MD10G1033700.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
4361481 .. 4362791
1311 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1033700.v1.1.491

Sequence Viewer

Length: 246 bp
ATGTGTAACTATCAAGCTTGGGAAGACGATTCTCTGCAGGGTGAAGATTATGCACAGAGCACGGCAGATGGCGTAGATGTTGGGGAGACAAGGTGGGGAGCACGGCTGGCAATGTTGGAAGCGCGGATAGCTCGAGTGGAGGCTAGGGTGGAAAAACTGGAGGCAAAGATGCTGTATCTGCAAAAGGGAATGCGTGTTGTTTGCGCGCTGTTTCTGGTTACTCTTATCTATGCAGTTGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.16

Weight (kDa)

5.02

Isoelectric Point (pI)

34.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0015538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 124, 206
AciI CCGC 1 cut(s) 124
AluBI AGCT 2 cut(s) 17, 131
AluI AGCT 2 cut(s) 17, 131
Alw21I GWGCWC 2 cut(s) 62, 103
Alw26I GTCTC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 132
AspLEI GCGC 3 cut(s) 124, 206, 208
AsuHPI GGTGA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 2 cut(s) 62, 103
BccI CCATC 1 cut(s) 62
BceAI ACGGC 2 cut(s) 78, 119
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 35
BmeT110I CYCGRG 1 cut(s) 132
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 162
BsePI GCGCGC 1 cut(s) 204
Bsh1236I CGCG 2 cut(s) 124, 206
BsiHKAI GWGCWC 2 cut(s) 62, 103
BsiHKCI CYCGRG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 62, 103
BspACI CCGC 1 cut(s) 124
BspFNI CGCG 2 cut(s) 124, 206
BspMAI CTGCAG 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 1 cut(s) 162
BssHII GCGCGC 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 108, 206
BstFNI CGCG 2 cut(s) 124, 206
BstHHI GCGC 3 cut(s) 124, 206, 208
BstMAI GTCTC 1 cut(s) 80
BstMWI GCNNNNNNNGC 3 cut(s) 107, 128, 178
BstSFI CTRYAG 1 cut(s) 35
BstUI CGCG 2 cut(s) 124, 206
BstV2I GAAGAC 1 cut(s) 30
Cac8I GCNNGC 2 cut(s) 108, 206
CfoI GCGC 3 cut(s) 124, 206, 208
CviJI RGCY 4 cut(s) 17, 106, 131, 143
CviKI_1 RGCY 4 cut(s) 17, 106, 131, 143
Eco88I CYCGRG 1 cut(s) 132
FaiI YATR 2 cut(s) 51, 231
FspBI CTAG 1 cut(s) 144
GlaI GCGC 3 cut(s) 123, 205, 207
GsuI CTGGAG 1 cut(s) 179
HhaI GCGC 3 cut(s) 124, 206, 208
Hin6I GCGC 3 cut(s) 122, 204, 206
HinP1I GCGC 3 cut(s) 122, 204, 206
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 1 cut(s) 29
HphI GGTGA 1 cut(s) 53
HpyCH4V TGCA 4 cut(s) 37, 53, 181, 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 128, 178
HspAI GCGC 3 cut(s) 122, 204, 206
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 4 cut(s) 23, 92, 143, 200
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 5, 217
MboII GAAGA 2 cut(s) 35, 56
MhlI GDGCHC 2 cut(s) 62, 103
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 2 cut(s) 133, 154
Mva1269I GAATGC 1 cut(s) 195
MvnI CGCG 2 cut(s) 124, 206
MwoI GCNNNNNNNGC 3 cut(s) 107, 128, 178
PaeR7I CTCGAG 1 cut(s) 132
PauI GCGCGC 1 cut(s) 204
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 29
PspXI VCTCGAGB 1 cut(s) 132
PstI CTGCAG 1 cut(s) 39
PteI GCGCGC 1 cut(s) 204
SduI GDGCHC 2 cut(s) 62, 103
SetI ASST 3 cut(s) 19, 95, 133
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 35
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 144
TaqI TCGA 1 cut(s) 133
TfiI GAWTC 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 132
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.