Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0009636

Physical Location & Seq

Genomic Coordinates Forward (+)

31599957 .. 31603963

Gene Structure 4007 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1246600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGTTTTTATACATATGTATATTCAATTTTTTCAGTAATTATAATGGAAGGTTCTACAGGCATAGGAACTGTGTTTCGCCTTGGCATGATATACCTATGCAAGTGGGTGATGGTGTGTTCAACTTAGTGGTTGAAATACCCAAAGAATCAAGTGCAAAGATGGAGGTTGCTACTGATGAGCCACACACTCCGATAAAGCAGGATACAATCATACAAAGAAGGGGAAACTTCGTTACTACCCACGCAAGCCACTGTTGGTACAATGTAAATTGGAACTACGGGTTGCTTCCGCAAACATGGGAAGACCCAACCGTTGCTAACGCTGAAGTTGAAGGAGCCCTTGGGGATAATGATCCAGTTGATGTTGTTGAGATAGGCGATGGTCAGAGAAGGATTGGCGAGATTCTCAAAGTAAAGCCTTTGGCTGCTTTAGCTATGATTGATGAAGGGGAACTTGACTGGAAAATTATTGCAATTTCATTGGATGATCCAAGGGCTTCTCTCGTTAATGACATTGATGATGTTGAGAAGCATTTCCCGGGGACTCTCACTGCAATAAGGGACTGGTTTAGAGACTACAAGATACCAGATGGAAAGCCTGCTAACAAGTTTGGTCTTGGCAACAAAGCAGCAAACAAGGATTATGCTCTTAAGGTCATAACCGAAACCAATGAATCATGGGCTAAGCTTGTCAAGAGATCGATTCCTGCTGAAGATCTGGCACTTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004427 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006950 GO:0006952 GO:0006970 GO:0008150 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009941 GO:0010035 GO:0010038 GO:0010876 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0019915 GO:0031967 GO:0031975 GO:0033036 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0050896 GO:0051179 GO:0051235 GO:0051704 GO:0051707 GO:0065007 GO:0065008 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko00190 map00190

Pfam Domains

Protein Families

Pyrophosphatase

Protein Analysis

244

Amino Acids

27.44

Weight (kDa)

5.08

Isoelectric Point (pI)

28.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pyrophosphatase	PF00719	43 - 227	1e-41	Inorganic pyrophosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0009636)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G09650
fragaria_vesca	FvH4_2g10920
malus_domestica	MD05G1051000.v1.1 MD09G1246600.v1.1 MD10G1058400.v1.1 MD17G1239600.v1.1
prunus_persica	Prupe.8G077800_v2.0.a1 Prupe.8G077800_v2.0.a1
pyrus_communis	pycom05g04310 pycom10g04510 pycom17g24300
rosa_chinensis	RchiOBHm_Chr6g0269081
rosa_laevigata	RLG00000013885
rosa_multiflora	Rmu_sc0032469.1_g000006 Rmu_ssc0000381.1_g000036
rosa_roxburghii	Rroxscaffold_7G00199040
rosa_rugosa	Rorug06G0044700
rosa_samantha	Rh6AG165400 Rh6CG164300 Rh6DG155900
rosa_wichuraiana	Rw6G014230 Rw6G014250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	42
AciI	CCGC	1 cut(s)	290
AclWI	GGATC	2 cut(s)	347, 482
AcuI	CTGAAG	2 cut(s)	345, 732
AfaI	GTAC	1 cut(s)	260
AflII	CTTAAG	1 cut(s)	650
AgsI	TTSAA	4 cut(s)	25, 121, 134, 332
AjuI	GAANNNNNNNTTGG	2 cut(s)	324, 356
AluBI	AGCT	2 cut(s)	434, 688
AluI	AGCT	2 cut(s)	434, 688
Alw26I	GTCTC	1 cut(s)	567
AlwI	GGATC	2 cut(s)	347, 482
Ama87I	CYCGRG	1 cut(s)	538
ApeKI	GCWGC	2 cut(s)	425, 629
Asp700I	GAANNNNTTC	1 cut(s)	533
AsuC2I	CCSGG	2 cut(s)	539, 540
AsuHPI	GGTGA	1 cut(s)	119
AvaI	CYCGRG	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	412, 641
BccI	CCATC	4 cut(s)	104, 154, 374, 584
BciVI	GTATCC	1 cut(s)	196
BcnI	CCSGG	2 cut(s)	539, 540
BcoDI	GTCTC	1 cut(s)	567
BfmI	CTRYAG	1 cut(s)	55
BfrI	CTTAAG	1 cut(s)	650
BfuI	GTATCC	1 cut(s)	196
BglII	AGATCT	1 cut(s)	715
BisI	GCNGC	2 cut(s)	426, 630
BlpI	GCTNAGC	1 cut(s)	684
BlsI	GCNGC	2 cut(s)	427, 631
Bme1390I	CCNGG	2 cut(s)	539, 540
BmeT110I	CYCGRG	1 cut(s)	538
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	2 cut(s)	539, 540
BpiI	GAAGAC	1 cut(s)	309
Bpu1102I	GCTNAGC	1 cut(s)	684
BpuMI	CCSGG	2 cut(s)	539, 540
Bsa29I	ATCGAT	1 cut(s)	701
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	5 cut(s)	80, 340, 491, 538, 539
Bse1I	ACTGG	3 cut(s)	356, 464, 569
Bse8I	GATNNNNATC	1 cut(s)	351
BseCI	ATCGAT	1 cut(s)	701
BseDI	CCNNGG	5 cut(s)	80, 340, 491, 538, 539
BseGI	GGATG	1 cut(s)	490
BseJI	GATNNNNATC	1 cut(s)	351
BseNI	ACTGG	3 cut(s)	356, 464, 569
BseXI	GCAGC	2 cut(s)	412, 641
BshVI	ATCGAT	1 cut(s)	701
BsiHKCI	CYCGRG	1 cut(s)	538
BsiSI	CCGG	1 cut(s)	539
BslFI	GGGAC	2 cut(s)	556, 575
BsmAI	GTCTC	1 cut(s)	567
BsmFI	GGGAC	2 cut(s)	556, 575
BsoBI	CYCGRG	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	340
Bsp143I	GATC	4 cut(s)	352, 487, 698, 715
Bsp1720I	GCTNAGC	1 cut(s)	684
BspACI	CCGC	1 cut(s)	290
BspDI	ATCGAT	1 cut(s)	701
BspLI	GGNNCC	1 cut(s)	337
BspPI	GGATC	2 cut(s)	347, 482
BspTI	CTTAAG	1 cut(s)	650
BsrI	ACTGG	3 cut(s)	356, 464, 569
BssECI	CCNNGG	5 cut(s)	80, 340, 491, 538, 539
BssMI	GATC	4 cut(s)	352, 487, 698, 715
BssT1I	CCWWGG	3 cut(s)	80, 340, 491
Bst4CI	ACNGT	3 cut(s)	71, 254, 313
BstAFI	CTTAAG	1 cut(s)	650
BstC8I	GCNNGC	2 cut(s)	247, 600
BstDEI	CTNAG	2 cut(s)	124, 684
BstF5I	GGATG	1 cut(s)	490
BstKTI	GATC	4 cut(s)	355, 490, 701, 718
BstMAI	GTCTC	1 cut(s)	567
BstMBI	GATC	4 cut(s)	352, 487, 698, 715
BstMWI	GCNNNNNNNGC	1 cut(s)	431
BstSCI	CCNGG	2 cut(s)	537, 538
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	412, 641
BstV2I	GAAGAC	1 cut(s)	309
BstX2I	RGATCY	1 cut(s)	715
BstYI	RGATCY	1 cut(s)	715
Bsu15I	ATCGAT	1 cut(s)	701
BsuI	GTATCC	1 cut(s)	196
BsuTUI	ATCGAT	1 cut(s)	701
BtgZI	GCGATG	1 cut(s)	393
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	549
BtsIMutI	CAGTG	2 cut(s)	250, 549
Cac8I	GCNNGC	2 cut(s)	247, 600
Cfr9I	CCCGGG	1 cut(s)	538
ClaI	ATCGAT	1 cut(s)	701
Csp6I	GTAC	1 cut(s)	259
CviAII	CATG	3 cut(s)	86, 297, 678
CviQI	GTAC	1 cut(s)	259
DdeI	CTNAG	2 cut(s)	124, 684
DpnI	GATC	4 cut(s)	354, 489, 700, 717
DpnII	GATC	4 cut(s)	352, 487, 698, 715
Eco130I	CCWWGG	3 cut(s)	80, 340, 491
Eco24I	GRGCYC	1 cut(s)	340
Eco57I	CTGAAG	2 cut(s)	345, 732
Eco88I	CYCGRG	1 cut(s)	538
EcoT14I	CCWWGG	3 cut(s)	80, 340, 491
EcoT38I	GRGCYC	1 cut(s)	340
ErhI	CCWWGG	3 cut(s)	80, 340, 491
FaeI	CATG	3 cut(s)	89, 300, 681
FalI	AAGNNNNNCTT	4 cut(s)	324, 356, 438, 470
FaqI	GGGAC	2 cut(s)	556, 575
FatI	CATG	3 cut(s)	85, 296, 677
FauNDI	CATATG	1 cut(s)	14
Fnu4HI	GCNGC	2 cut(s)	426, 630
FokI	GGATG	1 cut(s)	497
FriOI	GRGCYC	1 cut(s)	340
Fsp4HI	GCNGC	2 cut(s)	426, 630
GluI	GCNGC	2 cut(s)	426, 630
HapII	CCGG	1 cut(s)	539
Hin1II	CATG	3 cut(s)	89, 300, 681
HindIII	AAGCTT	1 cut(s)	686
HinfI	GANTC	5 cut(s)	146, 403, 544, 674, 703
HpaII	CCGG	1 cut(s)	539
HphI	GGTGA	1 cut(s)	119
Hpy188I	TCNGA	2 cut(s)	192, 387
Hpy188III	TCNNGA	1 cut(s)	694
HpyAV	CCTTC	5 cut(s)	42, 213, 326, 384, 440
HpyCH4III	ACNGT	3 cut(s)	71, 254, 313
HpyCH4V	TGCA	5 cut(s)	100, 155, 473, 554, 728
HpyF10VI	GCNNNNNNNGC	1 cut(s)	431
HpyF3I	CTNAG	2 cut(s)	124, 684
Hsp92II	CATG	3 cut(s)	89, 300, 681
Kzo9I	GATC	4 cut(s)	352, 487, 698, 715
LmnI	GCTCC	1 cut(s)	335
Lsp1109I	GCAGC	2 cut(s)	412, 641
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	4 cut(s)	354, 489, 700, 717
MboI	GATC	4 cut(s)	352, 487, 698, 715
MboII	GAAGA	2 cut(s)	314, 725
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	1 cut(s)	340
MluCI	AATT	5 cut(s)	25, 37, 268, 465, 474
MlyI	GAGTC	1 cut(s)	538
MnlI	CCTC	1 cut(s)	157
MroXI	GAANNNNTTC	1 cut(s)	533
MseI	TTAA	2 cut(s)	507, 651
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	1 cut(s)	539
MspR9I	CCNGG	2 cut(s)	539, 540
MwoI	GCNNNNNNNGC	1 cut(s)	431
NciI	CCSGG	2 cut(s)	539, 540
NdeI	CATATG	1 cut(s)	14
NdeII	GATC	4 cut(s)	352, 487, 698, 715
NlaIII	CATG	3 cut(s)	89, 300, 681
NlaIV	GGNNCC	1 cut(s)	337
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	4 cut(s)	146, 403, 674, 703
PkrI	GCNGC	2 cut(s)	427, 631
PleI	GAGTC	1 cut(s)	538
PpsI	GAGTC	1 cut(s)	538
PsiI	TTATAA	1 cut(s)	42
PspN4I	GGNNCC	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	715
RsaI	GTAC	1 cut(s)	260
RsaNI	GTAC	1 cut(s)	259
SaqAI	TTAA	2 cut(s)	507, 651
SatI	GCNGC	2 cut(s)	426, 630
Sau3AI	GATC	4 cut(s)	352, 487, 698, 715
SchI	GAGTC	1 cut(s)	538
ScrFI	CCNGG	2 cut(s)	539, 540
SduI	GDGCHC	1 cut(s)	340
SetI	ASST	6 cut(s)	53, 97, 168, 436, 657, 690
SfcI	CTRYAG	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	540
SmlI	CTYRAG	1 cut(s)	650
SmoI	CTYRAG	1 cut(s)	650
Sse9I	AATT	5 cut(s)	25, 37, 268, 465, 474
SsiI	CCGC	1 cut(s)	290
StyD4I	CCNGG	2 cut(s)	537, 538
StyI	CCWWGG	3 cut(s)	80, 340, 491
TaaI	ACNGT	3 cut(s)	71, 254, 313
TaqI	TCGA	1 cut(s)	701
TasI	AATT	5 cut(s)	25, 37, 268, 465, 474
TfiI	GAWTC	4 cut(s)	146, 403, 674, 703
Tru1I	TTAA	2 cut(s)	507, 651
Tru9I	TTAA	2 cut(s)	507, 651
TscAI	CASTG	2 cut(s)	257, 556
TseI	GCWGC	2 cut(s)	425, 629
TspDTI	ATGAA	3 cut(s)	459, 468, 687
TspMI	CCCGGG	1 cut(s)	538
TspRI	CASTG	2 cut(s)	257, 556
Vha464I	CTTAAG	1 cut(s)	650
XmaI	CCCGGG	1 cut(s)	538
XmnI	GAANNNNTTC	1 cut(s)	533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.