Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Reverse (-)

5053178 .. 5054788

Gene Structure 1611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g04310.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGCCACCGCGAGAGTGCTGACCGCCGCCAATACTTCCTGCTTGATCTCCAAGACGACATCGTTCCCCATGAAGCTGAGTCCCTACAGCACTACCAGCCTTTGCTTCACCAGAAGAAGAGCAGCGTCGCTGTCGTTGTCGTCTTCTTCCAGGAGGCCCTTCAATTGCACAGCTATCTACAATCCCGAGGTTCAGATCAAGGAGGAAGGCCAGCCCGAAACACTAGATTACCGCCTTTTCTTCGTCGACCGTTCCGGTCAAAAGGTTTCTCCTTGGCATGATATACCTTTGCAAGTGGGTGACGGTGCATTCAACTTTGTGGTTGAAATACCCAAAGAATCGAGTGCAAAGATGGAGGTTGCTACTGATGAGCCACACACCCCGATAAAGCAGGATACAAAGAAGGGAAAACTTCGTTACTATCCCTACAATATTAATTGGAATTATGGGTTGCTTCCACAAACATGGGAAGACCCATCTCTTGCTAACAATGAAGTTGAAGGAGCATTTGGGGATAATGATCCAGTTGATGTTGTTGAGATAGGCGATAGTCGGAGAAAGATTGGTGAGATTCTCAAAGTAAAGCCATTGGCTGCTTTAGCTATGATCGATGAAGGGGAACTTGACTGGAAAATTGTTGCAATTTCATTGGATCGATCCAAGGGCTTCTCTCGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

226

Amino Acids

25.17

Weight (kDa)

6.19

Isoelectric Point (pI)

50.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	246
AccII	CGCG	1 cut(s)	11
AciI	CCGC	4 cut(s)	9, 24, 27, 232
AclWI	GGATC	3 cut(s)	515, 651, 660
AcoI	YGGCCR	1 cut(s)	3
AgsI	TTSAA	4 cut(s)	163, 313, 326, 500
AjnI	CCWGG	1 cut(s)	149
AjuI	GAANNNNNNNTTGG	2 cut(s)	492, 524
AluBI	AGCT	3 cut(s)	76, 173, 602
AluI	AGCT	3 cut(s)	76, 173, 602
AlwI	GGATC	3 cut(s)	515, 651, 660
Ama87I	CYCGRG	1 cut(s)	185
AoxI	GGCC	3 cut(s)	3, 155, 208
ApeKI	GCWGC	2 cut(s)	122, 593
AseI	ATTAAT	1 cut(s)	435
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	3 cut(s)	100, 311, 578
AvaI	CYCGRG	1 cut(s)	185
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	135, 477
BbvI	GCAGC	2 cut(s)	134, 580
BccI	CCATC	2 cut(s)	346, 484
BciT130I	CCWGG	1 cut(s)	151
BciVI	GTATCC	1 cut(s)	388
BfaI	CTAG	1 cut(s)	224
BfmI	CTRYAG	1 cut(s)	85
BfuI	GTATCC	1 cut(s)	388
BisI	GCNGC	3 cut(s)	27, 123, 594
BlsI	GCNGC	3 cut(s)	28, 124, 595
Bme1390I	CCNGG	1 cut(s)	151
BmeT110I	CYCGRG	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	151
BpiI	GAAGAC	2 cut(s)	135, 477
Bsa29I	ATCGAT	2 cut(s)	609, 655
BsaBI	GATNNNNATC	1 cut(s)	519
BsaJI	CCNNGG	3 cut(s)	186, 272, 660
BsaWI	WCCGGW	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	524, 632
Bse8I	GATNNNNATC	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	151
BseCI	ATCGAT	2 cut(s)	609, 655
BseDI	CCNNGG	3 cut(s)	186, 272, 660
BseJI	GATNNNNATC	1 cut(s)	519
BseMII	CTCAG	1 cut(s)	68
BseNI	ACTGG	2 cut(s)	524, 632
BseXI	GCAGC	2 cut(s)	134, 580
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	250
BshFI	GGCC	3 cut(s)	5, 157, 210
BshVI	ATCGAT	2 cut(s)	609, 655
BsiEI	CGRYCG	1 cut(s)	250
BsiHKCI	CYCGRG	1 cut(s)	185
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	66
BsmFI	GGGAC	1 cut(s)	66
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	3 cut(s)	5, 157, 210
BsoBI	CYCGRG	1 cut(s)	185
Bsp143I	GATC	6 cut(s)	45, 195, 520, 606, 652, 656
BspACI	CCGC	4 cut(s)	9, 24, 27, 232
BspANI	GGCC	3 cut(s)	5, 157, 210
BspCNI	CTCAG	1 cut(s)	69
BspDI	ATCGAT	2 cut(s)	609, 655
BspFNI	CGCG	1 cut(s)	11
BspPI	GGATC	3 cut(s)	515, 651, 660
BspQI	GCTCTTC	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	524, 632
BssECI	CCNNGG	3 cut(s)	186, 272, 660
BssMI	GATC	6 cut(s)	45, 195, 520, 606, 652, 656
BssT1I	CCWWGG	2 cut(s)	272, 660
Bst2UI	CCWGG	1 cut(s)	151
Bst4CI	ACNGT	2 cut(s)	251, 305
Bst6I	CTCTTC	1 cut(s)	112
BstC8I	GCNNGC	1 cut(s)	212
BstDEI	CTNAG	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	11
BstKTI	GATC	6 cut(s)	48, 198, 523, 609, 655, 659
BstMBI	GATC	6 cut(s)	45, 195, 520, 606, 652, 656
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	96, 599
BstNI	CCWGG	1 cut(s)	151
BstSCI	CCNGG	1 cut(s)	149
BstSFI	CTRYAG	1 cut(s)	85
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	134, 580
BstV2I	GAAGAC	2 cut(s)	135, 477
BstXI	CCANNNNNNTGG	1 cut(s)	465
Bsu15I	ATCGAT	2 cut(s)	609, 655
BsuI	GTATCC	1 cut(s)	388
BsuRI	GGCC	3 cut(s)	5, 157, 210
BsuTUI	ATCGAT	2 cut(s)	609, 655
Cac8I	GCNNGC	1 cut(s)	212
Cfr13I	GGNCC	1 cut(s)	156
ClaI	ATCGAT	2 cut(s)	609, 655
CseI	GACGC	1 cut(s)	114
CviAII	CATG	3 cut(s)	70, 278, 465
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	6 cut(s)	47, 197, 522, 608, 654, 658
DpnII	GATC	6 cut(s)	45, 195, 520, 606, 652, 656
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Eco130I	CCWWGG	2 cut(s)	272, 660
Eco88I	CYCGRG	1 cut(s)	185
EcoO109I	RGGNCCY	1 cut(s)	156
EcoRII	CCWGG	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	272, 660
ErhI	CCWWGG	2 cut(s)	272, 660
FaeI	CATG	3 cut(s)	73, 281, 468
FaiI	YATR	6 cut(s)	71, 279, 284, 447, 466, 605
FalI	AAGNNNNNCTT	2 cut(s)	606, 638
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	3 cut(s)	69, 277, 464
FblI	GTMKAC	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	27, 123, 594
Fsp4HI	GCNGC	3 cut(s)	27, 123, 594
FspBI	CTAG	1 cut(s)	224
GluI	GCNGC	3 cut(s)	27, 123, 594
HaeIII	GGCC	3 cut(s)	5, 157, 210
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	114
Hin1II	CATG	3 cut(s)	73, 281, 468
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HinfI	GANTC	3 cut(s)	79, 338, 571
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	3 cut(s)	100, 311, 578
Hpy166II	GTNNAC	1 cut(s)	247
Hpy188I	TCNGA	2 cut(s)	195, 555
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	1 cut(s)	247
Hpy99I	CGWCG	2 cut(s)	130, 248
HpyAV	CCTTC	5 cut(s)	169, 200, 397, 494, 608
HpyCH4III	ACNGT	2 cut(s)	251, 305
HpyCH4V	TGCA	5 cut(s)	168, 292, 308, 347, 641
HpyF10VI	GCNNNNNNNGC	2 cut(s)	96, 599
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	3 cut(s)	73, 281, 468
Kzo9I	GATC	6 cut(s)	45, 195, 520, 606, 652, 656
LguI	GCTCTTC	1 cut(s)	112
LmnI	GCTCC	1 cut(s)	503
Lsp1109I	GCAGC	2 cut(s)	134, 580
MaeI	CTAG	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	299, 416
MalI	GATC	6 cut(s)	47, 197, 522, 608, 654, 658
MboI	GATC	6 cut(s)	45, 195, 520, 606, 652, 656
MboII	GAAGA	6 cut(s)	126, 129, 135, 138, 232, 482
MfeI	CAATTG	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	163, 436, 442, 633, 642
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	533
MnlI	CCTC	4 cut(s)	147, 181, 196, 349
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	435, 676
MslI	CAYNNNNRTG	1 cut(s)	463
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	151
MunI	CAATTG	1 cut(s)	163
Mva1269I	GAATGC	1 cut(s)	308
MvaI	CCWGG	1 cut(s)	151
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	96, 599
NdeII	GATC	6 cut(s)	45, 195, 520, 606, 652, 656
NlaIII	CATG	3 cut(s)	73, 281, 468
NmuCI	GTSAC	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	112
PctI	GAATGC	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	338, 571
PfoI	TCCNGGA	1 cut(s)	149
PkrI	GCNGC	3 cut(s)	28, 124, 595
PleI	GAGTC	1 cut(s)	87
PpsI	GAGTC	1 cut(s)	87
PshBI	ATTAAT	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	149
PspGI	CCWGG	1 cut(s)	149
PspPI	GGNCC	1 cut(s)	156
RseI	CAYNNNNRTG	1 cut(s)	463
SalI	GTCGAC	1 cut(s)	245
SapI	GCTCTTC	1 cut(s)	112
SaqAI	TTAA	2 cut(s)	435, 676
SatI	GCNGC	3 cut(s)	27, 123, 594
Sau3AI	GATC	6 cut(s)	45, 195, 520, 606, 652, 656
Sau96I	GGNCC	1 cut(s)	156
SchI	GAGTC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	151
SetI	ASST	7 cut(s)	78, 175, 192, 267, 289, 360, 604
SfcI	CTRYAG	1 cut(s)	85
SmiMI	CAYNNNNRTG	1 cut(s)	463
Sse9I	AATT	5 cut(s)	163, 436, 442, 633, 642
SsiI	CCGC	4 cut(s)	9, 24, 27, 232
SspI	AATATT	1 cut(s)	433
SspMI	CTAG	1 cut(s)	224
StyD4I	CCNGG	1 cut(s)	149
StyI	CCWWGG	2 cut(s)	272, 660
TaaI	ACNGT	2 cut(s)	251, 305
TaqI	TCGA	4 cut(s)	246, 341, 609, 655
TasI	AATT	5 cut(s)	163, 436, 442, 633, 642
TauI	GCSGC	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	338, 571
Tru1I	TTAA	2 cut(s)	435, 676
Tru9I	TTAA	2 cut(s)	435, 676
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	2 cut(s)	122, 593
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	4 cut(s)	86, 507, 627, 636
VspI	ATTAAT	1 cut(s)	435
XmiI	GTMKAC	1 cut(s)	246
XspI	CTAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.