Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Forward (+)

22627844 .. 22631657

Gene Structure 3814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g24300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

ATGGCCACCGCAAGAGTGTTGACTGTCTCCAATACTTCCTGCTTACTCTCCAAAACGACGTCGTTCCCGGTGAAGCAGAGTCCCTACGGCACCAGCCTTCGCTTTACTAGAAGAAGAGTAGCCTCATTGTCGTCTTCCTCCAGAAGGTCCTTCAATTGCACAGCTATCTACAAACCCGAAGTTCAGATCAGGGAGGAAGGCCAGCCTGAAACCCTAGACTACCGGCTCTTCTTCGTCGATCGCTCTGGTCAAAAGGTTTCGCCTTGGCATGACATACCTTTGCAAGTGGGTGATGGTGCATTCAACTTTGTGGTTGAAATACCCAAAGAATCAAGTGCAAAGATGGAGGTTGCTACTGATGAGCCACACACCCCGATAAAGCAGGATACAAAGAAGGGGAAACTTCGTTACTACCCGTACAATATAAATTGGAATTATGGGTTGCTTCCGCAAACTTGGGAAGACCCAACCCTTGCTAATGCTGAAGTTGAAGGAGCCTTTGGGGATAATGATCCAGTTGATGTTGTTGAGATAGGCGATAGTCGGAGAAGGATTGGCGAGATTCTCAAAGTAAAGCCTTTGGCTGCTTTAGCTATGATTGATGAAGGGGAGCTTGATTGGAAAATTATTGCAATTTCATTGGATGATCGATCATTACAAGGGCTTCTCTCATTAATGACAATGATGATGTTGAGAAGCATTTCCCAGTATGGGACTCTCACTGCAATAAGGGACTGGTTTAGAGACTACAAGATACCAGATGGAAAGCCGGCTAACAAGTTTGATCTTGGCAACAAAGCAGCAAACAAGGATTATGCTCTTAAGGTCATAACCGAAACTAATGAATCATGGGCCAAGCTTGTCAAGAGATCGATCCCTGCCGGAGAACTGTCACTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

301

Amino Acids

33.72

Weight (kDa)

8.35

Isoelectric Point (pI)

52.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	62
AccB1I	GGYRCC	1 cut(s)	89
AciI	CCGC	2 cut(s)	9, 449
AclWI	GGATC	2 cut(s)	506, 868
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	504
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	419
AfiI	CCNNNNNNNGG	2 cut(s)	144, 711
AflII	CTTAAG	1 cut(s)	821
AgsI	TTSAA	4 cut(s)	154, 304, 317, 491
AjuI	GAANNNNNNNTTGG	2 cut(s)	483, 515
AluBI	AGCT	4 cut(s)	164, 593, 613, 859
AluI	AGCT	4 cut(s)	164, 593, 613, 859
Alw26I	GTCTC	2 cut(s)	31, 738
AlwI	GGATC	2 cut(s)	506, 868
AoxI	GGCC	3 cut(s)	3, 199, 852
ApeKI	GCWGC	2 cut(s)	584, 800
AseI	ATTAAT	1 cut(s)	674
Asp700I	GAANNNNTTC	1 cut(s)	700
AspS9I	GGNCC	2 cut(s)	147, 852
AsuC2I	CCSGG	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	82, 302
AvaII	GGWCC	1 cut(s)	147
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	89
BbsI	GAAGAC	2 cut(s)	126, 468
BbvI	GCAGC	2 cut(s)	571, 812
BccI	CCATC	3 cut(s)	287, 337, 755
BceAI	ACGGC	1 cut(s)	103
BciVI	GTATCC	1 cut(s)	379
BcnI	CCSGG	1 cut(s)	68
BcoDI	GTCTC	2 cut(s)	31, 738
BfaI	CTAG	2 cut(s)	108, 215
BfrI	CTTAAG	1 cut(s)	821
BfuI	GTATCC	1 cut(s)	379
BisI	GCNGC	2 cut(s)	585, 801
BlsI	GCNGC	2 cut(s)	586, 802
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	147
BmgT120I	GGNCC	2 cut(s)	147, 852
BmiI	GGNNCC	2 cut(s)	91, 496
BmrFI	CCNGG	1 cut(s)	68
BmrI	ACTGGG	1 cut(s)	700
BmuI	ACTGGG	1 cut(s)	700
BpiI	GAAGAC	2 cut(s)	126, 468
BpmI	CTGGAG	1 cut(s)	124
BpuMI	CCSGG	1 cut(s)	68
Bsa29I	ATCGAT	2 cut(s)	649, 872
BsaBI	GATNNNNATC	1 cut(s)	510
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 711
Bse118I	RCCGGY	2 cut(s)	222, 769
Bse1I	ACTGG	3 cut(s)	515, 706, 740
Bse8I	GATNNNNATC	1 cut(s)	510
BseCI	ATCGAT	2 cut(s)	649, 872
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	649
BseJI	GATNNNNATC	1 cut(s)	510
BseLI	CCNNNNNNNGG	2 cut(s)	144, 711
BseNI	ACTGG	3 cut(s)	515, 706, 740
BseXI	GCAGC	2 cut(s)	571, 812
Bsh1285I	CGRYCG	1 cut(s)	241
BshFI	GGCC	3 cut(s)	5, 201, 854
BshNI	GGYRCC	1 cut(s)	89
BshVI	ATCGAT	2 cut(s)	649, 872
BsiEI	CGRYCG	1 cut(s)	241
BsiSI	CCGG	4 cut(s)	68, 223, 770, 882
BslFI	GGGAC	3 cut(s)	66, 727, 746
BslI	CCNNNNNNNGG	2 cut(s)	144, 711
BsmAI	GTCTC	2 cut(s)	31, 738
BsmFI	GGGAC	3 cut(s)	66, 727, 746
BsmI	GAATGC	1 cut(s)	299
BsnI	GGCC	3 cut(s)	5, 201, 854
Bsp143I	GATC	8 cut(s)	186, 238, 511, 646, 650, 784, 869, 873
BspACI	CCGC	2 cut(s)	9, 449
BspANI	GGCC	3 cut(s)	5, 201, 854
BspDI	ATCGAT	2 cut(s)	649, 872
BspLI	GGNNCC	2 cut(s)	91, 496
BspPI	GGATC	2 cut(s)	506, 868
BspQI	GCTCTTC	1 cut(s)	233
BspT107I	GGYRCC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	821
BsrFI	RCCGGY	2 cut(s)	222, 769
BsrI	ACTGG	3 cut(s)	515, 706, 740
BssAI	RCCGGY	2 cut(s)	222, 769
BssECI	CCNNGG	1 cut(s)	263
BssMI	GATC	8 cut(s)	186, 238, 511, 646, 650, 784, 869, 873
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	25, 891
Bst6I	CTCTTC	2 cut(s)	109, 233
BstACI	GRCGYC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	821
BstC8I	GCNNGC	2 cut(s)	203, 771
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	649
BstKTI	GATC	8 cut(s)	189, 241, 514, 649, 653, 787, 872, 876
BstMAI	GTCTC	2 cut(s)	31, 738
BstMBI	GATC	8 cut(s)	186, 238, 511, 646, 650, 784, 869, 873
BstMCI	CGRYCG	1 cut(s)	241
BstMWI	GCNNNNNNNGC	1 cut(s)	590
BstSCI	CCNGG	1 cut(s)	66
BstV1I	GCAGC	2 cut(s)	571, 812
BstV2I	GAAGAC	2 cut(s)	126, 468
Bsu15I	ATCGAT	2 cut(s)	649, 872
BsuI	GTATCC	1 cut(s)	379
BsuRI	GGCC	3 cut(s)	5, 201, 854
BsuTUI	ATCGAT	2 cut(s)	649, 872
BtsCI	GGATG	1 cut(s)	649
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	1 cut(s)	720
Cac8I	GCNNGC	2 cut(s)	203, 771
Cfr10I	RCCGGY	2 cut(s)	222, 769
Cfr13I	GGNCC	2 cut(s)	147, 852
ClaI	ATCGAT	2 cut(s)	649, 872
Csp6I	GTAC	1 cut(s)	418
CviAII	CATG	2 cut(s)	269, 849
CviQI	GTAC	1 cut(s)	418
DpnI	GATC	8 cut(s)	188, 240, 513, 648, 652, 786, 871, 875
DpnII	GATC	8 cut(s)	186, 238, 511, 646, 650, 784, 869, 873
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	109, 233
EarI	CTCTTC	2 cut(s)	109, 233
Eco130I	CCWWGG	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	504
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	147
EcoT14I	CCWWGG	1 cut(s)	263
ErhI	CCWWGG	1 cut(s)	263
FaeI	CATG	2 cut(s)	272, 852
FalI	AAGNNNNNCTT	2 cut(s)	597, 629
FaqI	GGGAC	3 cut(s)	66, 727, 746
FatI	CATG	2 cut(s)	268, 848
Fnu4HI	GCNGC	2 cut(s)	585, 801
FokI	GGATG	1 cut(s)	656
Fsp4HI	GCNGC	2 cut(s)	585, 801
FspBI	CTAG	2 cut(s)	108, 215
GluI	GCNGC	2 cut(s)	585, 801
GsuI	CTGGAG	1 cut(s)	124
HaeIII	GGCC	3 cut(s)	5, 201, 854
HapII	CCGG	4 cut(s)	68, 223, 770, 882
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	2 cut(s)	272, 852
HincII	GTYRAC	1 cut(s)	21
HindII	GTYRAC	1 cut(s)	21
HindIII	AAGCTT	1 cut(s)	857
HinfI	GANTC	5 cut(s)	79, 329, 562, 715, 845
HpaII	CCGG	4 cut(s)	68, 223, 770, 882
HphI	GGTGA	2 cut(s)	82, 302
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	186, 546
Hpy188III	TCNNGA	2 cut(s)	141, 865
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	3 cut(s)	61, 64, 239
HpyAV	CCTTC	8 cut(s)	107, 138, 160, 191, 388, 485, 543, 599
HpyCH4III	ACNGT	2 cut(s)	25, 891
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	7 cut(s)	159, 283, 299, 338, 632, 725, 899
HpyF10VI	GCNNNNNNNGC	1 cut(s)	590
HpySE526I	ACGT	1 cut(s)	59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	2 cut(s)	272, 852
KroI	GCCGGC	1 cut(s)	769
KroNI	GCCGGC	1 cut(s)	771
Kzo9I	GATC	8 cut(s)	186, 238, 511, 646, 650, 784, 869, 873
LguI	GCTCTTC	1 cut(s)	233
LmnI	GCTCC	2 cut(s)	494, 610
Lsp1109I	GCAGC	2 cut(s)	571, 812
MaeI	CTAG	2 cut(s)	108, 215
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	2 cut(s)	407, 891
MalI	GATC	8 cut(s)	188, 240, 513, 648, 652, 786, 871, 875
MboI	GATC	8 cut(s)	186, 238, 511, 646, 650, 784, 869, 873
MboII	GAAGA	6 cut(s)	123, 126, 126, 220, 223, 473
MfeI	CAATTG	1 cut(s)	154
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	154, 427, 433, 624, 633
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	88, 709
MmeI	TCCRAC	1 cut(s)	524
MnlI	CCTC	4 cut(s)	133, 148, 187, 340
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	769
MroXI	GAANNNNTTC	1 cut(s)	700
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	674, 822
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	821
MspI	CCGG	4 cut(s)	68, 223, 770, 882
MspR9I	CCNGG	1 cut(s)	68
MunI	CAATTG	1 cut(s)	154
Mva1269I	GAATGC	1 cut(s)	299
MwoI	GCNNNNNNNGC	1 cut(s)	590
NaeI	GCCGGC	1 cut(s)	771
NciI	CCSGG	1 cut(s)	68
NdeII	GATC	8 cut(s)	186, 238, 511, 646, 650, 784, 869, 873
NgoMIV	GCCGGC	1 cut(s)	769
NlaIII	CATG	2 cut(s)	272, 852
NlaIV	GGNNCC	2 cut(s)	91, 496
NmuCI	GTSAC	1 cut(s)	891
PciSI	GCTCTTC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	771
PdmI	GAANNNNTTC	1 cut(s)	700
PfeI	GAWTC	3 cut(s)	329, 562, 845
PkrI	GCNGC	2 cut(s)	586, 802
Ple19I	CGATCG	1 cut(s)	241
PleI	GAGTC	2 cut(s)	87, 709
PpsI	GAGTC	2 cut(s)	87, 709
PpuMI	RGGWCCY	1 cut(s)	147
PshBI	ATTAAT	1 cut(s)	674
Psp5II	RGGWCCY	1 cut(s)	147
PspN4I	GGNNCC	2 cut(s)	91, 496
PspPI	GGNCC	2 cut(s)	147, 852
PspPPI	RGGWCCY	1 cut(s)	147
PvuI	CGATCG	1 cut(s)	241
RsaI	GTAC	1 cut(s)	419
RsaNI	GTAC	1 cut(s)	418
SapI	GCTCTTC	1 cut(s)	233
SaqAI	TTAA	2 cut(s)	674, 822
SatI	GCNGC	2 cut(s)	585, 801
Sau3AI	GATC	8 cut(s)	186, 238, 511, 646, 650, 784, 869, 873
Sau96I	GGNCC	2 cut(s)	147, 852
SchI	GAGTC	2 cut(s)	88, 709
ScrFI	CCNGG	1 cut(s)	68
SinI	GGWCC	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	821
SmoI	CTYRAG	1 cut(s)	821
Sse9I	AATT	5 cut(s)	154, 427, 433, 624, 633
SsiI	CCGC	2 cut(s)	9, 449
SspMI	CTAG	2 cut(s)	108, 215
StyD4I	CCNGG	1 cut(s)	66
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	2 cut(s)	25, 891
TaiI	ACGT	1 cut(s)	62
TaqI	TCGA	3 cut(s)	237, 649, 872
TasI	AATT	5 cut(s)	154, 427, 433, 624, 633
TfiI	GAWTC	3 cut(s)	329, 562, 845
Tru1I	TTAA	2 cut(s)	674, 822
Tru9I	TTAA	2 cut(s)	674, 822
TscAI	CASTG	1 cut(s)	727
TseFI	GTSAC	1 cut(s)	891
TseI	GCWGC	2 cut(s)	584, 800
Tsp45I	GTSAC	1 cut(s)	891
TspDTI	ATGAA	3 cut(s)	618, 627, 858
TspRI	CASTG	1 cut(s)	727
Vha464I	CTTAAG	1 cut(s)	821
VpaK11BI	GGWCC	1 cut(s)	147
VspI	ATTAAT	1 cut(s)	674
XagI	CCTNNNNNAGG	1 cut(s)	142
XmnI	GAANNNNTTC	1 cut(s)	700
XspI	CTAG	2 cut(s)	108, 215
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.