Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Reverse (-)

44908805 .. 44912905

Gene Structure 4101 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00199040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCCACCGCGAGAGTGCTCGCCGTCTCCAACAGTTCGTGCCTGCTGACCAAGACGACGTCGTTCTTGGCGAAGCAGGGGCCGTACAGGAACAATCTCTGCTTTACTACTAGAATAGCCGCAGCGGCGCCGTCATTGTTGAAGAGGAGGTCCTTAACTTGCAGAGCTATCTACAACCCCCAGGTTCAGATCAAGGAGGAAGGCCTCCCCGAAACCCTAGACTACCGCGTCTTCCTCGTTGACCGCTCCGGCCAGAAGGTTTCACCTTGGCATGATATACCTCTGCGCTCGGGCGATGGTGCATTCCACTTTATTGTTGAGATACCCAAAGAATCGAGTGCAAAGATGGAGGTTGCTACTGATGAGCCAAACACTCCCATTAAGCAGGATACAAAGAAAGGAAAACTTCGTTACTACCCCTACAATATAAACTGGAATTATGGATTGCTTCCGCAAACATGGGAAGACCCATCCCTTGCCAACTCCGAAGTGGATGGAGCATTTGGTGATAATGATCCAGTTGATGTTGTTGAGATTGGCGAAAGTCGGAGAAAGGTTGGCGAAATTCTCAAAGTAAAACCCTTGGCAGCTTTAGCTATGATTGATGAAGGAGAACTTGACTGGAAAATAGTTGCAATTTCATTGGATGATCCAAAAGCTTCTCTGGTCAATGACATTGATGACGTCGAGAAGCATTTCCCGGGGACTCTCACTGCAATAAGGGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAGCCTGCTAACAAGTTTGGTCTTGGAAACAAGCCAGCCAACAAGGATTATGCTCTCAAGGTCATAACTGAGACCAATGAATCATGGGCTAAACTCGTCAAGAGATCAATTCCTGCTGGAGATCTGTCCCTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

297

Amino Acids

33.06

Weight (kDa)

6.85

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	104 - 281	5.6e-41	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AatII	GACGTC	2 cut(s)	62, 687
AccB1I	GGYRCC	1 cut(s)	127
AccBSI	CCGCTC	1 cut(s)	246
AccII	CGCG	2 cut(s)	11, 228
AciI	CCGC	6 cut(s)	9, 120, 125, 226, 244, 452
AclWI	GGATC	3 cut(s)	509, 644, 739
AcoI	YGGCCR	2 cut(s)	3, 250
AcsI	RAATTY	1 cut(s)	564
AcyI	GRCGYC	3 cut(s)	59, 128, 684
AfaI	GTAC	1 cut(s)	86
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	4 cut(s)	167, 590, 596, 659
AluI	AGCT	4 cut(s)	167, 590, 596, 659
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	3 cut(s)	31, 729, 821
AlwI	GGATC	3 cut(s)	509, 644, 739
Ama87I	CYCGRG	2 cut(s)	289, 700
AoxI	GGCC	4 cut(s)	3, 80, 202, 250
ApeKI	GCWGC	2 cut(s)	122, 587
ApoI	RAATTY	1 cut(s)	564
Asp700I	GAANNNNTTC	1 cut(s)	695
AspLEI	GCGC	2 cut(s)	130, 288
AspS9I	GGNCC	2 cut(s)	80, 150
AsuC2I	CCSGG	2 cut(s)	701, 702
AsuHPI	GGTGA	2 cut(s)	255, 518
AvaI	CYCGRG	2 cut(s)	289, 700
AvaII	GGWCC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	127
BbsI	GAAGAC	2 cut(s)	223, 471
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	134, 599
BccI	CCATC	5 cut(s)	290, 340, 478, 488, 746
BceAI	ACGGC	3 cut(s)	8, 67, 115
BciT130I	CCWGG	1 cut(s)	182
BciVI	GTATCC	1 cut(s)	382
BcnI	CCSGG	2 cut(s)	701, 702
BcoDI	GTCTC	3 cut(s)	31, 729, 821
BfaI	CTAG	3 cut(s)	111, 218, 892
BfoI	RGCGCY	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	382
BglI	GCCNNNNNGGC	1 cut(s)	125
BglII	AGATCT	1 cut(s)	877
BisI	GCNGC	4 cut(s)	120, 123, 126, 588
BlsI	GCNGC	4 cut(s)	121, 124, 127, 589
Bme1390I	CCNGG	3 cut(s)	182, 701, 702
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	2 cut(s)	289, 700
BmgT120I	GGNCC	2 cut(s)	80, 150
BmiI	GGNNCC	2 cut(s)	81, 129
BmrFI	CCNGG	3 cut(s)	182, 701, 702
BpiI	GAAGAC	2 cut(s)	223, 471
BpmI	CTGGAG	1 cut(s)	894
BpuEI	CTTGAG	1 cut(s)	797
BpuMI	CCSGG	2 cut(s)	701, 702
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	3 cut(s)	59, 128, 684
BsaI	GGTCTC	1 cut(s)	821
BsaJI	CCNNGG	5 cut(s)	180, 266, 582, 700, 701
Bse1I	ACTGG	4 cut(s)	437, 518, 626, 731
Bse8I	GATNNNNATC	1 cut(s)	513
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	5 cut(s)	180, 266, 582, 700, 701
BseGI	GGATG	3 cut(s)	470, 499, 652
BseJI	GATNNNNATC	1 cut(s)	513
BseMII	CTCAG	1 cut(s)	816
BseNI	ACTGG	4 cut(s)	437, 518, 626, 731
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	2 cut(s)	134, 599
Bsh1236I	CGCG	2 cut(s)	11, 228
BshFI	GGCC	4 cut(s)	5, 82, 204, 252
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	2 cut(s)	289, 700
BsiSI	CCGG	2 cut(s)	249, 701
BslFI	GGGAC	3 cut(s)	718, 737, 868
BsmAI	GTCTC	3 cut(s)	31, 729, 821
BsmBI	CGTCTC	1 cut(s)	31
BsmFI	GGGAC	3 cut(s)	718, 737, 868
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	4 cut(s)	5, 82, 204, 252
Bso31I	GGTCTC	1 cut(s)	821
BsoBI	CYCGRG	2 cut(s)	289, 700
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
BspACI	CCGC	6 cut(s)	9, 120, 125, 226, 244, 452
BspANI	GGCC	4 cut(s)	5, 82, 204, 252
BspCNI	CTCAG	1 cut(s)	817
BspFNI	CGCG	2 cut(s)	11, 228
BspLI	GGNNCC	2 cut(s)	81, 129
BspPI	GGATC	3 cut(s)	509, 644, 739
BspT107I	GGYRCC	1 cut(s)	127
BspTNI	GGTCTC	1 cut(s)	821
BsrBI	CCGCTC	1 cut(s)	246
BsrI	ACTGG	4 cut(s)	437, 518, 626, 731
BssECI	CCNNGG	5 cut(s)	180, 266, 582, 700, 701
BssMI	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
BssNI	GRCGYC	3 cut(s)	59, 128, 684
BssT1I	CCWWGG	2 cut(s)	266, 582
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	137
BstACI	GRCGYC	3 cut(s)	59, 128, 684
BstC8I	GCNNGC	4 cut(s)	21, 44, 762, 792
BstDEI	CTNAG	1 cut(s)	825
BstF5I	GGATG	3 cut(s)	470, 499, 652
BstFNI	CGCG	2 cut(s)	11, 228
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	130, 288
BstKTI	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
BstMAI	GTCTC	3 cut(s)	31, 729, 821
BstMBI	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
BstMWI	GCNNNNNNNGC	2 cut(s)	125, 593
BstNI	CCWGG	1 cut(s)	182
BstSCI	CCNGG	3 cut(s)	180, 699, 700
BstUI	CGCG	2 cut(s)	11, 228
BstV1I	GCAGC	2 cut(s)	134, 599
BstV2I	GAAGAC	2 cut(s)	223, 471
BstX2I	RGATCY	2 cut(s)	744, 877
BstYI	RGATCY	2 cut(s)	744, 877
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	4 cut(s)	5, 82, 204, 252
BtgZI	GCGATG	1 cut(s)	309
BtsCI	GGATG	3 cut(s)	470, 499, 652
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	1 cut(s)	711
Cac8I	GCNNGC	4 cut(s)	21, 44, 762, 792
CfoI	GCGC	2 cut(s)	130, 288
Cfr13I	GGNCC	2 cut(s)	80, 150
Cfr9I	CCCGGG	1 cut(s)	700
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	272, 459, 840
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	825
DinI	GGCGCC	1 cut(s)	129
DpnI	GATC	6 cut(s)	191, 516, 651, 746, 862, 879
DpnII	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	2 cut(s)	3, 250
Eam1104I	CTCTTC	1 cut(s)	137
EarI	CTCTTC	1 cut(s)	137
Eco130I	CCWWGG	2 cut(s)	266, 582
Eco147I	AGGCCT	1 cut(s)	204
Eco31I	GGTCTC	1 cut(s)	821
Eco47I	GGWCC	1 cut(s)	150
Eco88I	CYCGRG	2 cut(s)	289, 700
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	2 cut(s)	266, 582
EgeI	GGCGCC	1 cut(s)	129
EheI	GGCGCC	1 cut(s)	129
ErhI	CCWWGG	2 cut(s)	266, 582
Esp3I	CGTCTC	1 cut(s)	31
FaeI	CATG	3 cut(s)	275, 462, 843
FaiI	YATR	9 cut(s)	273, 278, 428, 441, 460, 599, 807, 821, 841
FalI	AAGNNNNNCTT	4 cut(s)	390, 422, 600, 632
FaqI	GGGAC	3 cut(s)	718, 737, 868
FatI	CATG	3 cut(s)	271, 458, 839
Fnu4HI	GCNGC	4 cut(s)	120, 123, 126, 588
FokI	GGATG	3 cut(s)	457, 506, 659
Fsp4HI	GCNGC	4 cut(s)	120, 123, 126, 588
FspBI	CTAG	3 cut(s)	111, 218, 892
GlaI	GCGC	2 cut(s)	129, 287
GluI	GCNGC	4 cut(s)	120, 123, 126, 588
GsuI	CTGGAG	1 cut(s)	894
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	5, 82, 204, 252
HapII	CCGG	2 cut(s)	249, 701
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	2 cut(s)	130, 288
Hin1I	GRCGYC	3 cut(s)	59, 128, 684
Hin1II	CATG	3 cut(s)	275, 462, 843
Hin6I	GCGC	2 cut(s)	128, 286
HinP1I	GCGC	2 cut(s)	128, 286
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	1 cut(s)	657
HinfI	GANTC	3 cut(s)	332, 706, 836
HpaII	CCGG	2 cut(s)	249, 701
HphI	GGTGA	2 cut(s)	255, 518
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	189, 487, 549
Hpy188III	TCNNGA	2 cut(s)	688, 856
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	3 cut(s)	61, 64, 689
HpyAV	CCTTC	3 cut(s)	194, 250, 602
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	2 cut(s)	59, 684
HpyCH4V	TGCA	5 cut(s)	162, 302, 341, 635, 716
HpyF10VI	GCNNNNNNNGC	2 cut(s)	125, 593
HpyF3I	CTNAG	1 cut(s)	825
HpySE526I	ACGT	2 cut(s)	59, 684
Hsp92I	GRCGYC	3 cut(s)	59, 128, 684
Hsp92II	CATG	3 cut(s)	275, 462, 843
HspAI	GCGC	2 cut(s)	128, 286
KasI	GGCGCC	1 cut(s)	127
Kzo9I	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
LmnI	GCTCC	2 cut(s)	251, 497
Lsp1109I	GCAGC	2 cut(s)	134, 599
MaeI	CTAG	3 cut(s)	111, 218, 892
MaeII	ACGT	2 cut(s)	59, 684
MaeIII	GTNAC	1 cut(s)	410
MalI	GATC	6 cut(s)	191, 516, 651, 746, 862, 879
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
MboII	GAAGA	3 cut(s)	154, 223, 476
MflI	RGATCY	2 cut(s)	744, 877
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	436, 564, 636, 864
MluNI	TGGCCA	1 cut(s)	5
Mly113I	GGCGCC	1 cut(s)	128
MlyI	GAGTC	1 cut(s)	700
MmeI	TCCRAC	2 cut(s)	54, 527
MnlI	CCTC	7 cut(s)	138, 141, 190, 215, 245, 291, 343
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	695
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	155, 381
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	125
MspI	CCGG	2 cut(s)	249, 701
MspR9I	CCNGG	3 cut(s)	182, 701, 702
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	2 cut(s)	11, 228
MwoI	GCNNNNNNNGC	2 cut(s)	125, 593
NarI	GGCGCC	1 cut(s)	128
NciI	CCSGG	2 cut(s)	701, 702
NdeII	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
NlaIII	CATG	3 cut(s)	275, 462, 843
NlaIV	GGNNCC	2 cut(s)	81, 129
PceI	AGGCCT	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	302
PdmI	GAANNNNTTC	1 cut(s)	695
PfeI	GAWTC	2 cut(s)	332, 836
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	121, 124, 127, 589
PleI	GAGTC	1 cut(s)	700
PluTI	GGCGCC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	700
PpuMI	RGGWCCY	1 cut(s)	150
Psp5II	RGGWCCY	1 cut(s)	150
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	2 cut(s)	81, 129
PspPI	GGNCC	2 cut(s)	80, 150
PspPPI	RGGWCCY	1 cut(s)	150
PsuI	RGATCY	2 cut(s)	744, 877
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
SaqAI	TTAA	2 cut(s)	155, 381
SatI	GCNGC	4 cut(s)	120, 123, 126, 588
Sau3AI	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
Sau96I	GGNCC	2 cut(s)	80, 150
SchI	GAGTC	1 cut(s)	700
ScrFI	CCNGG	3 cut(s)	182, 701, 702
SduI	GDGCHC	1 cut(s)	21
SfoI	GGCGCC	1 cut(s)	129
SinI	GGWCC	1 cut(s)	150
SmaI	CCCGGG	1 cut(s)	702
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	4 cut(s)	436, 564, 636, 864
SseBI	AGGCCT	1 cut(s)	204
SsiI	CCGC	6 cut(s)	9, 120, 125, 226, 244, 452
SspDI	GGCGCC	1 cut(s)	127
SspMI	CTAG	3 cut(s)	111, 218, 892
StuI	AGGCCT	1 cut(s)	204
StyD4I	CCNGG	3 cut(s)	180, 699, 700
StyI	CCWWGG	2 cut(s)	266, 582
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	2 cut(s)	62, 687
TaqI	TCGA	2 cut(s)	335, 687
TasI	AATT	4 cut(s)	436, 564, 636, 864
TauI	GCSGC	2 cut(s)	122, 128
TfiI	GAWTC	2 cut(s)	332, 836
Tru1I	TTAA	2 cut(s)	155, 381
Tru9I	TTAA	2 cut(s)	155, 381
TscAI	CASTG	1 cut(s)	718
TseI	GCWGC	2 cut(s)	122, 587
TspDTI	ATGAA	3 cut(s)	621, 630, 849
TspMI	CCCGGG	1 cut(s)	700
TspRI	CASTG	1 cut(s)	718
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	150
XapI	RAATTY	1 cut(s)	564
XcmI	CCANNNNNNNNNTGG	1 cut(s)	487
XmaI	CCCGGG	1 cut(s)	700
XmnI	GAANNNNTTC	1 cut(s)	695
XspI	CTAG	3 cut(s)	111, 218, 892
ZraI	GACGTC	2 cut(s)	60, 685

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.