FvH4_2g13080

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
11471332 .. 11473196
1865 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13080.t1

Sequence Viewer

Length: 246 bp
ATGTGTCGGTATCAAGCGTGGGAAGATGATTCCCTACAGAGTGAAGATCTTATACAAAGCACTACAGATGGCATAGATGTTACAGGAACAAGGTTGGCTGCGAGACTGGCAAATTTGGAAGAGCGGATGACACGAGTGGAGGCTAGGGTGGAGAGACTCGAGGCAAGGATGTTATATCTGCAAAAAGGAATGCGTTTTGTTTGTGTGCTGTTTCTGGTTACTCTTGTATATGCAATATGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.49

Weight (kDa)

5.36

Isoelectric Point (pI)

34.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 124
AciI CCGC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 112
Alw26I GTCTC 2 cut(s) 97, 148
Ama87I CYCGRG 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 158
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BauI CACGAG 1 cut(s) 132
BbvI GCAGC 1 cut(s) 85
BccI CCATC 1 cut(s) 62
BcoDI GTCTC 2 cut(s) 97, 148
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 2 cut(s) 35, 63
BglII AGATCT 1 cut(s) 46
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 158
Bse1I ACTGG 1 cut(s) 111
BseGI GGATG 2 cut(s) 132, 174
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 85
BsiHKCI CYCGRG 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 97, 148
BsmI GAATGC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 158
Bsp143I GATC 1 cut(s) 46
BspACI CCGC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 111
BssMI GATC 1 cut(s) 46
BssSI CACGAG 1 cut(s) 132
Bst2BI CACGAG 1 cut(s) 132
Bst6I CTCTTC 1 cut(s) 114
BstF5I GGATG 2 cut(s) 132, 174
BstKTI GATC 1 cut(s) 49
BstMAI GTCTC 2 cut(s) 97, 148
BstMBI GATC 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstSFI CTRYAG 2 cut(s) 35, 63
BstV1I GCAGC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BtsCI GGATG 2 cut(s) 132, 174
CviJI RGCY 2 cut(s) 98, 143
CviKI_1 RGCY 2 cut(s) 98, 143
DpnI GATC 1 cut(s) 48
DpnII GATC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 158
FaiI YATR 6 cut(s) 53, 74, 175, 229, 231, 238
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 139, 181
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 99
HinfI GANTC 2 cut(s) 29, 156
HpyCH4V TGCA 2 cut(s) 181, 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
Kzo9I GATC 1 cut(s) 46
LguI GCTCTTC 1 cut(s) 114
LpnPI CCDG 3 cut(s) 69, 92, 200
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 79, 217
MalI GATC 1 cut(s) 48
MbiI CCGCTC 1 cut(s) 124
MboI GATC 1 cut(s) 46
MboII GAAGA 3 cut(s) 35, 56, 131
MflI RGATCY 1 cut(s) 46
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 2 cut(s) 133, 154
Mva1269I GAATGC 1 cut(s) 195
MwoI GCNNNNNNNGC 1 cut(s) 107
NdeII GATC 1 cut(s) 46
PaeR7I CTCGAG 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 114
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PspXI VCTCGAGB 1 cut(s) 158
PsuI RGATCY 1 cut(s) 46
SapI GCTCTTC 1 cut(s) 114
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 46
SchI GAGTC 1 cut(s) 150
SetI ASST 1 cut(s) 95
SfcI CTRYAG 2 cut(s) 35, 63
Sfr274I CTCGAG 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 112
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 144
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 112
TfiI GAWTC 1 cut(s) 29
TseI GCWGC 1 cut(s) 98
XapI RAATTY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 158
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.