Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Reverse (-)

8840602 .. 8844559

Gene Structure 3958 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1051000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGCCACCGCGAGAGTGCTGACCGCCGCCAATACTTCCTGCTTGATCTCCAAGACGACGTCGTTCCGCGCGAAGCAGAGTCCCTACAGCAATACCAGCCTTTGCTTCACCAGAAGAAGAGCAGCGTCGCTGTCGTCGTCGTCTTCTTCCAGGAGGCCCTTCAATTGCACGGCTATCTACAATCCCGATGTTCAGATCAAGGAGGAAGGCCAGCCCGAAACACTAGATTACCGCCTCTTCTTCGTCGACCGTTCCGGTCAAAAGGTTTCTCCTTGGCATGATATACCTTTGCAAGTGGGTGACGGTGTATTCAACTTTGTGGTTGAAATACCCAAAGAATCTAGTGCAAAGATGGAGGTTGCTACTGATGAGCCACACACCCCGATAAAGCAGGATACAAAGAAGGGAAAACTCCGTTACTATCCCTACAATATTAATTGGAATTATGGGTTGCTTCCACAAACATGGGAAGACCCATCTCTTGCTAACAATGAAGTTGAAGGAGCATTTGGGGATAATGATCCAGTTGATGTTGTTGAGATAGGCGATAGTCGAAGAAAGATTGGTGAGATTCTCAAAGTAAAGCCATTGGCTGCTTTAGCAATGATCGATGAAGGGGAACTTGACTGGAAAATTGTTGCAATTTCATTGGATGATCCAAGGGCTTCTCTCGTTAATGACATTGATGATGTTGAGAAGCATTTCCCGGGGACTCTCACTGCAATAAGGGACTGGTTTAGAGACTACAAGATACCTGATGGAAAGCCTGCTAACAAGTTTGGTCTTGGCAACAAAGCAGCTAACAAGGATTATGCTCTTAAGGTCATAACCGAAACCAATGAATCGTGGGCAAAGCTTGTCAAGAGATCAATTCCTGCTGGAGACCTCTCACTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

300

Amino Acids

33.33

Weight (kDa)

6.03

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	106 - 283	2e-41	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	3 cut(s)	11, 69, 71
AciI	CCGC	5 cut(s)	9, 24, 27, 67, 232
AclWI	GGATC	2 cut(s)	515, 650
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	59
AflII	CTTAAG	1 cut(s)	818
AgsI	TTSAA	4 cut(s)	163, 313, 326, 500
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AluBI	AGCT	2 cut(s)	800, 856
AluI	AGCT	2 cut(s)	800, 856
Alw26I	GTCTC	2 cut(s)	735, 876
AlwI	GGATC	2 cut(s)	515, 650
Ama87I	CYCGRG	1 cut(s)	706
AoxI	GGCC	3 cut(s)	3, 155, 208
ApeKI	GCWGC	3 cut(s)	122, 593, 797
AseI	ATTAAT	1 cut(s)	435
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	71
AspS9I	GGNCC	1 cut(s)	156
AsuC2I	CCSGG	2 cut(s)	707, 708
AsuHPI	GGTGA	3 cut(s)	100, 311, 578
AvaI	CYCGRG	1 cut(s)	706
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	135, 477
BbvI	GCAGC	3 cut(s)	134, 580, 809
BccI	CCATC	3 cut(s)	346, 484, 752
BceAI	ACGGC	1 cut(s)	186
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	388
BcnI	CCSGG	2 cut(s)	707, 708
BcoDI	GTCTC	2 cut(s)	735, 876
BfaI	CTAG	2 cut(s)	224, 342
BfmI	CTRYAG	1 cut(s)	85
BfrI	CTTAAG	1 cut(s)	818
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	4 cut(s)	27, 123, 594, 798
BlsI	GCNGC	4 cut(s)	28, 124, 595, 799
Bme1390I	CCNGG	3 cut(s)	151, 707, 708
BmeT110I	CYCGRG	1 cut(s)	706
BmgT120I	GGNCC	1 cut(s)	156
BmrFI	CCNGG	3 cut(s)	151, 707, 708
BpiI	GAAGAC	2 cut(s)	135, 477
BpmI	CTGGAG	1 cut(s)	900
BpuMI	CCSGG	2 cut(s)	707, 708
Bsa29I	ATCGAT	1 cut(s)	609
BsaBI	GATNNNNATC	1 cut(s)	519
BsaHI	GRCGYC	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	4 cut(s)	272, 659, 706, 707
BsaWI	WCCGGW	1 cut(s)	254
Bse1I	ACTGG	3 cut(s)	524, 632, 737
Bse3DI	GCAATG	1 cut(s)	609
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	151
BseCI	ATCGAT	1 cut(s)	609
BseDI	CCNNGG	4 cut(s)	272, 659, 706, 707
BseGI	GGATG	1 cut(s)	658
BseJI	GATNNNNATC	1 cut(s)	519
BseMI	GCAATG	1 cut(s)	609
BseNI	ACTGG	3 cut(s)	524, 632, 737
BseXI	GCAGC	3 cut(s)	134, 580, 809
Bsh1236I	CGCG	3 cut(s)	11, 69, 71
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	3 cut(s)	5, 157, 210
BshVI	ATCGAT	1 cut(s)	609
BsiEI	CGRYCG	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	706
BsiSI	CCGG	2 cut(s)	255, 707
BslFI	GGGAC	3 cut(s)	66, 724, 743
BsmAI	GTCTC	2 cut(s)	735, 876
BsmFI	GGGAC	3 cut(s)	66, 724, 743
BsnI	GGCC	3 cut(s)	5, 157, 210
Bso31I	GGTCTC	1 cut(s)	876
BsoBI	CYCGRG	1 cut(s)	706
Bsp143I	GATC	6 cut(s)	45, 195, 520, 606, 655, 866
BspACI	CCGC	5 cut(s)	9, 24, 27, 67, 232
BspANI	GGCC	3 cut(s)	5, 157, 210
BspDI	ATCGAT	1 cut(s)	609
BspFNI	CGCG	3 cut(s)	11, 69, 71
BspPI	GGATC	2 cut(s)	515, 650
BspQI	GCTCTTC	1 cut(s)	112
BspTI	CTTAAG	1 cut(s)	818
BspTNI	GGTCTC	1 cut(s)	876
BsrDI	GCAATG	1 cut(s)	609
BsrI	ACTGG	3 cut(s)	524, 632, 737
BssECI	CCNNGG	4 cut(s)	272, 659, 706, 707
BssMI	GATC	6 cut(s)	45, 195, 520, 606, 655, 866
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	2 cut(s)	272, 659
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	251, 305
Bst6I	CTCTTC	2 cut(s)	112, 242
BstACI	GRCGYC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	818
BstC8I	GCNNGC	2 cut(s)	212, 768
BstF5I	GGATG	1 cut(s)	658
BstFNI	CGCG	3 cut(s)	11, 69, 71
BstHHI	GCGC	1 cut(s)	71
BstKTI	GATC	6 cut(s)	48, 198, 523, 609, 658, 869
BstMAI	GTCTC	2 cut(s)	735, 876
BstMBI	GATC	6 cut(s)	45, 195, 520, 606, 655, 866
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 599
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	149, 705, 706
BstSFI	CTRYAG	1 cut(s)	85
BstUI	CGCG	3 cut(s)	11, 69, 71
BstV1I	GCAGC	3 cut(s)	134, 580, 809
BstV2I	GAAGAC	2 cut(s)	135, 477
BstXI	CCANNNNNNTGG	1 cut(s)	465
Bsu15I	ATCGAT	1 cut(s)	609
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	5, 157, 210
BsuTUI	ATCGAT	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	658
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	1 cut(s)	717
Cac8I	GCNNGC	2 cut(s)	212, 768
CfoI	GCGC	1 cut(s)	71
Cfr13I	GGNCC	1 cut(s)	156
Cfr9I	CCCGGG	1 cut(s)	706
ClaI	ATCGAT	1 cut(s)	609
CseI	GACGC	1 cut(s)	114
CviAII	CATG	2 cut(s)	278, 465
DpnI	GATC	6 cut(s)	47, 197, 522, 608, 657, 868
DpnII	GATC	6 cut(s)	45, 195, 520, 606, 655, 866
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	112, 242
EarI	CTCTTC	2 cut(s)	112, 242
Eco130I	CCWWGG	2 cut(s)	272, 659
Eco31I	GGTCTC	1 cut(s)	876
Eco88I	CYCGRG	1 cut(s)	706
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	272, 659
ErhI	CCWWGG	2 cut(s)	272, 659
FaeI	CATG	2 cut(s)	281, 468
FaiI	YATR	7 cut(s)	279, 284, 447, 466, 813, 827, 898
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	3 cut(s)	66, 724, 743
FatI	CATG	2 cut(s)	277, 464
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	4 cut(s)	27, 123, 594, 798
FokI	GGATG	1 cut(s)	665
Fsp4HI	GCNGC	4 cut(s)	27, 123, 594, 798
FspBI	CTAG	2 cut(s)	224, 342
GlaI	GCGC	1 cut(s)	70
GluI	GCNGC	4 cut(s)	27, 123, 594, 798
GsuI	CTGGAG	1 cut(s)	900
HaeIII	GGCC	3 cut(s)	5, 157, 210
HapII	CCGG	2 cut(s)	255, 707
HgaI	GACGC	1 cut(s)	114
HhaI	GCGC	1 cut(s)	71
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	281, 468
Hin6I	GCGC	1 cut(s)	69
HinP1I	GCGC	1 cut(s)	69
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	854
HinfI	GANTC	5 cut(s)	79, 338, 571, 712, 842
HpaII	CCGG	2 cut(s)	255, 707
HphI	GGTGA	3 cut(s)	100, 311, 578
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	1 cut(s)	195
Hpy188III	TCNNGA	2 cut(s)	185, 862
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	6 cut(s)	61, 64, 130, 139, 142, 248
HpyAV	CCTTC	5 cut(s)	169, 200, 397, 494, 608
HpyCH4III	ACNGT	2 cut(s)	251, 305
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	6 cut(s)	168, 292, 347, 641, 722, 896
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 599
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	281, 468
HspAI	GCGC	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	45, 195, 520, 606, 655, 866
LguI	GCTCTTC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	503
Lsp1109I	GCAGC	3 cut(s)	134, 580, 809
MaeI	CTAG	2 cut(s)	224, 342
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	299, 416
MalI	GATC	6 cut(s)	47, 197, 522, 608, 657, 868
MboI	GATC	6 cut(s)	45, 195, 520, 606, 655, 866
MboII	GAAGA	8 cut(s)	126, 129, 135, 138, 229, 232, 482, 567
MfeI	CAATTG	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	163, 436, 442, 633, 642, 870
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	88, 706
MnlI	CCTC	5 cut(s)	147, 196, 245, 349, 896
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	701
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	3 cut(s)	435, 675, 819
MslI	CAYNNNNRTG	1 cut(s)	463
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	818
MspI	CCGG	2 cut(s)	255, 707
MspR9I	CCNGG	3 cut(s)	151, 707, 708
MunI	CAATTG	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	3 cut(s)	11, 69, 71
MwoI	GCNNNNNNNGC	2 cut(s)	96, 599
NciI	CCSGG	2 cut(s)	707, 708
NdeII	GATC	6 cut(s)	45, 195, 520, 606, 655, 866
NlaIII	CATG	2 cut(s)	281, 468
NmuCI	GTSAC	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	112
PcsI	WCGNNNNNNNCGW	2 cut(s)	68, 134
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	3 cut(s)	338, 571, 842
PflFI	GACNNNGTC	1 cut(s)	58
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	4 cut(s)	28, 124, 595, 799
PleI	GAGTC	2 cut(s)	87, 706
PpsI	GAGTC	2 cut(s)	87, 706
PshBI	ATTAAT	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	156
PsyI	GACNNNGTC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	463
SalI	GTCGAC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	3 cut(s)	435, 675, 819
SatI	GCNGC	4 cut(s)	27, 123, 594, 798
Sau3AI	GATC	6 cut(s)	45, 195, 520, 606, 655, 866
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	2 cut(s)	88, 706
ScrFI	CCNGG	3 cut(s)	151, 707, 708
SetI	ASST	9 cut(s)	62, 267, 289, 360, 757, 802, 825, 858, 888
SfcI	CTRYAG	1 cut(s)	85
SmaI	CCCGGG	1 cut(s)	708
SmiMI	CAYNNNNRTG	1 cut(s)	463
SmlI	CTYRAG	1 cut(s)	818
SmoI	CTYRAG	1 cut(s)	818
Sse9I	AATT	6 cut(s)	163, 436, 442, 633, 642, 870
SsiI	CCGC	5 cut(s)	9, 24, 27, 67, 232
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	2 cut(s)	224, 342
StyD4I	CCNGG	3 cut(s)	149, 705, 706
StyI	CCWWGG	2 cut(s)	272, 659
TaaI	ACNGT	2 cut(s)	251, 305
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	246, 553, 609
TasI	AATT	6 cut(s)	163, 436, 442, 633, 642, 870
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	3 cut(s)	338, 571, 842
Tru1I	TTAA	3 cut(s)	435, 675, 819
Tru9I	TTAA	3 cut(s)	435, 675, 819
TscAI	CASTG	1 cut(s)	724
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	3 cut(s)	122, 593, 797
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	507, 627, 636, 855
TspGWI	ACGGA	1 cut(s)	404
TspMI	CCCGGG	1 cut(s)	706
TspRI	CASTG	1 cut(s)	724
Tth111I	GACNNNGTC	1 cut(s)	58
Vha464I	CTTAAG	1 cut(s)	818
VspI	ATTAAT	1 cut(s)	435
XmaI	CCCGGG	1 cut(s)	706
XmiI	GTMKAC	1 cut(s)	246
XmnI	GAANNNNTTC	1 cut(s)	701
XspI	CTAG	2 cut(s)	224, 342
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.