Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Forward (+)

9567577 .. 9571199

Gene Structure 3623 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g10920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 888 bp

ATGGCCACCGTGAGAGTGCTCGCCGTCTCGAACAGCTCGTGCTTGCTGTCGAAGACGACGTCGTTCTTGGCGAAGCAGGGGCCGTACAGGAACAGTCTCTGCTTCACCAAAAGAGGAGGAGCGGCGCCGTCATTGTCTCGGCGGTCCTTGACTTGCCGCGCTATCTACAACCCCGAGGTCCAGATCAAGGAGGAAGGCCTCCCTGAAACCCTTGACTACCGTGTCTTCTTCGTTGACCGCTCCGGCCAAAAGGTATCACCTTGGCATGACATACCTCTGCGCACCGGGGATGGTGCATTCAACTTTGTTGTTGAAATTCCGAAAGAATCAAGTGCAAAGATGGAGGTGGCTACTGATGAGCCTAACACTCCCATCAAGCAGGATACAAAGAAAGGCAAACTTCGTTACTACCCCTACAATATAAATTGGAATTATGGATTGCTTCCACAAACATGGGAAGACCCATCCCTTGCCAACTCTGAAGTGGACGGAGCATTTGGTGATAACGATCCAGTTGATGTTGTTGAGATTGGGGAAACTCGGAGAAAGGTTGGCGAGATTCTCAAAGTCAAACCCTTGGCTGCTTTAGCCATGATTGATGAAGGGGAACTTGACTGGAAAATTGTGGCAATTTCATTGGATGATCCAAAAGCTTCTCTGGTTAATGATATTGATGATGTCGAGAAGCATTTCCCGGGGACTCTTACTGCAATAAGAAACTGGTTTAGAGACTACAAGATTCCTGATGGAAAGCCTGCTAACAAGTTTGGTCTTGGAAACAAGCCAGCCAACAAGGATTATGCGCTTAAGGTCATAACCGAAACCAACGAATCATGGGCTAAACTCGTCAAGAGATCCATTCCTGCTGGAGAACTGTCCCTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

296

Amino Acids

32.82

Weight (kDa)

6.77

Isoelectric Point (pI)

37.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	102 - 279	3.3e-41	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	221
AatII	GACGTC	1 cut(s)	62
Acc16I	TGCGCA	1 cut(s)	281
AccB1I	GGYRCC	1 cut(s)	124
AccBSI	CCGCTC	2 cut(s)	122, 240
AccII	CGCG	1 cut(s)	159
AciI	CCGC	4 cut(s)	122, 142, 157, 238
AclWI	GGATC	3 cut(s)	503, 638, 849
AcoI	YGGCCR	2 cut(s)	3, 244
AcsI	RAATTY	1 cut(s)	315
AcuI	CTGAAG	1 cut(s)	501
AcyI	GRCGYC	2 cut(s)	59, 125
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	187
AflII	CTTAAG	1 cut(s)	806
AgsI	TTSAA	2 cut(s)	301, 314
AluBI	AGCT	2 cut(s)	36, 653
AluI	AGCT	2 cut(s)	36, 653
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	4 cut(s)	31, 101, 141, 723
AlwI	GGATC	3 cut(s)	503, 638, 849
AlwNI	CAGNNNCTG	1 cut(s)	99
Ama87I	CYCGRG	2 cut(s)	173, 694
AoxI	GGCC	4 cut(s)	3, 80, 196, 244
ApeKI	GCWGC	1 cut(s)	581
ApoI	RAATTY	1 cut(s)	315
ArsI	GACNNNNNNTTYG	4 cut(s)	44, 76, 479, 511
Asp700I	GAANNNNTTC	1 cut(s)	689
AspLEI	GCGC	4 cut(s)	127, 161, 282, 805
AspS9I	GGNCC	3 cut(s)	80, 144, 178
AsuC2I	CCSGG	3 cut(s)	286, 695, 696
AsuHPI	GGTGA	3 cut(s)	97, 249, 512
AvaI	CYCGRG	2 cut(s)	173, 694
AvaII	GGWCC	2 cut(s)	144, 178
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	124
BauI	CACGAG	1 cut(s)	37
BbsI	GAAGAC	3 cut(s)	59, 217, 465
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	5 cut(s)	284, 334, 380, 472, 740
BceAI	ACGGC	3 cut(s)	8, 67, 112
BciVI	GTATCC	1 cut(s)	376
BcnI	CCSGG	3 cut(s)	286, 695, 696
BcoDI	GTCTC	4 cut(s)	31, 101, 141, 723
BfoI	RGCGCY	1 cut(s)	128
BfrI	CTTAAG	1 cut(s)	806
BfuI	GTATCC	1 cut(s)	376
BisI	GCNGC	3 cut(s)	123, 157, 582
BlsI	GCNGC	3 cut(s)	124, 158, 583
Bme1390I	CCNGG	3 cut(s)	286, 695, 696
Bme18I	GGWCC	2 cut(s)	144, 178
BmeT110I	CYCGRG	2 cut(s)	173, 694
BmgT120I	GGNCC	3 cut(s)	80, 144, 178
BmiI	GGNNCC	2 cut(s)	81, 126
BmrFI	CCNGG	3 cut(s)	286, 695, 696
BpiI	GAAGAC	3 cut(s)	59, 217, 465
BpmI	CTGGAG	1 cut(s)	888
BpuMI	CCSGG	3 cut(s)	286, 695, 696
BsaBI	GATNNNNATC	1 cut(s)	507
BsaHI	GRCGYC	2 cut(s)	59, 125
BsaJI	CCNNGG	6 cut(s)	174, 260, 285, 576, 694, 695
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	3 cut(s)	512, 620, 725
Bse8I	GATNNNNATC	1 cut(s)	507
BseDI	CCNNGG	6 cut(s)	174, 260, 285, 576, 694, 695
BseGI	GGATG	3 cut(s)	295, 464, 646
BseJI	GATNNNNATC	1 cut(s)	507
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseNI	ACTGG	3 cut(s)	512, 620, 725
BseRI	GAGGAG	2 cut(s)	129, 132
BseXI	GCAGC	1 cut(s)	568
Bsh1236I	CGCG	1 cut(s)	159
BshFI	GGCC	4 cut(s)	5, 82, 198, 246
BshNI	GGYRCC	1 cut(s)	124
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	173, 694
BsiSI	CCGG	3 cut(s)	243, 285, 695
BslFI	GGGAC	2 cut(s)	712, 862
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmAI	GTCTC	4 cut(s)	31, 101, 141, 723
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	2 cut(s)	712, 862
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	4 cut(s)	5, 82, 198, 246
BsoBI	CYCGRG	2 cut(s)	173, 694
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	4 cut(s)	183, 508, 643, 854
BspACI	CCGC	4 cut(s)	122, 142, 157, 238
BspANI	GGCC	4 cut(s)	5, 82, 198, 246
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	81, 126
BspPI	GGATC	3 cut(s)	503, 638, 849
BspT107I	GGYRCC	1 cut(s)	124
BspTI	CTTAAG	1 cut(s)	806
BsrBI	CCGCTC	2 cut(s)	122, 240
BsrI	ACTGG	3 cut(s)	512, 620, 725
BssECI	CCNNGG	6 cut(s)	174, 260, 285, 576, 694, 695
BssMI	GATC	4 cut(s)	183, 508, 643, 854
BssNI	GRCGYC	2 cut(s)	59, 125
BssSI	CACGAG	1 cut(s)	37
BssT1I	CCWWGG	2 cut(s)	260, 576
Bst2BI	CACGAG	1 cut(s)	37
Bst4CI	ACNGT	4 cut(s)	10, 95, 221, 876
BstACI	GRCGYC	2 cut(s)	59, 125
BstAFI	CTTAAG	1 cut(s)	806
BstC8I	GCNNGC	4 cut(s)	21, 44, 756, 786
BstF5I	GGATG	3 cut(s)	295, 464, 646
BstFNI	CGCG	1 cut(s)	159
BstH2I	RGCGCY	1 cut(s)	128
BstHHI	GCGC	4 cut(s)	127, 161, 282, 805
BstKTI	GATC	4 cut(s)	186, 511, 646, 857
BstMAI	GTCTC	4 cut(s)	31, 101, 141, 723
BstMBI	GATC	4 cut(s)	183, 508, 643, 854
BstMWI	GCNNNNNNNGC	1 cut(s)	587
BstSCI	CCNGG	3 cut(s)	284, 693, 694
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	1 cut(s)	568
BstV2I	GAAGAC	3 cut(s)	59, 217, 465
BstX2I	RGATCY	1 cut(s)	854
BstXI	CCANNNNNNTGG	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	854
BsuI	GTATCC	1 cut(s)	376
BsuRI	GGCC	4 cut(s)	5, 82, 198, 246
BtsCI	GGATG	3 cut(s)	295, 464, 646
Cac8I	GCNNGC	4 cut(s)	21, 44, 756, 786
CaiI	CAGNNNCTG	1 cut(s)	99
CfoI	GCGC	4 cut(s)	127, 161, 282, 805
Cfr13I	GGNCC	3 cut(s)	80, 144, 178
Cfr9I	CCCGGG	1 cut(s)	694
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	4 cut(s)	266, 453, 592, 834
CviQI	GTAC	1 cut(s)	85
DinI	GGCGCC	1 cut(s)	126
DpnI	GATC	4 cut(s)	185, 510, 645, 856
DpnII	GATC	4 cut(s)	183, 508, 643, 854
DrdI	GACNNNNNNGTC	1 cut(s)	221
DseDI	GACNNNNNNGTC	1 cut(s)	221
EaeI	YGGCCR	2 cut(s)	3, 244
Eco130I	CCWWGG	2 cut(s)	260, 576
Eco147I	AGGCCT	1 cut(s)	198
Eco47I	GGWCC	2 cut(s)	144, 178
Eco57I	CTGAAG	1 cut(s)	501
Eco88I	CYCGRG	2 cut(s)	173, 694
EcoT14I	CCWWGG	2 cut(s)	260, 576
EgeI	GGCGCC	1 cut(s)	126
EheI	GGCGCC	1 cut(s)	126
ErhI	CCWWGG	2 cut(s)	260, 576
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	4 cut(s)	269, 456, 595, 837
FaiI	YATR	9 cut(s)	267, 272, 422, 435, 454, 593, 801, 815, 835
FalI	AAGNNNNNCTT	4 cut(s)	384, 416, 594, 626
FaqI	GGGAC	2 cut(s)	712, 862
FatI	CATG	4 cut(s)	265, 452, 591, 833
Fnu4HI	GCNGC	3 cut(s)	123, 157, 582
FokI	GGATG	3 cut(s)	302, 451, 653
Fsp4HI	GCNGC	3 cut(s)	123, 157, 582
FspI	TGCGCA	1 cut(s)	281
GlaI	GCGC	4 cut(s)	126, 160, 281, 804
GluI	GCNGC	3 cut(s)	123, 157, 582
GsuI	CTGGAG	1 cut(s)	888
HaeII	RGCGCY	1 cut(s)	128
HaeIII	GGCC	4 cut(s)	5, 82, 198, 246
HapII	CCGG	3 cut(s)	243, 285, 695
HhaI	GCGC	4 cut(s)	127, 161, 282, 805
Hin1I	GRCGYC	2 cut(s)	59, 125
Hin1II	CATG	4 cut(s)	269, 456, 595, 837
Hin6I	GCGC	4 cut(s)	125, 159, 280, 803
HinP1I	GCGC	4 cut(s)	125, 159, 280, 803
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	651
HinfI	GANTC	5 cut(s)	326, 559, 700, 739, 830
HpaII	CCGG	3 cut(s)	243, 285, 695
HphI	GGTGA	3 cut(s)	97, 249, 512
Hpy166II	GTNNAC	2 cut(s)	235, 487
Hpy188I	TCNGA	3 cut(s)	321, 481, 543
Hpy188III	TCNNGA	5 cut(s)	28, 181, 682, 743, 850
Hpy8I	GTNNAC	2 cut(s)	235, 487
Hpy99I	CGWCG	2 cut(s)	61, 64
HpyAV	CCTTC	2 cut(s)	188, 596
HpyCH4III	ACNGT	4 cut(s)	10, 95, 221, 876
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	3 cut(s)	296, 335, 710
HpyF10VI	GCNNNNNNNGC	1 cut(s)	587
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	2 cut(s)	59, 125
Hsp92II	CATG	4 cut(s)	269, 456, 595, 837
HspAI	GCGC	4 cut(s)	125, 159, 280, 803
KasI	GGCGCC	1 cut(s)	124
Kzo9I	GATC	4 cut(s)	183, 508, 643, 854
LmnI	GCTCC	3 cut(s)	119, 245, 491
Lsp1109I	GCAGC	1 cut(s)	568
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	4 cut(s)	185, 510, 645, 856
MbiI	CCGCTC	2 cut(s)	122, 240
MboI	GATC	4 cut(s)	183, 508, 643, 854
MboII	GAAGA	4 cut(s)	64, 217, 220, 470
MflI	RGATCY	1 cut(s)	854
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	315, 424, 430, 621, 630
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	125
MlyI	GAGTC	1 cut(s)	694
MnlI	CCTC	7 cut(s)	107, 110, 169, 184, 209, 285, 337
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	689
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	663, 807
MslI	CAYNNNNRTG	1 cut(s)	451
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	806
MspI	CCGG	3 cut(s)	243, 285, 695
MspR9I	CCNGG	3 cut(s)	286, 695, 696
Mva1269I	GAATGC	1 cut(s)	296
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	1 cut(s)	587
NarI	GGCGCC	1 cut(s)	125
NciI	CCSGG	3 cut(s)	286, 695, 696
NdeII	GATC	4 cut(s)	183, 508, 643, 854
NlaIII	CATG	4 cut(s)	269, 456, 595, 837
NlaIV	GGNNCC	2 cut(s)	81, 126
NmeAIII	GCCGAG	1 cut(s)	118
NsbI	TGCGCA	1 cut(s)	281
PceI	AGGCCT	1 cut(s)	198
PcsI	WCGNNNNNNNCGW	3 cut(s)	35, 56, 68
PctI	GAATGC	1 cut(s)	296
PdmI	GAANNNNTTC	1 cut(s)	689
PfeI	GAWTC	4 cut(s)	326, 559, 739, 830
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	124, 158, 583
PleI	GAGTC	1 cut(s)	694
PluTI	GGCGCC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	694
PspN4I	GGNNCC	2 cut(s)	81, 126
PspPI	GGNCC	3 cut(s)	80, 144, 178
PstNI	CAGNNNCTG	1 cut(s)	99
PsuI	RGATCY	1 cut(s)	854
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	451
SaqAI	TTAA	2 cut(s)	663, 807
SatI	GCNGC	3 cut(s)	123, 157, 582
Sau3AI	GATC	4 cut(s)	183, 508, 643, 854
Sau96I	GGNCC	3 cut(s)	80, 144, 178
SchI	GAGTC	1 cut(s)	694
ScrFI	CCNGG	3 cut(s)	286, 695, 696
SduI	GDGCHC	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	126
SinI	GGWCC	2 cut(s)	144, 178
SmaI	CCCGGG	1 cut(s)	696
SmiMI	CAYNNNNRTG	1 cut(s)	451
SmlI	CTYRAG	1 cut(s)	806
SmoI	CTYRAG	1 cut(s)	806
Sse9I	AATT	5 cut(s)	315, 424, 430, 621, 630
SseBI	AGGCCT	1 cut(s)	198
SsiI	CCGC	4 cut(s)	122, 142, 157, 238
SspDI	GGCGCC	1 cut(s)	124
StuI	AGGCCT	1 cut(s)	198
StyD4I	CCNGG	3 cut(s)	284, 693, 694
StyI	CCWWGG	2 cut(s)	260, 576
TaaI	ACNGT	4 cut(s)	10, 95, 221, 876
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	29, 50, 681
TasI	AATT	5 cut(s)	315, 424, 430, 621, 630
TauI	GCSGC	2 cut(s)	125, 159
TfiI	GAWTC	4 cut(s)	326, 559, 739, 830
Tru1I	TTAA	2 cut(s)	663, 807
Tru9I	TTAA	2 cut(s)	663, 807
TseI	GCWGC	1 cut(s)	581
TspDTI	ATGAA	2 cut(s)	615, 624
TspGWI	ACGGA	1 cut(s)	504
TspMI	CCCGGG	1 cut(s)	694
Tth111I	GACNNNGTC	1 cut(s)	58
Vha464I	CTTAAG	1 cut(s)	806
VpaK11BI	GGWCC	2 cut(s)	144, 178
XapI	RAATTY	1 cut(s)	315
XcmI	CCANNNNNNNNNTGG	1 cut(s)	481
XmaI	CCCGGG	1 cut(s)	694
XmnI	GAANNNNTTC	1 cut(s)	689
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.