Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Forward (+)

26370158 .. 26374334

Gene Structure 4177 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG165400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGCCACCGCGAGAGTGCTCGCCGTCTCCAACAGTTCGTGCCTGCTGACCAAGACGACGTCGTTCTTGGCGAAGCAGAGGCCGTACAGGAACAATCTCCGCTTCACTACTAGAAGAGACGCGGCAGCGCCGTCATTGTCGTCGTGGAGGAGGTCCTTAACTTGCAGGGCTATCTACAACCCCGAGGTTCAGATCAAGGAGGAAGGCCTCCCCGAAACCCTAGACTACCGCGTCTTCCTCGTTGACCACTCCGGCCAGAAGGTTTCACCTTGGCATGATATACCTCTGCGCTCGGGCGATGGTGCATTCCACTTTATTGTTGAGATACCCAAAGAATCGAGTGCAAAGATGGAGGTTGCTACTGATGAGCCAAACACTCCCATTAAGCAGGATACAAAGAAAGGAAAACTTCGTTACTACCCCTACAATATAAACTGGAATTATGGATTGCTTCCACAAACATGGGAAGACCCATCCCTTGCCAACTCCGAAGTGGATGGAGCATTTGGTGATAATGATCCAGTTGATGTTGTTGAGATTGGTGAAAGTCGGAGAAAGGTTGGCGAAATTCTCAAAGTAAAACCCTTGGCTGCTTTAGCTATGATTGATGAAGGGGAACTTGACTGGAAAATAGTTGCAATTTCATTGGATGATCCAAAAGCTTCTCTGGTCAATGACATTGATGACGTCGAGAAGCATTTCCCGGGGACTCTCACTGCAATAAGGGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAGCCTGCTAACAAGTTTGGTCTTGGAAACAAGCCAGCCAACAAGGATTATGCTCTCAAGGTCATAACTGAAACCAATGAATCATGGGCTAAACTGGTCAAGAGATCAATTCCTGCTGGAGATCTGTCCCTTGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

298

Amino Acids

33.4

Weight (kDa)

6.47

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	105 - 282	5.7e-41	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AatII	GACGTC	2 cut(s)	62, 690
AccII	CGCG	3 cut(s)	11, 122, 231
AciI	CCGC	4 cut(s)	9, 100, 122, 229
AclWI	GGATC	3 cut(s)	512, 647, 742
AcoI	YGGCCR	2 cut(s)	3, 253
AcsI	RAATTY	1 cut(s)	567
AcyI	GRCGYC	2 cut(s)	59, 687
AfaI	GTAC	1 cut(s)	86
AluBI	AGCT	2 cut(s)	599, 662
AluI	AGCT	2 cut(s)	599, 662
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	3 cut(s)	31, 111, 732
AlwI	GGATC	3 cut(s)	512, 647, 742
Ama87I	CYCGRG	3 cut(s)	182, 292, 703
AoxI	GGCC	4 cut(s)	3, 80, 205, 253
ApeKI	GCWGC	2 cut(s)	125, 590
ApoI	RAATTY	1 cut(s)	567
Asp700I	GAANNNNTTC	1 cut(s)	698
AspLEI	GCGC	2 cut(s)	130, 291
AspS9I	GGNCC	1 cut(s)	153
AsuC2I	CCSGG	2 cut(s)	704, 705
AsuHPI	GGTGA	3 cut(s)	258, 521, 554
AvaI	CYCGRG	3 cut(s)	182, 292, 703
AvaII	GGWCC	1 cut(s)	153
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	226, 474
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	137, 577
BccI	CCATC	5 cut(s)	293, 343, 481, 491, 749
BceAI	ACGGC	3 cut(s)	8, 67, 115
BciVI	GTATCC	1 cut(s)	385
BcnI	CCSGG	2 cut(s)	704, 705
BcoDI	GTCTC	3 cut(s)	31, 111, 732
BfaI	CTAG	3 cut(s)	111, 221, 895
BfoI	RGCGCY	1 cut(s)	131
BfuI	GTATCC	1 cut(s)	385
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	3 cut(s)	123, 126, 591
BlsI	GCNGC	3 cut(s)	124, 127, 592
Bme1390I	CCNGG	2 cut(s)	704, 705
Bme18I	GGWCC	1 cut(s)	153
BmeT110I	CYCGRG	3 cut(s)	182, 292, 703
BmgT120I	GGNCC	1 cut(s)	153
BmrFI	CCNGG	2 cut(s)	704, 705
BpiI	GAAGAC	2 cut(s)	226, 474
BpmI	CTGGAG	1 cut(s)	897
BpuEI	CTTGAG	1 cut(s)	800
BpuMI	CCSGG	2 cut(s)	704, 705
BsaBI	GATNNNNATC	1 cut(s)	516
BsaHI	GRCGYC	2 cut(s)	59, 687
BsaJI	CCNNGG	5 cut(s)	183, 269, 585, 703, 704
Bse1I	ACTGG	5 cut(s)	440, 521, 629, 734, 858
Bse8I	GATNNNNATC	1 cut(s)	516
BseDI	CCNNGG	5 cut(s)	183, 269, 585, 703, 704
BseGI	GGATG	3 cut(s)	473, 502, 655
BseJI	GATNNNNATC	1 cut(s)	516
BseNI	ACTGG	5 cut(s)	440, 521, 629, 734, 858
BseRI	GAGGAG	1 cut(s)	163
BseXI	GCAGC	2 cut(s)	137, 577
Bsh1236I	CGCG	3 cut(s)	11, 122, 231
BshFI	GGCC	4 cut(s)	5, 82, 207, 255
BsiHKAI	GWGCWC	1 cut(s)	21
BsiHKCI	CYCGRG	3 cut(s)	182, 292, 703
BsiSI	CCGG	2 cut(s)	252, 704
BslFI	GGGAC	3 cut(s)	721, 740, 871
BsmAI	GTCTC	3 cut(s)	31, 111, 732
BsmBI	CGTCTC	2 cut(s)	31, 111
BsmFI	GGGAC	3 cut(s)	721, 740, 871
BsmI	GAATGC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	5, 82, 207, 255
BsoBI	CYCGRG	3 cut(s)	182, 292, 703
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
BspACI	CCGC	4 cut(s)	9, 100, 122, 229
BspANI	GGCC	4 cut(s)	5, 82, 207, 255
BspFNI	CGCG	3 cut(s)	11, 122, 231
BspPI	GGATC	3 cut(s)	512, 647, 742
BsrI	ACTGG	5 cut(s)	440, 521, 629, 734, 858
BssECI	CCNNGG	5 cut(s)	183, 269, 585, 703, 704
BssMI	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
BssNI	GRCGYC	2 cut(s)	59, 687
BssT1I	CCWWGG	2 cut(s)	269, 585
Bst4CI	ACNGT	1 cut(s)	35
Bst6I	CTCTTC	1 cut(s)	109
BstACI	GRCGYC	2 cut(s)	59, 687
BstC8I	GCNNGC	4 cut(s)	21, 44, 765, 795
BstF5I	GGATG	3 cut(s)	473, 502, 655
BstFNI	CGCG	3 cut(s)	11, 122, 231
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	2 cut(s)	130, 291
BstKTI	GATC	6 cut(s)	195, 520, 655, 750, 866, 883
BstMAI	GTCTC	3 cut(s)	31, 111, 732
BstMBI	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
BstMWI	GCNNNNNNNGC	1 cut(s)	596
BstSCI	CCNGG	2 cut(s)	702, 703
BstUI	CGCG	3 cut(s)	11, 122, 231
BstV1I	GCAGC	2 cut(s)	137, 577
BstV2I	GAAGAC	2 cut(s)	226, 474
BstX2I	RGATCY	2 cut(s)	747, 880
BstXI	CCANNNNNNTGG	1 cut(s)	462
BstYI	RGATCY	2 cut(s)	747, 880
BsuI	GTATCC	1 cut(s)	385
BsuRI	GGCC	4 cut(s)	5, 82, 207, 255
BtgZI	GCGATG	1 cut(s)	312
BtsCI	GGATG	3 cut(s)	473, 502, 655
BtsI	GCAGTG	1 cut(s)	714
BtsIMutI	CAGTG	1 cut(s)	714
Cac8I	GCNNGC	4 cut(s)	21, 44, 765, 795
CfoI	GCGC	2 cut(s)	130, 291
Cfr13I	GGNCC	1 cut(s)	153
Cfr9I	CCCGGG	1 cut(s)	703
CseI	GACGC	2 cut(s)	128, 220
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	275, 462, 843
CviQI	GTAC	1 cut(s)	85
DpnI	GATC	6 cut(s)	194, 519, 654, 749, 865, 882
DpnII	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	2 cut(s)	3, 253
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	269, 585
Eco147I	AGGCCT	1 cut(s)	207
Eco47I	GGWCC	1 cut(s)	153
Eco88I	CYCGRG	3 cut(s)	182, 292, 703
EcoO109I	RGGNCCY	1 cut(s)	153
EcoT14I	CCWWGG	2 cut(s)	269, 585
ErhI	CCWWGG	2 cut(s)	269, 585
Esp3I	CGTCTC	2 cut(s)	31, 111
FaeI	CATG	3 cut(s)	278, 465, 846
FaiI	YATR	9 cut(s)	276, 281, 431, 444, 463, 602, 810, 824, 844
FalI	AAGNNNNNCTT	4 cut(s)	393, 425, 603, 635
FaqI	GGGAC	3 cut(s)	721, 740, 871
FatI	CATG	3 cut(s)	274, 461, 842
Fnu4HI	GCNGC	3 cut(s)	123, 126, 591
FokI	GGATG	3 cut(s)	460, 509, 662
Fsp4HI	GCNGC	3 cut(s)	123, 126, 591
FspBI	CTAG	3 cut(s)	111, 221, 895
GlaI	GCGC	2 cut(s)	129, 290
GluI	GCNGC	3 cut(s)	123, 126, 591
GsuI	CTGGAG	1 cut(s)	897
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	4 cut(s)	5, 82, 207, 255
HapII	CCGG	2 cut(s)	252, 704
HgaI	GACGC	2 cut(s)	128, 220
HhaI	GCGC	2 cut(s)	130, 291
Hin1I	GRCGYC	2 cut(s)	59, 687
Hin1II	CATG	3 cut(s)	278, 465, 846
Hin6I	GCGC	2 cut(s)	128, 289
HinP1I	GCGC	2 cut(s)	128, 289
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	660
HinfI	GANTC	3 cut(s)	335, 709, 839
HpaII	CCGG	2 cut(s)	252, 704
HphI	GGTGA	3 cut(s)	258, 521, 554
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	3 cut(s)	192, 490, 552
Hpy188III	TCNNGA	2 cut(s)	691, 859
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	4 cut(s)	61, 64, 145, 692
HpyAV	CCTTC	3 cut(s)	197, 253, 605
HpyCH4III	ACNGT	1 cut(s)	35
HpyCH4IV	ACGT	2 cut(s)	59, 687
HpyCH4V	TGCA	5 cut(s)	165, 305, 344, 638, 719
HpyF10VI	GCNNNNNNNGC	1 cut(s)	596
HpySE526I	ACGT	2 cut(s)	59, 687
Hsp92I	GRCGYC	2 cut(s)	59, 687
Hsp92II	CATG	3 cut(s)	278, 465, 846
HspAI	GCGC	2 cut(s)	128, 289
Kzo9I	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	2 cut(s)	137, 577
MaeI	CTAG	3 cut(s)	111, 221, 895
MaeII	ACGT	2 cut(s)	59, 687
MaeIII	GTNAC	1 cut(s)	413
MalI	GATC	6 cut(s)	194, 519, 654, 749, 865, 882
MboI	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
MboII	GAAGA	3 cut(s)	126, 226, 479
MflI	RGATCY	2 cut(s)	747, 880
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	4 cut(s)	439, 567, 639, 867
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	2 cut(s)	54, 530
MnlI	CCTC	9 cut(s)	72, 141, 144, 178, 193, 218, 248, 294, 346
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	698
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	158, 384
MslI	CAYNNNNRTG	1 cut(s)	460
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	2 cut(s)	252, 704
MspR9I	CCNGG	2 cut(s)	704, 705
Mva1269I	GAATGC	1 cut(s)	305
MvnI	CGCG	3 cut(s)	11, 122, 231
MwoI	GCNNNNNNNGC	1 cut(s)	596
NciI	CCSGG	2 cut(s)	704, 705
NdeII	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
NlaIII	CATG	3 cut(s)	278, 465, 846
PceI	AGGCCT	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	68
PctI	GAATGC	1 cut(s)	305
PdmI	GAANNNNTTC	1 cut(s)	698
PfeI	GAWTC	2 cut(s)	335, 839
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	3 cut(s)	124, 127, 592
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
PpuMI	RGGWCCY	1 cut(s)	153
Psp5II	RGGWCCY	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	153
PspPPI	RGGWCCY	1 cut(s)	153
PsuI	RGATCY	2 cut(s)	747, 880
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	460
SaqAI	TTAA	2 cut(s)	158, 384
SatI	GCNGC	3 cut(s)	123, 126, 591
Sau3AI	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
Sau96I	GGNCC	1 cut(s)	153
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	704, 705
SduI	GDGCHC	1 cut(s)	21
SinI	GGWCC	1 cut(s)	153
SmaI	CCCGGG	1 cut(s)	705
SmiMI	CAYNNNNRTG	1 cut(s)	460
SmlI	CTYRAG	1 cut(s)	815
SmoI	CTYRAG	1 cut(s)	815
Sse9I	AATT	4 cut(s)	439, 567, 639, 867
SseBI	AGGCCT	1 cut(s)	207
SsiI	CCGC	4 cut(s)	9, 100, 122, 229
SspMI	CTAG	3 cut(s)	111, 221, 895
StuI	AGGCCT	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	702, 703
StyI	CCWWGG	2 cut(s)	269, 585
TaaI	ACNGT	1 cut(s)	35
TaiI	ACGT	2 cut(s)	62, 690
TaqI	TCGA	2 cut(s)	338, 690
TasI	AATT	4 cut(s)	439, 567, 639, 867
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	335, 839
Tru1I	TTAA	2 cut(s)	158, 384
Tru9I	TTAA	2 cut(s)	158, 384
TscAI	CASTG	1 cut(s)	721
TseI	GCWGC	2 cut(s)	125, 590
TspDTI	ATGAA	3 cut(s)	624, 633, 852
TspMI	CCCGGG	1 cut(s)	703
TspRI	CASTG	1 cut(s)	721
Tth111I	GACNNNGTC	1 cut(s)	58
VpaK11BI	GGWCC	1 cut(s)	153
XapI	RAATTY	1 cut(s)	567
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XmaI	CCCGGG	1 cut(s)	703
XmnI	GAANNNNTTC	1 cut(s)	698
XspI	CTAG	3 cut(s)	111, 221, 895
ZraI	GACGTC	2 cut(s)	60, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.