cut(s) 1004
BsaWI WCCGGW 1 cut(s) 739
BsaXI ACNNNNNCTCC 2 cut(s) 1059, 1089
Bsc4I CCNNNNNNNGG 4 cut(s) 284, 686, 1058, 1200
Bse1I ACTGG 2 cut(s) 1069, 1095
Bse3DI GCAATG 1 cut(s) 1117
BseAI TCCGGA 1 cut(s) 739
BseDI CCNNGG 1 cut(s) 1004
BseGI GGATG 3 cut(s) 632, 716, 1015
BseLI CCNNNNNNNGG 4 cut(s) 284, 686, 1058, 1200
BseMI GCAATG 1 cut(s) 1117
BseMII CTCAG 2 cut(s) 275, 336
BseNI ACTGG 2 cut(s) 1069, 1095
BsePI GCGCGC 1 cut(s) 630
BseXI GCAGC 5 cut(s) 21, 67, 575, 578, 1096
BsgI GTGCAG 1 cut(s) 967
Bsh1236I CGCG 2 cut(s) 209, 632
BshFI GGCC 1 cut(s) 106
BshNI GGYRCC 3 cut(s) 4, 131, 1021
BsiSI CCGG 2 cut(s) 740, 1194
BslI CCNNNNNNNGG 4 cut(s) 284, 686, 1058, 1200
BsmAI GTCTC 5 cut(s) 197, 343, 458, 930, 1039
BsmBI CGTCTC 1 cut(s) 458
BsnI GGCC 1 cut(s) 106
Bso31I GGTCTC 1 cut(s) 197
Bsp13I TCCGGA 1 cut(s) 739
Bsp143I GATC 6 cut(s) 180, 494, 696, 958, 967, 1093
BspACI CCGC 2 cut(s) 207, 1025
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 2 cut(s) 274, 337
BspEI TCCGGA 1 cut(s) 739
BspFNI CGCG 2 cut(s) 209, 632
BspHI TCATGA 1 cut(s) 1227
BspLI GGNNCC 5 cut(s) 6, 133, 1023, 1095, 1192
BspPI GGATC 3 cut(s) 962, 1088, 1101
BspT107I GGYRCC 3 cut(s) 4, 131, 1021
BspTI CTTAAG 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 197
BsrDI GCAATG 1 cut(s) 1117
BsrI ACTGG 2 cut(s) 1069, 1095
BssECI CCNNGG 1 cut(s) 1004
BssHII GCGCGC 1 cut(s) 630
BssMI GATC 6 cut(s) 180, 494, 696, 958, 967, 1093
BssT1I CCWWGG 1 cut(s) 1004
Bst4CI ACNGT 1 cut(s) 834
Bst6I CTCTTC 1 cut(s) 811
BstAFI CTTAAG 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 632
BstDEI CTNAG 2 cut(s) 261, 345
BstENI CCTNNNNNAGG 1 cut(s) 1056
BstF5I GGATG 3 cut(s) 632, 716, 1015
BstFNI CGCG 2 cut(s) 209, 632
BstHHI GCGC 2 cut(s) 632, 634
BstKTI GATC 6 cut(s) 183, 497, 699, 961, 970, 1096
BstMAI GTCTC 5 cut(s) 197, 343, 458, 930, 1039
BstMBI GATC 6 cut(s) 180, 494, 696, 958, 967, 1093
BstMWI GCNNNNNNNGC 1 cut(s) 1033
BstSCI CCNGG 1 cut(s) 1193
BstUI CGCG 2 cut(s) 209, 632
BstV1I GCAGC 5 cut(s) 21, 67, 575, 578, 1096
BstV2I GAAGAC 3 cut(s) 98, 258, 728
BstX2I RGATCY 2 cut(s) 967, 1093
BstYI RGATCY 2 cut(s) 967, 1093
BsuRI GGCC 1 cut(s) 106
BtsCI GGATG 3 cut(s) 632, 716, 1015
BtsI GCAGTG 2 cut(s) 576, 984
BtsIMutI CAGTG 3 cut(s) 576, 691, 984
Cac8I GCNNGC 1 cut(s) 632
CaiI CAGNNNCTG 1 cut(s) 1090
CciI TCATGA 1 cut(s) 1227
CfoI GCGC 2 cut(s) 632, 634
Csp6I GTAC 3 cut(s) 225, 449, 866
CspCI CAANNNNNGTGG 2 cut(s) 633, 668
CviAII CATG 5 cut(s) 284, 392, 558, 940, 1228
CviJI RGCY 8 cut(s) 58, 72, 106, 233, 602, 787, 964, 1136
CviKI_1 RGCY 8 cut(s) 58, 72, 106, 233, 602, 787, 964, 1136
CviQI GTAC 3 cut(s) 225, 449, 866
DdeI CTNAG 2 cut(s) 261, 345
DpnI GATC 6 cut(s) 182, 496, 698, 960, 969, 1095
DpnII GATC 6 cut(s) 180, 494, 696, 958, 967, 1093
EaeI YGGCCR 1 cut(s) 104
Eam1104I CTCTTC 1 cut(s) 811
EarI CTCTTC 1 cut(s) 811
Eco130I CCWWGG 1 cut(s) 1004
Eco31I GGTCTC 1 cut(s) 197
Eco32I GATATC 1 cut(s) 1225
Eco57I CTGAAG 1 cut(s) 71
EcoNI CCTNNNNNAGG 1 cut(s) 1056
EcoRI GAATTC 1 cut(s) 18
EcoRV GATATC 1 cut(s) 1225
EcoT14I CCWWGG 1 cut(s) 1004
ErhI CCWWGG 1 cut(s) 1004
Esp3I CGTCTC 1 cut(s) 458
FaeI CATG 5 cut(s) 287, 395, 561, 943, 1231
FalI AAGNNNNNCTT 4 cut(s) 887, 919, 900, 932
FatI CATG 5 cut(s) 283, 391, 557, 939, 1227
FauNDI CATATG 1 cut(s) 328
FblI GTMKAC 1 cut(s) 397
Fnu4HI GCNGC 6 cut(s) 35, 56, 564, 567, 1025, 1085
FokI GGATG 3 cut(s) 639, 703, 1022
Fsp4HI GCNGC 6 cut(s) 35, 56, 564, 567, 1025, 1085
FspBI CTAG 3 cut(s) 228, 515, 965
GlaI GCGC 2 cut(s) 631, 633
GluI GCNGC 6 cut(s) 35, 56, 564, 567, 1025, 1085
GsuI CTGGAG 1 cut(s) 1086
HaeIII GGCC 1 cut(s) 106
HapII CCGG 2 cut(s) 740, 1194
HhaI GCGC 2 cut(s) 632, 634
Hin1II CATG 5 cut(s) 287, 395, 561, 943, 1231
Hin6I GCGC 2 cut(s) 630, 632
HinP1I GCGC 2 cut(s) 630, 632
HinfI GANTC 6 cut(s) 94, 265, 294, 332, 733, 1000
HpaII CCGG 2 cut(s) 740, 1194
HphI GGTGA 4 cut(s) 299, 385, 448, 481
Hpy166II GTNNAC 3 cut(s) 376, 398, 489
Hpy188I TCNGA 5 cut(s) 90, 142, 264, 337, 728
Hpy188III TCNNGA 3 cut(s) 740, 1097, 1228
Hpy8I GTNNAC 3 cut(s) 376, 398, 489
HpyAV CCTTC 2 cut(s) 790, 1052
HpyCH4III ACNGT 1 cut(s) 834
HpyCH4IV ACGT 2 cut(s) 451, 891
HpyCH4V TGCA 7 cut(s) 55, 153, 760, 984, 989, 1110, 1235
HpyF10VI GCNNNNNNNGC 1 cut(s) 1033
HpyF3I CTNAG 2 cut(s) 261, 345
HpySE526I ACGT 2 cut(s) 451, 891
Hsp92II CATG 5 cut(s) 287, 395, 561, 943, 1231
HspAI GCGC 2 cut(s) 630, 632
Kpn2I TCCGGA 1 cut(s) 739
Kzo9I GATC 6 cut(s) 180, 494, 696, 958, 967, 1093
Lsp1109I GCAGC 5 cut(s) 21, 67, 575, 578, 1096
LweI GCATC 2 cut(s) 617, 1045
MaeI CTAG 3 cut(s) 228, 515, 965
MaeII ACGT 2 cut(s) 451, 891
MaeIII GTNAC 3 cut(s) 287, 408, 834
MalI GATC 6 cut(s) 182, 496, 698, 960, 969, 1095
MboI GATC 6 cut(s) 180, 494, 696, 958, 967, 1093
MfeI CAATTG 2 cut(s) 506, 995
MflI RGATCY 2 cut(s) 967, 1093
MlsI TGGCCA 1 cut(s) 106
MluNI TGGCCA 1 cut(s) 106
MlyI GAGTC 5 cut(s) 88, 303, 341, 742, 1009
MmeI TCCRAC 2 cut(s) 24, 315
MnlI CCTC 6 cut(s) 616, 684, 697, 981, 1012, 1213
Mox20I TGGCCA 1 cut(s) 106
MroI TCCGGA 1 cut(s) 739
MroXI GAANNNNTTC 2 cut(s) 120, 902
MscI TGGCCA 1 cut(s) 106
MseI TTAA 6 cut(s) 63, 195, 357, 404, 887, 918
MslI CAYNNNNRTG 2 cut(s) 461, 755
Msp20I TGGCCA 1 cut(s) 106
MspCI CTTAAG 1 cut(s) 62
MspI CCGG 2 cut(s) 740, 1194
MspR9I CCNGG 1 cut(s) 1195
MunI CAATTG 2 cut(s) 506, 995
MvnI CGCG 2 cut(s) 209, 632
MwoI GCNNNNNNNGC 1 cut(s) 1033
NciI CCSGG 1 cut(s) 1195
NdeI CATATG 1 cut(s) 328
NdeII GATC 6 cut(s) 180, 494, 696, 958, 967, 1093
NlaIII CATG 5 cut(s) 287, 395, 561, 943, 1231
NlaIV GGNNCC 5 cut(s) 6, 133, 1023, 1095, 1192
NmuCI GTSAC 1 cut(s) 287
PagI TCATGA 1 cut(s) 1227
PauI GCGCGC 1 cut(s) 630
PdmI GAANNNNTTC 2 cut(s) 120, 902
PfeI GAWTC 1 cut(s) 265
PflFI GACNNNGTC 1 cut(s) 293
PflMI CCANNNNNTGG 2 cut(s) 284, 686
PkrI GCNGC 6 cut(s) 36, 57, 565, 568, 1026, 1086
PleI GAGTC 5 cut(s) 88, 302, 340, 741, 1008
PpsI GAGTC 5 cut(s) 88, 302, 340, 741, 1008
PspN4I GGNNCC 5 cut(s) 6, 133, 1023, 1095, 1192
PsrI GAACNNNNNNTAC 2 cut(s) 1174, 1206
PstNI CAGNNNCTG 1 cut(s) 1090
PsuI RGATCY 2 cut(s) 967, 1093
PsyI GACNNNGTC 1 cut(s) 293
PteI GCGCGC 1 cut(s) 630
RsaI GTAC 3 cut(s) 226, 450, 867
RsaNI GTAC 3 cut(s) 225, 449, 866
RseI CAYNNNNRTG 2 cut(s) 461, 755
SaqAI TTAA 6 cut(s) 63, 195, 357, 404, 887, 918
SatI GCNGC 6 cut(s) 35, 56, 564, 567, 1025, 1085
Sau3AI GATC 6 cut(s) 180, 494, 696, 958, 967, 1093
SchI GAGTC 5 cut(s) 88, 303, 341, 742, 1009
ScrFI CCNGG 1 cut(s) 1195
SetI ASST 9 cut(s) 60, 215, 454, 554, 789, 867, 894, 966, 1023
SfaNI GCATC 2 cut(s) 617, 1045
SmiMI CAYNNNNRTG 2 cut(s) 461, 755
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
SsiI CCGC 2 cut(s) 207, 1025
SspI AATATT 1 cut(s) 670
SspMI CTAG 3 cut(s) 228, 515, 965
StyD4I CCNGG 1 cut(s) 1193
StyI CCWWGG 1 cut(s) 1004
TaaI ACNGT 1 cut(s) 834
TaiI ACGT 2 cut(s) 454, 894
TaqI TCGA 3 cut(s) 16, 163, 702
TaqII GACCGA 1 cut(s) 293
TauI GCSGC 1 cut(s) 1027
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 6 cut(s) 63, 195, 357, 404, 887, 918
Tru9I TTAA 6 cut(s) 63, 195, 357, 404, 887, 918
TscAI CASTG 3 cut(s) 576, 691, 991
TseFI GTSAC 1 cut(s) 287
TseI GCWGC 5 cut(s) 34, 55, 563, 566, 1084
Tsp45I GTSAC 1 cut(s) 287
TspDTI ATGAA 4 cut(s) 463, 546, 546, 897
TspGWI ACGGA 1 cut(s) 446
TspRI CASTG 3 cut(s) 576, 691, 991
Tth111I GACNNNGTC 1 cut(s) 293
Van91I CCANNNNNTGG 2 cut(s) 284, 686
Vha464I CTTAAG 1 cut(s) 62
XagI CCTNNNNNAGG 1 cut(s) 1056
XapI RAATTY 2 cut(s) 18, 533
XmiI GTMKAC 1 cut(s) 397
XmnI GAANNNNTTC 2 cut(s) 120, 902
XspI CTAG 3 cut(s) 228, 515, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.