Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Reverse (-)

11193703 .. 11199479

Gene Structure 5777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G077800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCCACCGCGAGAGTGCTAACCGTCGCCAATACGTCCTGCTTGCTCTCCAAGACGACGTCGTTCCTTGCCAAGCAGGGGCCGTACAGCACCAGCCTCTGCTTTACCAGAAGAAGAGCAGCGTCGTCGTTGTCTTCGTCGTGCCGGAGGTCCTTCGCTTGCACAGCTATCTACAACCCCGAGGTTCAGATCAAGGAGGAAGGGCAGCCCGAAACCCTAGACTACCGAGTCTTCTTCGTCGACCGTGTTGGTCAAAAGGTTTCACCTTGGCATGATATACCTTTGCAAGTGGGTAATGGTGTATTCAACTTTGTGGTTGAAATACCCAAAGAATCGAGTGCAAAGATGGAGGTTGCTACTGATGAGCCACACACTCCGATAAAGCAGGATACAAAGAAAGGAAAACTTCGTTACTATCCCTACAATATTAATTGGAATTATGGATTGCTTCCACAAACATGGGAAGACCCATCCCTTGCTAATAGTGAAGTTGAAGGAGCATTTGGGGATAATGATCCAGTTGATGTTGTTGAGATAGGCGAAAGTCGGAGAAAGATTGGCGAGGTTCTCAAAGTAAAGCCCTTGGCTGCATTAGCTATGATTGATGAAGGGGAACTTGACTGGAAAATTGTTGCAATTTCATTGGATGATCCCAAAGCTTCTCTTGTCAATGACATTGATGATGTTGAGAAGCATTTTCCGGGGACTCTCACTGCAATAAGGGACTGGTTTAGAGACTACAAGATCCCTGATGGAAAGCCTGCTAACAAGTTTGGTCTTGGCAACAAAGCGGCAAACAAGGATTTTGCGCTTAAGGTCATAACCGAAACCAATGAATCATGGGCTAAGCTTGTCAAGAGATCAATTCCTGCTGGAGATCTGTCACTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

298

Amino Acids

32.99

Weight (kDa)

6.03

Isoelectric Point (pI)

40.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	227
AatII	GACGTC	1 cut(s)	62
AccI	GTMKAC	1 cut(s)	240
AccII	CGCG	1 cut(s)	11
AciI	CCGC	2 cut(s)	9, 791
AclWI	GGATC	3 cut(s)	509, 644, 739
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	1 cut(s)	86
AfiI	CCNNNNNNNGG	1 cut(s)	78
AflII	CTTAAG	1 cut(s)	812
AgsI	TTSAA	3 cut(s)	307, 320, 494
AjuI	GAANNNNNNNTTGG	2 cut(s)	486, 518
AluBI	AGCT	4 cut(s)	167, 596, 659, 850
AluI	AGCT	4 cut(s)	167, 596, 659, 850
Alw26I	GTCTC	1 cut(s)	729
AlwI	GGATC	3 cut(s)	509, 644, 739
AlwNI	CAGNNNCTG	1 cut(s)	99
Ama87I	CYCGRG	1 cut(s)	179
AoxI	GGCC	2 cut(s)	3, 80
ApeKI	GCWGC	3 cut(s)	119, 205, 587
AseI	ATTAAT	1 cut(s)	429
AspLEI	GCGC	1 cut(s)	811
AspS9I	GGNCC	2 cut(s)	80, 150
AsuC2I	CCSGG	1 cut(s)	702
AsuHPI	GGTGA	1 cut(s)	255
AvaI	CYCGRG	1 cut(s)	179
AvaII	GGWCC	1 cut(s)	150
BalI	TGGCCA	1 cut(s)	5
BbsI	GAAGAC	3 cut(s)	126, 223, 471
BbvI	GCAGC	3 cut(s)	131, 217, 574
BccI	CCATC	3 cut(s)	340, 478, 746
BceAI	ACGGC	1 cut(s)	67
BcgI	CGANNNNNNTGC	2 cut(s)	108, 142
BciVI	GTATCC	1 cut(s)	382
BcnI	CCSGG	1 cut(s)	702
BcoDI	GTCTC	1 cut(s)	729
BfaI	CTAG	1 cut(s)	218
BfrI	CTTAAG	1 cut(s)	812
BfuI	GTATCC	1 cut(s)	382
BglII	AGATCT	1 cut(s)	877
BisI	GCNGC	4 cut(s)	120, 206, 588, 792
BlpI	GCTNAGC	1 cut(s)	846
BlsI	GCNGC	4 cut(s)	121, 207, 589, 793
Bme1390I	CCNGG	1 cut(s)	702
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	179
BmgT120I	GGNCC	2 cut(s)	80, 150
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	1 cut(s)	702
BpiI	GAAGAC	3 cut(s)	126, 223, 471
BpmI	CTGGAG	1 cut(s)	894
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuMI	CCSGG	1 cut(s)	702
BsaBI	GATNNNNATC	1 cut(s)	513
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	4 cut(s)	180, 266, 582, 701
Bsc4I	CCNNNNNNNGG	1 cut(s)	78
Bse1I	ACTGG	3 cut(s)	518, 626, 731
Bse8I	GATNNNNATC	1 cut(s)	513
BseDI	CCNNGG	4 cut(s)	180, 266, 582, 701
BseGI	GGATG	2 cut(s)	470, 652
BseJI	GATNNNNATC	1 cut(s)	513
BseLI	CCNNNNNNNGG	1 cut(s)	78
BseNI	ACTGG	3 cut(s)	518, 626, 731
BseXI	GCAGC	3 cut(s)	131, 217, 574
Bsh1236I	CGCG	1 cut(s)	11
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	2 cut(s)	5, 82
BsiEI	CGRYCG	1 cut(s)	244
BsiHKCI	CYCGRG	1 cut(s)	179
BsiSI	CCGG	2 cut(s)	145, 701
BslFI	GGGAC	2 cut(s)	718, 737
BslI	CCNNNNNNNGG	1 cut(s)	78
BsmAI	GTCTC	1 cut(s)	729
BsmFI	GGGAC	2 cut(s)	718, 737
BsnI	GGCC	2 cut(s)	5, 82
BsoBI	CYCGRG	1 cut(s)	179
Bsp143I	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
Bsp1720I	GCTNAGC	1 cut(s)	846
BspACI	CCGC	2 cut(s)	9, 791
BspANI	GGCC	2 cut(s)	5, 82
BspFNI	CGCG	1 cut(s)	11
BspLI	GGNNCC	1 cut(s)	81
BspPI	GGATC	3 cut(s)	509, 644, 739
BspQI	GCTCTTC	1 cut(s)	109
BspTI	CTTAAG	1 cut(s)	812
BsrI	ACTGG	3 cut(s)	518, 626, 731
BssECI	CCNNGG	4 cut(s)	180, 266, 582, 701
BssMI	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	2 cut(s)	266, 582
Bst4CI	ACNGT	2 cut(s)	25, 245
Bst6I	CTCTTC	1 cut(s)	109
BstACI	GRCGYC	1 cut(s)	59
BstAFI	CTTAAG	1 cut(s)	812
BstC8I	GCNNGC	3 cut(s)	44, 160, 762
BstDEI	CTNAG	1 cut(s)	846
BstF5I	GGATG	2 cut(s)	470, 652
BstFNI	CGCG	1 cut(s)	11
BstHHI	GCGC	1 cut(s)	811
BstKTI	GATC	6 cut(s)	192, 517, 652, 747, 863, 880
BstMAI	GTCTC	1 cut(s)	729
BstMBI	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	2 cut(s)	164, 593
BstSCI	CCNGG	1 cut(s)	700
BstUI	CGCG	1 cut(s)	11
BstV1I	GCAGC	3 cut(s)	131, 217, 574
BstV2I	GAAGAC	3 cut(s)	126, 223, 471
BstX2I	RGATCY	2 cut(s)	744, 877
BstXI	CCANNNNNNTGG	1 cut(s)	459
BstYI	RGATCY	2 cut(s)	744, 877
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	5, 82
BtsCI	GGATG	2 cut(s)	470, 652
BtsI	GCAGTG	1 cut(s)	711
BtsIMutI	CAGTG	1 cut(s)	711
Cac8I	GCNNGC	3 cut(s)	44, 160, 762
CaiI	CAGNNNCTG	1 cut(s)	99
CfoI	GCGC	1 cut(s)	811
Cfr13I	GGNCC	2 cut(s)	80, 150
CseI	GACGC	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	85
CviAII	CATG	3 cut(s)	272, 459, 840
CviQI	GTAC	1 cut(s)	85
DdeI	CTNAG	1 cut(s)	846
DpnI	GATC	6 cut(s)	191, 516, 651, 746, 862, 879
DpnII	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
DrdI	GACNNNNNNGTC	1 cut(s)	227
DseDI	GACNNNNNNGTC	1 cut(s)	227
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	109
EarI	CTCTTC	1 cut(s)	109
Eco130I	CCWWGG	2 cut(s)	266, 582
Eco47I	GGWCC	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	179
EcoO109I	RGGNCCY	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	266, 582
ErhI	CCWWGG	2 cut(s)	266, 582
FaeI	CATG	3 cut(s)	275, 462, 843
FaiI	YATR	8 cut(s)	273, 278, 441, 460, 599, 821, 841, 892
FalI	AAGNNNNNCTT	6 cut(s)	390, 422, 600, 632, 648, 680
FaqI	GGGAC	2 cut(s)	718, 737
FatI	CATG	3 cut(s)	271, 458, 839
FblI	GTMKAC	1 cut(s)	240
Fnu4HI	GCNGC	4 cut(s)	120, 206, 588, 792
FokI	GGATG	2 cut(s)	457, 659
Fsp4HI	GCNGC	4 cut(s)	120, 206, 588, 792
FspBI	CTAG	1 cut(s)	218
GlaI	GCGC	1 cut(s)	810
GluI	GCNGC	4 cut(s)	120, 206, 588, 792
GsuI	CTGGAG	1 cut(s)	894
HaeIII	GGCC	2 cut(s)	5, 82
HapII	CCGG	2 cut(s)	145, 701
HgaI	GACGC	1 cut(s)	111
HhaI	GCGC	1 cut(s)	811
Hin1I	GRCGYC	1 cut(s)	59
Hin1II	CATG	3 cut(s)	275, 462, 843
Hin6I	GCGC	1 cut(s)	809
HinP1I	GCGC	1 cut(s)	809
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HindIII	AAGCTT	2 cut(s)	657, 848
HinfI	GANTC	4 cut(s)	228, 332, 706, 836
HpaII	CCGG	2 cut(s)	145, 701
HphI	GGTGA	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	3 cut(s)	189, 378, 549
Hpy188III	TCNNGA	1 cut(s)	856
Hpy8I	GTNNAC	1 cut(s)	241
Hpy99I	CGWCG	7 cut(s)	29, 61, 64, 127, 130, 142, 242
HpyAV	CCTTC	4 cut(s)	163, 194, 488, 602
HpyCH4III	ACNGT	2 cut(s)	25, 245
HpyCH4IV	ACGT	2 cut(s)	35, 59
HpyCH4V	TGCA	7 cut(s)	162, 286, 341, 590, 635, 716, 890
HpyF10VI	GCNNNNNNNGC	2 cut(s)	164, 593
HpyF3I	CTNAG	1 cut(s)	846
HpySE526I	ACGT	2 cut(s)	35, 59
Hsp92I	GRCGYC	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	275, 462, 843
HspAI	GCGC	1 cut(s)	809
Kzo9I	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
LguI	GCTCTTC	1 cut(s)	109
LmnI	GCTCC	1 cut(s)	497
Lsp1109I	GCAGC	3 cut(s)	131, 217, 574
MaeI	CTAG	1 cut(s)	218
MaeII	ACGT	2 cut(s)	35, 59
MaeIII	GTNAC	2 cut(s)	410, 882
MalI	GATC	6 cut(s)	191, 516, 651, 746, 862, 879
MboI	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
MboII	GAAGA	6 cut(s)	123, 126, 126, 223, 226, 476
MflI	RGATCY	2 cut(s)	744, 877
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	430, 436, 627, 636, 864
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	237, 700
MmeI	TCCRAC	1 cut(s)	527
MnlI	CCTC	6 cut(s)	107, 141, 175, 190, 343, 556
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	2 cut(s)	429, 813
MslI	CAYNNNNRTG	1 cut(s)	457
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	812
MspI	CCGG	2 cut(s)	145, 701
MspR9I	CCNGG	1 cut(s)	702
MvnI	CGCG	1 cut(s)	11
MwoI	GCNNNNNNNGC	2 cut(s)	164, 593
NciI	CCSGG	1 cut(s)	702
NdeII	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
NlaIII	CATG	3 cut(s)	275, 462, 843
NlaIV	GGNNCC	1 cut(s)	81
NmuCI	GTSAC	1 cut(s)	882
PciSI	GCTCTTC	1 cut(s)	109
PcsI	WCGNNNNNNNCGW	1 cut(s)	134
PfeI	GAWTC	2 cut(s)	332, 836
PflFI	GACNNNGTC	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	121, 207, 589, 793
PleI	GAGTC	2 cut(s)	236, 700
PpsI	GAGTC	2 cut(s)	236, 700
PpuMI	RGGWCCY	1 cut(s)	150
PshBI	ATTAAT	1 cut(s)	429
Psp5II	RGGWCCY	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	81
PspPI	GGNCC	2 cut(s)	80, 150
PspPPI	RGGWCCY	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	99
PsuI	RGATCY	2 cut(s)	744, 877
PsyI	GACNNNGTC	1 cut(s)	58
RsaI	GTAC	1 cut(s)	86
RsaNI	GTAC	1 cut(s)	85
RseI	CAYNNNNRTG	1 cut(s)	457
SalI	GTCGAC	1 cut(s)	239
SapI	GCTCTTC	1 cut(s)	109
SaqAI	TTAA	2 cut(s)	429, 813
SatI	GCNGC	4 cut(s)	120, 206, 588, 792
Sau3AI	GATC	6 cut(s)	189, 514, 649, 744, 860, 877
Sau96I	GGNCC	2 cut(s)	80, 150
SchI	GAGTC	2 cut(s)	237, 700
ScrFI	CCNGG	1 cut(s)	702
SinI	GGWCC	1 cut(s)	150
SmiMI	CAYNNNNRTG	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	812
SmoI	CTYRAG	1 cut(s)	812
Sse9I	AATT	5 cut(s)	430, 436, 627, 636, 864
SsiI	CCGC	2 cut(s)	9, 791
SspI	AATATT	1 cut(s)	427
SspMI	CTAG	1 cut(s)	218
StyD4I	CCNGG	1 cut(s)	700
StyI	CCWWGG	2 cut(s)	266, 582
TaaI	ACNGT	2 cut(s)	25, 245
TaiI	ACGT	2 cut(s)	38, 62
TaqI	TCGA	2 cut(s)	240, 335
TasI	AATT	5 cut(s)	430, 436, 627, 636, 864
TauI	GCSGC	1 cut(s)	794
TfiI	GAWTC	2 cut(s)	332, 836
Tru1I	TTAA	2 cut(s)	429, 813
Tru9I	TTAA	2 cut(s)	429, 813
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	1 cut(s)	882
TseI	GCWGC	3 cut(s)	119, 205, 587
Tsp45I	GTSAC	1 cut(s)	882
TspDTI	ATGAA	3 cut(s)	621, 630, 849
TspRI	CASTG	1 cut(s)	718
Tth111I	GACNNNGTC	1 cut(s)	58
Vha464I	CTTAAG	1 cut(s)	812
VpaK11BI	GGWCC	1 cut(s)	150
VspI	ATTAAT	1 cut(s)	429
XmiI	GTMKAC	1 cut(s)	240
XspI	CTAG	1 cut(s)	218
ZraI	GACGTC	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.