Rh6BG200400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0015538
Physical Location & Seq
Reverse (-)
37709088 .. 37735190
26103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG200400.1

Sequence Viewer

Length: 438 bp
ATGTGGCGAAGCATAGCGGAGGGAGGAGAAGATAGCGAGGATGAGACAGAGGGAGGAGGAAAAGAGGAGAATATAGGGGCTGCACTGGGTCTCAACCCAGATTCCTTCTCTCTCGTTTCAAGCAAACTACTCAACGAATACCTGAGATCACATCTAACTATACATAACAGTAAGGGATTTTTGTCTGGTGAAATGTGTAGGTATCAAGCCTGGGAAGATGATTCACTACAGAGCGAAGATTTTATACAAAGTACTCCAGATGGCGTAGATGTTACAGGGACAAGGTGGGCAGTGAGACTGGCAAATTTGGAAGAGCGGATGACAAGAGTGGAGGCTAGGGTGGAAAGACTCGAGGCAAGGATGTTATATCTGCAAAAAGGAATGCGTGTTGTTTGCGTGCTGTTTCTGGTCACTCTTGTGTATGCAATATGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.34

Weight (kDa)

4.81

Isoelectric Point (pI)

48.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13080
malus_domestica MD10G1033700.v1.1
prunus_persica Prupe.8G039700_v2.0.a1
pyrus_communis pycom05g02370
rosa_chinensis RchiOBHm_Chr6g0274341
rosa_laevigata RLG00000013551
rosa_multiflora Rmu_sc0006675.1_g000001 Rmu_sc0007877.1_g000027
rosa_roxburghii Rroxscaffold_7G00194340
rosa_rugosa Rorug06G0080900 Rorug06G0081000.1 Rorug06G0081100
rosa_samantha Rh6AG196200 Rh6BG200400 Rh6CG201300 Rh6DG192100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 316
AciI CCGC 2 cut(s) 17, 316
AcsI RAATTY 1 cut(s) 304
AfaI GTAC 1 cut(s) 253
AgsI TTSAA 1 cut(s) 120
AjnI CCWGG 1 cut(s) 209
AleI CACNNNNGTG 1 cut(s) 416
Alw26I GTCTC 3 cut(s) 38, 95, 289
Ama87I CYCGRG 1 cut(s) 350
ApeKI GCWGC 1 cut(s) 80
ApoI RAATTY 1 cut(s) 304
AsuHPI GGTGA 1 cut(s) 200
AvaI CYCGRG 1 cut(s) 350
BarI GAAGNNNNNNTAC 2 cut(s) 228, 260
BbvI GCAGC 1 cut(s) 67
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 211
BcoDI GTCTC 3 cut(s) 38, 95, 289
BfaI CTAG 1 cut(s) 336
BfmI CTRYAG 1 cut(s) 227
BisI GCNGC 1 cut(s) 81
BlsI GCNGC 1 cut(s) 82
BmcAI AGTACT 1 cut(s) 253
Bme1390I CCNGG 1 cut(s) 211
BmeT110I CYCGRG 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 211
BmrI ACTGGG 1 cut(s) 95
BmuI ACTGGG 1 cut(s) 95
BpmI CTGGAG 1 cut(s) 240
BsaI GGTCTC 1 cut(s) 95
BsaJI CCNNGG 1 cut(s) 210
Bse1I ACTGG 2 cut(s) 90, 303
BseBI CCWGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 210
BseGI GGATG 3 cut(s) 46, 324, 366
BseMII CTCAG 1 cut(s) 134
BseNI ACTGG 2 cut(s) 90, 303
BseRI GAGGAG 3 cut(s) 39, 69, 80
BseXI GCAGC 1 cut(s) 67
BsgI GTGCAG 1 cut(s) 66
BsiHKCI CYCGRG 1 cut(s) 350
BslFI GGGAC 1 cut(s) 292
BsmAI GTCTC 3 cut(s) 38, 95, 289
BsmFI GGGAC 1 cut(s) 292
BsmI GAATGC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 95
BsoBI CYCGRG 1 cut(s) 350
Bsp143I GATC 1 cut(s) 146
BspACI CCGC 2 cut(s) 17, 316
BspCNI CTCAG 1 cut(s) 135
BspQI GCTCTTC 1 cut(s) 306
BspTNI GGTCTC 1 cut(s) 95
BsrBI CCGCTC 1 cut(s) 316
BsrI ACTGG 2 cut(s) 90, 303
BssECI CCNNGG 1 cut(s) 210
BssMI GATC 1 cut(s) 146
Bst2UI CCWGG 1 cut(s) 211
Bst4CI ACNGT 1 cut(s) 170
Bst6I CTCTTC 1 cut(s) 306
BstC8I GCNNGC 1 cut(s) 398
BstDEI CTNAG 1 cut(s) 143
BstF5I GGATG 3 cut(s) 46, 324, 366
BstKTI GATC 1 cut(s) 149
BstMAI GTCTC 3 cut(s) 38, 95, 289
BstMBI GATC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 211
BstSCI CCNGG 1 cut(s) 209
BstSFI CTRYAG 1 cut(s) 227
BstV1I GCAGC 1 cut(s) 67
BtsCI GGATG 3 cut(s) 46, 324, 366
BtsI GCAGTG 1 cut(s) 297
BtsIMutI CAGTG 2 cut(s) 83, 297
Cac8I GCNNGC 1 cut(s) 398
Csp6I GTAC 1 cut(s) 252
CviJI RGCY 3 cut(s) 80, 209, 335
CviKI_1 RGCY 3 cut(s) 80, 209, 335
CviQI GTAC 1 cut(s) 252
DdeI CTNAG 1 cut(s) 143
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 306
EarI CTCTTC 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 95
Eco88I CYCGRG 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 209
FaiI YATR 8 cut(s) 14, 74, 161, 165, 245, 367, 423, 430
FaqI GGGAC 1 cut(s) 292
Fnu4HI GCNGC 1 cut(s) 81
FokI GGATG 3 cut(s) 53, 331, 373
Fsp4HI GCNGC 1 cut(s) 81
FspBI CTAG 1 cut(s) 336
GluI GCNGC 1 cut(s) 81
GsuI CTGGAG 1 cut(s) 240
HinfI GANTC 3 cut(s) 101, 221, 348
HphI GGTGA 1 cut(s) 200
Hpy188III TCNNGA 1 cut(s) 257
HpyAV CCTTC 1 cut(s) 115
HpyCH4III ACNGT 1 cut(s) 170
HpyCH4V TGCA 4 cut(s) 83, 373, 425, 432
HpyF3I CTNAG 1 cut(s) 143
Kzo9I GATC 1 cut(s) 146
LguI GCTCTTC 1 cut(s) 306
Lsp1109I GCAGC 1 cut(s) 67
MaeI CTAG 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 271, 409
MalI GATC 1 cut(s) 148
MbiI CCGCTC 1 cut(s) 316
MboI GATC 1 cut(s) 146
MboII GAAGA 4 cut(s) 41, 227, 248, 323
MluCI AATT 1 cut(s) 304
MlyI GAGTC 1 cut(s) 342
MnlI CCTC 9 cut(s) 13, 17, 31, 43, 47, 50, 58, 325, 346
MslI CAYNNNNRTG 1 cut(s) 416
MspR9I CCNGG 1 cut(s) 211
Mva1269I GAATGC 1 cut(s) 387
MvaI CCWGG 1 cut(s) 211
NdeII GATC 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 409
OliI CACNNNNGTG 1 cut(s) 416
PaeR7I CTCGAG 1 cut(s) 350
PciSI GCTCTTC 1 cut(s) 306
PctI GAATGC 1 cut(s) 387
PfeI GAWTC 2 cut(s) 101, 221
PkrI GCNGC 1 cut(s) 82
PleI GAGTC 1 cut(s) 342
PpsI GAGTC 1 cut(s) 342
Psp6I CCWGG 1 cut(s) 209
PspGI CCWGG 1 cut(s) 209
PspXI VCTCGAGB 1 cut(s) 350
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 1 cut(s) 416
SapI GCTCTTC 1 cut(s) 306
SatI GCNGC 1 cut(s) 81
Sau3AI GATC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 253
SchI GAGTC 1 cut(s) 342
ScrFI CCNGG 1 cut(s) 211
SetI ASST 3 cut(s) 144, 203, 287
SfcI CTRYAG 1 cut(s) 227
Sfr274I CTCGAG 1 cut(s) 350
SlaI CTCGAG 1 cut(s) 350
SmiMI CAYNNNNRTG 1 cut(s) 416
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 1 cut(s) 304
SsiI CCGC 2 cut(s) 17, 316
SspMI CTAG 1 cut(s) 336
StyD4I CCNGG 1 cut(s) 209
TaaI ACNGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 351
TasI AATT 1 cut(s) 304
TatI WGTACW 1 cut(s) 251
TfiI GAWTC 2 cut(s) 101, 221
TscAI CASTG 2 cut(s) 90, 297
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 1 cut(s) 80
Tsp45I GTSAC 1 cut(s) 409
TspRI CASTG 2 cut(s) 90, 297
XapI RAATTY 1 cut(s) 304
XhoI CTCGAG 1 cut(s) 350
XspI CTAG 1 cut(s) 336
ZrmI AGTACT 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.