Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Reverse (-)

4727593 .. 4732388

Gene Structure 4796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g04510.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGCACCCCAAACAAAATACGCAAACGACAAGAAGAGCCAATCAAAGCTTACCACTTGTTCCTGTGGCTCAGAAACCCAAACACACCCTCTCTCGATCAGTCCCACTCTCACTCGTCCCTTCATCAGAGCCGTCAGTCAGGAGCCATGGCCACCGCGAGAGTGCTGACCGCCGCCAATACTTCCTGCTTGCTCTCCAAGGCGACGTCGTTCCTTCCGAAGCAGAGTCCCTACAGCACTCCCAGCCTTTGCTTCACCAGAAGAAGAGCAGCGTCGCTGTCGTTGTCGTCTTCGTCCAGGATCAGCAGGTCCTTCATTTGCACAGCTATCTACAATCTTCCGAGGTTCAGATCAAGGAGGAAGGCCAGCCCGAAACCCTAGACTACCGCCTCTTCTTCGTCGACCGTTCCGGTCAAAAGGTTTCGCCTTGGCATGATATACCATTGCAAGTGGGTGATGGTGTATTCAACTTTGTGGTTGAAATACCCAAAGAATCGAGTGCAAAGATGGAGGTTGCTACTGATGAGCCACACACCCCGATAAAGCAGGATACAAAGAAAGGAAAACTTCGTTACTATCCCTACAACATTAATTGGAATTATGGGTTGCTTCCACAAACGTGGGAAGACCCATCACTTGCTAACGATGAAGTTGAAGGAGCATTTGGGGATAATGATCCAGTTGATGTTGTTGAGATAGGTGATAGTCAGAGAAAGATTGGTGAGATTCTCAAAGTAAAGCCATTGGCTGCTTTAGCTATGATCGATGAAGGGGAACTTGACTGGAAAATTGTTGCAATTTCATTTGATGATCCAAGGGCTTCTCTAGTTAACGACATTGATGATGTTGAGAAGCATTTCCCAGGGACTCTCATTGCAATAAGGGACTGGTTCAGAGACTACAAGATACCTGATGGAAAGCCTGCTAACAAATTTGGTCTTGGCAACAAAGCAGCAAACAAGGATTATGCTCTTAAGGTCATATCCGAAACCAATGAATCGTGGGCAAAGCTTGTCAAGAGATCAATTCCTGCTGGAGAACTCTCACTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

351

Amino Acids

39.25

Weight (kDa)

5.8

Isoelectric Point (pI)

48.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	207
Acc36I	ACCTGC	1 cut(s)	295
AccI	GTMKAC	1 cut(s)	399
AccII	CGCG	1 cut(s)	156
AciI	CCGC	4 cut(s)	154, 169, 172, 385
AclWI	GGATC	3 cut(s)	306, 668, 803
AcoI	YGGCCR	1 cut(s)	148
AcsI	RAATTY	1 cut(s)	929
AcyI	GRCGYC	1 cut(s)	204
AflII	CTTAAG	1 cut(s)	971
AgsI	TTSAA	3 cut(s)	466, 479, 653
AjnI	CCWGG	2 cut(s)	294, 859
AjuI	GAANNNNNNNTTGG	2 cut(s)	645, 677
AleI	CACNNNNGTG	1 cut(s)	616
AluBI	AGCT	4 cut(s)	48, 324, 755, 1009
AluI	AGCT	4 cut(s)	48, 324, 755, 1009
Alw26I	GTCTC	1 cut(s)	888
AlwI	GGATC	3 cut(s)	306, 668, 803
AoxI	GGCC	2 cut(s)	148, 361
ApeKI	GCWGC	3 cut(s)	267, 746, 950
ApoI	RAATTY	1 cut(s)	929
AseI	ATTAAT	1 cut(s)	588
Asp700I	GAANNNNTTC	1 cut(s)	854
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	4 cut(s)	245, 464, 710, 731
AvaII	GGWCC	1 cut(s)	307
BalI	TGGCCA	1 cut(s)	150
BbsI	GAAGAC	2 cut(s)	280, 630
BbvI	GCAGC	3 cut(s)	279, 733, 962
BccI	CCATC	4 cut(s)	449, 499, 637, 905
BceAI	ACGGC	1 cut(s)	115
BciT130I	CCWGG	2 cut(s)	296, 861
BciVI	GTATCC	1 cut(s)	541
BcoDI	GTCTC	1 cut(s)	888
BfaI	CTAG	2 cut(s)	377, 824
BfmI	CTRYAG	1 cut(s)	230
BfrI	CTTAAG	1 cut(s)	971
BfuAI	ACCTGC	1 cut(s)	295
BfuI	GTATCC	1 cut(s)	541
BisI	GCNGC	4 cut(s)	172, 268, 747, 951
BlsI	GCNGC	4 cut(s)	173, 269, 748, 952
Bme1390I	CCNGG	2 cut(s)	296, 861
Bme18I	GGWCC	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	1 cut(s)	143
BmrFI	CCNGG	2 cut(s)	296, 861
BpiI	GAAGAC	2 cut(s)	280, 630
BpmI	CTGGAG	1 cut(s)	1053
Bsa29I	ATCGAT	1 cut(s)	762
BsaBI	GATNNNNATC	1 cut(s)	672
BsaHI	GRCGYC	1 cut(s)	204
BsaJI	CCNNGG	7 cut(s)	145, 196, 339, 425, 812, 859, 860
BsaWI	WCCGGW	1 cut(s)	407
Bse1I	ACTGG	3 cut(s)	677, 785, 890
Bse3DI	GCAATG	2 cut(s)	440, 870
Bse8I	GATNNNNATC	1 cut(s)	672
BseBI	CCWGG	2 cut(s)	296, 861
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	7 cut(s)	145, 196, 339, 425, 812, 859, 860
BseJI	GATNNNNATC	1 cut(s)	672
BseMI	GCAATG	2 cut(s)	440, 870
BseMII	CTCAG	1 cut(s)	83
BseNI	ACTGG	3 cut(s)	677, 785, 890
BseXI	GCAGC	3 cut(s)	279, 733, 962
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	403
BshFI	GGCC	2 cut(s)	150, 363
BshVI	ATCGAT	1 cut(s)	762
BsiEI	CGRYCG	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	5 cut(s)	86, 101, 211, 877, 896
BsmAI	GTCTC	1 cut(s)	888
BsmFI	GGGAC	5 cut(s)	86, 101, 211, 877, 896
BsnI	GGCC	2 cut(s)	150, 363
Bsp143I	GATC	7 cut(s)	95, 298, 348, 673, 759, 808, 1019
Bsp19I	CCATGG	1 cut(s)	145
BspACI	CCGC	4 cut(s)	154, 169, 172, 385
BspANI	GGCC	2 cut(s)	150, 363
BspCNI	CTCAG	1 cut(s)	82
BspDI	ATCGAT	1 cut(s)	762
BspFNI	CGCG	1 cut(s)	156
BspLI	GGNNCC	1 cut(s)	143
BspMI	ACCTGC	1 cut(s)	295
BspPI	GGATC	3 cut(s)	306, 668, 803
BspQI	GCTCTTC	2 cut(s)	28, 257
BspTI	CTTAAG	1 cut(s)	971
BsrDI	GCAATG	2 cut(s)	440, 870
BsrI	ACTGG	3 cut(s)	677, 785, 890
BssECI	CCNNGG	7 cut(s)	145, 196, 339, 425, 812, 859, 860
BssMI	GATC	7 cut(s)	95, 298, 348, 673, 759, 808, 1019
BssNI	GRCGYC	1 cut(s)	204
BssT1I	CCWWGG	4 cut(s)	145, 196, 425, 812
Bst2UI	CCWGG	2 cut(s)	296, 861
Bst4CI	ACNGT	1 cut(s)	404
Bst6I	CTCTTC	3 cut(s)	28, 257, 395
BstACI	GRCGYC	1 cut(s)	204
BstAFI	CTTAAG	1 cut(s)	971
BstC8I	GCNNGC	3 cut(s)	189, 365, 921
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	145
BstFNI	CGCG	1 cut(s)	156
BstKTI	GATC	7 cut(s)	98, 301, 351, 676, 762, 811, 1022
BstMAI	GTCTC	1 cut(s)	888
BstMBI	GATC	7 cut(s)	95, 298, 348, 673, 759, 808, 1019
BstMCI	CGRYCG	1 cut(s)	403
BstMWI	GCNNNNNNNGC	2 cut(s)	241, 752
BstNI	CCWGG	2 cut(s)	296, 861
BstSCI	CCNGG	2 cut(s)	294, 859
BstSFI	CTRYAG	1 cut(s)	230
BstUI	CGCG	1 cut(s)	156
BstV1I	GCAGC	3 cut(s)	279, 733, 962
BstV2I	GAAGAC	2 cut(s)	280, 630
BstXI	CCANNNNNNTGG	1 cut(s)	618
Bsu15I	ATCGAT	1 cut(s)	762
BsuI	GTATCC	1 cut(s)	541
BsuRI	GGCC	2 cut(s)	150, 363
BsuTUI	ATCGAT	1 cut(s)	762
BtgI	CCRYGG	1 cut(s)	145
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	3 cut(s)	189, 365, 921
Cfr13I	GGNCC	1 cut(s)	307
ClaI	ATCGAT	1 cut(s)	762
CseI	GACGC	1 cut(s)	259
CviAII	CATG	2 cut(s)	146, 431
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	7 cut(s)	97, 300, 350, 675, 761, 810, 1021
DpnII	GATC	7 cut(s)	95, 298, 348, 673, 759, 808, 1019
EaeI	YGGCCR	1 cut(s)	148
Eam1104I	CTCTTC	3 cut(s)	28, 257, 395
EarI	CTCTTC	3 cut(s)	28, 257, 395
Eco130I	CCWWGG	4 cut(s)	145, 196, 425, 812
Eco47I	GGWCC	1 cut(s)	307
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	2 cut(s)	294, 859
EcoT14I	CCWWGG	4 cut(s)	145, 196, 425, 812
ErhI	CCWWGG	4 cut(s)	145, 196, 425, 812
FaeI	CATG	2 cut(s)	149, 434
FaiI	YATR	8 cut(s)	147, 432, 437, 600, 758, 966, 980, 1051
FalI	AAGNNNNNCTT	4 cut(s)	549, 581, 759, 791
FaqI	GGGAC	5 cut(s)	86, 101, 211, 877, 896
FatI	CATG	2 cut(s)	145, 430
FblI	GTMKAC	1 cut(s)	399
Fnu4HI	GCNGC	4 cut(s)	172, 268, 747, 951
Fsp4HI	GCNGC	4 cut(s)	172, 268, 747, 951
FspBI	CTAG	2 cut(s)	377, 824
GluI	GCNGC	4 cut(s)	172, 268, 747, 951
GsaI	CCCAGC	1 cut(s)	244
GsuI	CTGGAG	1 cut(s)	1053
HaeIII	GGCC	2 cut(s)	150, 363
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	149, 434
HincII	GTYRAC	2 cut(s)	400, 829
HindII	GTYRAC	2 cut(s)	400, 829
HindIII	AAGCTT	2 cut(s)	46, 1007
HinfI	GANTC	5 cut(s)	224, 491, 724, 865, 995
HpaI	GTTAAC	1 cut(s)	829
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	4 cut(s)	245, 464, 710, 731
Hpy166II	GTNNAC	2 cut(s)	400, 829
Hpy188I	TCNGA	8 cut(s)	72, 127, 217, 340, 348, 708, 893, 985
Hpy188III	TCNNGA	3 cut(s)	93, 139, 1015
Hpy8I	GTNNAC	2 cut(s)	400, 829
Hpy99I	CGWCG	4 cut(s)	206, 209, 275, 401
HpyAV	CCTTC	6 cut(s)	129, 222, 320, 353, 647, 761
HpyCH4III	ACNGT	1 cut(s)	404
HpyCH4IV	ACGT	2 cut(s)	204, 617
HpyCH4V	TGCA	7 cut(s)	4, 319, 445, 500, 794, 875, 1049
HpyF10VI	GCNNNNNNNGC	2 cut(s)	241, 752
HpyF3I	CTNAG	1 cut(s)	69
HpySE526I	ACGT	2 cut(s)	204, 617
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	149, 434
KspAI	GTTAAC	1 cut(s)	829
Kzo9I	GATC	7 cut(s)	95, 298, 348, 673, 759, 808, 1019
LguI	GCTCTTC	2 cut(s)	28, 257
LmnI	GCTCC	2 cut(s)	141, 656
Lsp1109I	GCAGC	3 cut(s)	279, 733, 962
MaeI	CTAG	2 cut(s)	377, 824
MaeII	ACGT	2 cut(s)	204, 617
MaeIII	GTNAC	1 cut(s)	569
MalI	GATC	7 cut(s)	97, 300, 350, 675, 761, 810, 1021
MboI	GATC	7 cut(s)	95, 298, 348, 673, 759, 808, 1019
MboII	GAAGA	8 cut(s)	45, 271, 274, 280, 327, 382, 385, 635
MlsI	TGGCCA	1 cut(s)	150
MluCI	AATT	6 cut(s)	589, 595, 786, 795, 929, 1023
MluNI	TGGCCA	1 cut(s)	150
MlyI	GAGTC	2 cut(s)	233, 859
MnlI	CCTC	5 cut(s)	98, 334, 349, 398, 502
Mox20I	TGGCCA	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	854
MscI	TGGCCA	1 cut(s)	150
MseI	TTAA	3 cut(s)	588, 828, 972
MslI	CAYNNNNRTG	1 cut(s)	616
Msp20I	TGGCCA	1 cut(s)	150
MspCI	CTTAAG	1 cut(s)	971
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	296, 861
MvaI	CCWGG	2 cut(s)	296, 861
MvnI	CGCG	1 cut(s)	156
MwoI	GCNNNNNNNGC	2 cut(s)	241, 752
NcoI	CCATGG	1 cut(s)	145
NdeII	GATC	7 cut(s)	95, 298, 348, 673, 759, 808, 1019
NlaIII	CATG	2 cut(s)	149, 434
NlaIV	GGNNCC	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	616
PasI	CCCWGGG	1 cut(s)	860
PciSI	GCTCTTC	2 cut(s)	28, 257
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdmI	GAANNNNTTC	1 cut(s)	854
PfeI	GAWTC	3 cut(s)	491, 724, 995
PfoI	TCCNGGA	1 cut(s)	294
PkrI	GCNGC	4 cut(s)	173, 269, 748, 952
PleI	GAGTC	2 cut(s)	232, 859
PpsI	GAGTC	2 cut(s)	232, 859
PpuMI	RGGWCCY	1 cut(s)	307
PshBI	ATTAAT	1 cut(s)	588
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	2 cut(s)	294, 859
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	2 cut(s)	294, 859
PspN4I	GGNNCC	1 cut(s)	143
PspPI	GGNCC	1 cut(s)	307
PspPPI	RGGWCCY	1 cut(s)	307
RseI	CAYNNNNRTG	1 cut(s)	616
SalI	GTCGAC	1 cut(s)	398
SapI	GCTCTTC	2 cut(s)	28, 257
SaqAI	TTAA	3 cut(s)	588, 828, 972
SatI	GCNGC	4 cut(s)	172, 268, 747, 951
Sau3AI	GATC	7 cut(s)	95, 298, 348, 673, 759, 808, 1019
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	2 cut(s)	233, 859
ScrFI	CCNGG	2 cut(s)	296, 861
SfcI	CTRYAG	1 cut(s)	230
SinI	GGWCC	1 cut(s)	307
SmiMI	CAYNNNNRTG	1 cut(s)	616
SmlI	CTYRAG	1 cut(s)	971
SmoI	CTYRAG	1 cut(s)	971
Sse9I	AATT	6 cut(s)	589, 595, 786, 795, 929, 1023
SsiI	CCGC	4 cut(s)	154, 169, 172, 385
SspMI	CTAG	2 cut(s)	377, 824
StyD4I	CCNGG	2 cut(s)	294, 859
StyI	CCWWGG	4 cut(s)	145, 196, 425, 812
TaaI	ACNGT	1 cut(s)	404
TaiI	ACGT	2 cut(s)	207, 620
TaqI	TCGA	4 cut(s)	94, 399, 494, 762
TasI	AATT	6 cut(s)	589, 595, 786, 795, 929, 1023
TauI	GCSGC	1 cut(s)	174
TfiI	GAWTC	3 cut(s)	491, 724, 995
Tru1I	TTAA	3 cut(s)	588, 828, 972
Tru9I	TTAA	3 cut(s)	588, 828, 972
TseI	GCWGC	3 cut(s)	267, 746, 950
TspDTI	ATGAA	6 cut(s)	111, 302, 660, 780, 789, 1008
Vha464I	CTTAAG	1 cut(s)	971
VpaK11BI	GGWCC	1 cut(s)	307
VspI	ATTAAT	1 cut(s)	588
XapI	RAATTY	1 cut(s)	929
XmiI	GTMKAC	1 cut(s)	399
XmnI	GAANNNNTTC	1 cut(s)	854
XspI	CTAG	2 cut(s)	377, 824
ZraI	GACGTC	1 cut(s)	205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.