Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000381.1

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Reverse (-)

168464 .. 174695

Gene Structure 6232 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000381.1_g000036.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

atgcctagtgtggaggcaacttggcaaggccggaaaggtggcttcccggcggcggatttgcgacttccggataccgtttcaccttggcatgatatacctctgcggtcgggcgatggtgcattccactttattgttgagatacccaaagaatcgagtgcaaagatggaggttgctaccgatgagccaaacactcccattaagcaggatacaaagaaaggaaaacttcgttactacccctacaatataaactggaattatggattgcttccacaaacatgggaagacccatcccttgccaactccgaagtggatggagcatttggtgataatgatccagttgatgttgttgagattggtgaaagtcggagaaaggttggtgaaattctcaaagtaaaacccttggctgctttagctatgattgatgaaggggaacttgactggaaaatagttgcaatttcattggatgatccaaaagcttctctggtcaatgacattgatgacgtcgagaagcatttcccggggactctcactgcaataagggactggtttagagactacaagatccctgatggaaagcctgctaacaagtttggtcttggaaacaagccagccaacaaggattatgctctcaaggtcataactgaaaccaatgaatcatgggctaaactggtcaagagatcaattcctgctggagatctgtcccttgtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

236

Amino Acids

26.2

Weight (kDa)

5.03

Isoelectric Point (pI)

37.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	504
AccIII	TCCGGA	1 cut(s)	67
AciI	CCGC	3 cut(s)	50, 53, 103
AclWI	GGATC	3 cut(s)	326, 461, 556
AcsI	RAATTY	1 cut(s)	381
AcyI	GRCGYC	1 cut(s)	501
AfiI	CCNNNNNNNGG	1 cut(s)	52
AluBI	AGCT	2 cut(s)	413, 476
AluI	AGCT	2 cut(s)	413, 476
Alw26I	GTCTC	1 cut(s)	546
AlwI	GGATC	3 cut(s)	326, 461, 556
Ama87I	CYCGRG	1 cut(s)	517
Aor13HI	TCCGGA	1 cut(s)	67
AoxI	GGCC	1 cut(s)	28
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	1 cut(s)	381
Asp700I	GAANNNNTTC	1 cut(s)	512
AsuC2I	CCSGG	3 cut(s)	47, 518, 519
AsuHPI	GGTGA	4 cut(s)	72, 335, 368, 389
AvaI	CYCGRG	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	288
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	5 cut(s)	107, 157, 295, 305, 563
BciVI	GTATCC	2 cut(s)	64, 199
BcnI	CCSGG	3 cut(s)	47, 518, 519
BcoDI	GTCTC	1 cut(s)	546
BfaI	CTAG	2 cut(s)	6, 709
BfuI	GTATCC	2 cut(s)	64, 199
BglII	AGATCT	1 cut(s)	694
BisI	GCNGC	2 cut(s)	51, 405
BlsI	GCNGC	2 cut(s)	52, 406
Bme1390I	CCNGG	3 cut(s)	47, 518, 519
BmeT110I	CYCGRG	1 cut(s)	517
BmrFI	CCNGG	3 cut(s)	47, 518, 519
BpiI	GAAGAC	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	614
BpuMI	CCSGG	3 cut(s)	47, 518, 519
BsaBI	GATNNNNATC	1 cut(s)	330
BsaHI	GRCGYC	1 cut(s)	501
BsaJI	CCNNGG	4 cut(s)	83, 399, 517, 518
BsaWI	WCCGGW	1 cut(s)	67
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	5 cut(s)	254, 335, 443, 548, 672
Bse8I	GATNNNNATC	1 cut(s)	330
BseAI	TCCGGA	1 cut(s)	67
BseDI	CCNNGG	4 cut(s)	83, 399, 517, 518
BseGI	GGATG	3 cut(s)	287, 316, 469
BseJI	GATNNNNATC	1 cut(s)	330
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseNI	ACTGG	5 cut(s)	254, 335, 443, 548, 672
BseXI	GCAGC	1 cut(s)	391
Bsh1285I	CGRYCG	1 cut(s)	107
BshFI	GGCC	1 cut(s)	30
BsiEI	CGRYCG	1 cut(s)	107
BsiHKCI	CYCGRG	1 cut(s)	517
BsiSI	CCGG	4 cut(s)	31, 47, 68, 518
BslFI	GGGAC	3 cut(s)	535, 554, 685
BslI	CCNNNNNNNGG	1 cut(s)	52
BsmAI	GTCTC	1 cut(s)	546
BsmFI	GGGAC	3 cut(s)	535, 554, 685
BsmI	GAATGC	1 cut(s)	119
BsnI	GGCC	1 cut(s)	30
BsoBI	CYCGRG	1 cut(s)	517
Bsp13I	TCCGGA	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	331, 466, 561, 677, 694
BspACI	CCGC	3 cut(s)	50, 53, 103
BspANI	GGCC	1 cut(s)	30
BspEI	TCCGGA	1 cut(s)	67
BspPI	GGATC	3 cut(s)	326, 461, 556
BsrI	ACTGG	5 cut(s)	254, 335, 443, 548, 672
BssECI	CCNNGG	4 cut(s)	83, 399, 517, 518
BssMI	GATC	5 cut(s)	331, 466, 561, 677, 694
BssNI	GRCGYC	1 cut(s)	501
BssT1I	CCWWGG	2 cut(s)	83, 399
Bst4CI	ACNGT	1 cut(s)	76
BstACI	GRCGYC	1 cut(s)	501
BstC8I	GCNNGC	2 cut(s)	579, 609
BstF5I	GGATG	3 cut(s)	287, 316, 469
BstKTI	GATC	5 cut(s)	334, 469, 564, 680, 697
BstMAI	GTCTC	1 cut(s)	546
BstMBI	GATC	5 cut(s)	331, 466, 561, 677, 694
BstMCI	CGRYCG	1 cut(s)	107
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstSCI	CCNGG	3 cut(s)	45, 516, 517
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	288
BstX2I	RGATCY	2 cut(s)	561, 694
BstXI	CCANNNNNNTGG	1 cut(s)	276
BstYI	RGATCY	2 cut(s)	561, 694
BsuI	GTATCC	2 cut(s)	64, 199
BsuRI	GGCC	1 cut(s)	30
BtgZI	GCGATG	1 cut(s)	126
BtsCI	GGATG	3 cut(s)	287, 316, 469
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	2 cut(s)	579, 609
Cfr9I	CCCGGG	1 cut(s)	517
CviAII	CATG	3 cut(s)	89, 276, 657
DpnI	GATC	5 cut(s)	333, 468, 563, 679, 696
DpnII	GATC	5 cut(s)	331, 466, 561, 677, 694
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	83, 399
Eco88I	CYCGRG	1 cut(s)	517
EcoT14I	CCWWGG	2 cut(s)	83, 399
ErhI	CCWWGG	2 cut(s)	83, 399
FaeI	CATG	3 cut(s)	92, 279, 660
FaiI	YATR	9 cut(s)	90, 95, 245, 258, 277, 416, 624, 638, 658
FalI	AAGNNNNNCTT	4 cut(s)	207, 239, 417, 449
FaqI	GGGAC	3 cut(s)	535, 554, 685
FatI	CATG	3 cut(s)	88, 275, 656
Fnu4HI	GCNGC	2 cut(s)	51, 405
FokI	GGATG	3 cut(s)	274, 323, 476
Fsp4HI	GCNGC	2 cut(s)	51, 405
FspBI	CTAG	2 cut(s)	6, 709
GluI	GCNGC	2 cut(s)	51, 405
GsuI	CTGGAG	1 cut(s)	711
HaeIII	GGCC	1 cut(s)	30
HapII	CCGG	4 cut(s)	31, 47, 68, 518
Hin1I	GRCGYC	1 cut(s)	501
Hin1II	CATG	3 cut(s)	92, 279, 660
HindIII	AAGCTT	1 cut(s)	474
HinfI	GANTC	3 cut(s)	149, 523, 653
HpaII	CCGG	4 cut(s)	31, 47, 68, 518
HphI	GGTGA	4 cut(s)	72, 335, 368, 389
Hpy188I	TCNGA	2 cut(s)	304, 366
Hpy188III	TCNNGA	3 cut(s)	68, 505, 673
Hpy99I	CGWCG	1 cut(s)	506
HpyAV	CCTTC	1 cut(s)	419
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	501
HpyCH4V	TGCA	4 cut(s)	119, 158, 452, 533
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpySE526I	ACGT	1 cut(s)	501
Hsp92I	GRCGYC	1 cut(s)	501
Hsp92II	CATG	3 cut(s)	92, 279, 660
Kpn2I	TCCGGA	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	331, 466, 561, 677, 694
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	1 cut(s)	391
MaeI	CTAG	2 cut(s)	6, 709
MaeII	ACGT	1 cut(s)	501
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	5 cut(s)	333, 468, 563, 679, 696
MboI	GATC	5 cut(s)	331, 466, 561, 677, 694
MboII	GAAGA	1 cut(s)	293
MflI	RGATCY	2 cut(s)	561, 694
MluCI	AATT	4 cut(s)	253, 381, 453, 681
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	344
MnlI	CCTC	3 cut(s)	7, 108, 160
MroI	TCCGGA	1 cut(s)	67
MroXI	GAANNNNTTC	1 cut(s)	512
MseI	TTAA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	274
MspI	CCGG	4 cut(s)	31, 47, 68, 518
MspR9I	CCNGG	3 cut(s)	47, 518, 519
Mva1269I	GAATGC	1 cut(s)	119
MwoI	GCNNNNNNNGC	1 cut(s)	410
NciI	CCSGG	3 cut(s)	47, 518, 519
NdeII	GATC	5 cut(s)	331, 466, 561, 677, 694
NlaIII	CATG	3 cut(s)	92, 279, 660
PctI	GAATGC	1 cut(s)	119
PdmI	GAANNNNTTC	1 cut(s)	512
PfeI	GAWTC	2 cut(s)	149, 653
PkrI	GCNGC	2 cut(s)	52, 406
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PsuI	RGATCY	2 cut(s)	561, 694
RseI	CAYNNNNRTG	1 cut(s)	274
SaqAI	TTAA	1 cut(s)	198
SatI	GCNGC	2 cut(s)	51, 405
Sau3AI	GATC	5 cut(s)	331, 466, 561, 677, 694
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	3 cut(s)	47, 518, 519
SetI	ASST	9 cut(s)	40, 85, 100, 171, 375, 415, 478, 504, 636
SmaI	CCCGGG	1 cut(s)	519
SmiMI	CAYNNNNRTG	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
Sse9I	AATT	4 cut(s)	253, 381, 453, 681
SsiI	CCGC	3 cut(s)	50, 53, 103
SspMI	CTAG	2 cut(s)	6, 709
StyD4I	CCNGG	3 cut(s)	45, 516, 517
StyI	CCWWGG	2 cut(s)	83, 399
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	504
TaqI	TCGA	2 cut(s)	152, 504
TasI	AATT	4 cut(s)	253, 381, 453, 681
TauI	GCSGC	1 cut(s)	53
TfiI	GAWTC	2 cut(s)	149, 653
Tru1I	TTAA	1 cut(s)	198
Tru9I	TTAA	1 cut(s)	198
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	1 cut(s)	404
TspDTI	ATGAA	3 cut(s)	438, 447, 666
TspMI	CCCGGG	1 cut(s)	517
TspRI	CASTG	1 cut(s)	535
XapI	RAATTY	1 cut(s)	381
XcmI	CCANNNNNNNNNTGG	1 cut(s)	304
XmaI	CCCGGG	1 cut(s)	517
XmnI	GAANNNNTTC	1 cut(s)	512
XspI	CTAG	2 cut(s)	6, 709
ZraI	GACGTC	1 cut(s)	502

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.