Rmu_sc0006675.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006675.1
OG0015538
Physical Location & Seq
Forward (+)
6659 .. 11013
4355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006675.1_g000001.1.cds

Sequence Viewer

Length: 687 bp
atgcaaggaactcgccgccttcctagagcagacgaggcactcaaggtgcataaattgagaccaagcccacctcgttctaccactattagcgacgcatcaccagcaatccctagtcccgctgccttccttccgcaaagccggcaacaaatcaactggagtccggaaaacgatgcccgatcctctgcactcaagccgatctacttcctcaccgaatctagacctcgacctgccgggaaagatttcgatgcccaagcaatcgatgaacccagttctctccacgaaaccccactcgacaaggaggcactccttctgaatctgacagaaatcgccaccgctgtccctctgctctctgcgaaggagtcgaagaggctgcactgggtctcaacccagattccttctctctcgttggctctctgtttcaagggatttttgtctggtgaaatgtgtaggtatcaagcctgggaagatgattcactacagagcgaagattttatacaaagtactccagatggcgtagatgttacagggacaaggtgggcagcgagactggcaaatttggaagagcggatgacaagagtggaggctagggtggaaagactcgaggcaaggatgttatatctgcaaaaaggaatgcgtgttgtttgcgtgctgtttctggtcacccttgtgtatgcaatatgcaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

228

Amino Acids

25.56

Weight (kDa)

7.67

Isoelectric Point (pI)

55.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13080
malus_domestica MD10G1033700.v1.1
prunus_persica Prupe.8G039700_v2.0.a1
pyrus_communis pycom05g02370
rosa_chinensis RchiOBHm_Chr6g0274341
rosa_laevigata RLG00000013551
rosa_multiflora Rmu_sc0006675.1_g000001 Rmu_sc0007877.1_g000027
rosa_roxburghii Rroxscaffold_7G00194340
rosa_rugosa Rorug06G0080900 Rorug06G0081000.1 Rorug06G0081100
rosa_samantha Rh6AG196200 Rh6BG200400 Rh6CG201300 Rh6DG192100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 235
AccBSI CCGCTC 1 cut(s) 565
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 5 cut(s) 16, 117, 131, 333, 565
AclWI GGATC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 553
AfaI GTAC 1 cut(s) 502
AgsI TTSAA 1 cut(s) 421
AjnI CCWGG 1 cut(s) 458
AleI CACNNNNGTG 1 cut(s) 665
Alw26I GTCTC 3 cut(s) 52, 385, 538
AlwI GGATC 1 cut(s) 171
Ama87I CYCGRG 1 cut(s) 599
Aor13HI TCCGGA 1 cut(s) 160
ApeKI GCWGC 3 cut(s) 119, 370, 539
ApoI RAATTY 1 cut(s) 553
Asp700I GAANNNNTTC 1 cut(s) 239
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 4 cut(s) 90, 199, 449, 652
AvaI CYCGRG 1 cut(s) 599
BarI GAAGNNNNNNTAC 2 cut(s) 477, 509
BbvI GCAGC 3 cut(s) 106, 357, 551
BccI CCATC 1 cut(s) 503
BcgI CGANNNNNNTGC 3 cut(s) 27, 352, 386
BciT130I CCWGG 1 cut(s) 460
BcnI CCSGG 1 cut(s) 232
BcoDI GTCTC 3 cut(s) 52, 385, 538
BfaI CTAG 4 cut(s) 24, 111, 216, 585
BfmI CTRYAG 1 cut(s) 476
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 4 cut(s) 16, 120, 371, 540
BlsI GCNGC 4 cut(s) 17, 121, 372, 541
BmcAI AGTACT 1 cut(s) 502
Bme1390I CCNGG 2 cut(s) 232, 460
BmeT110I CYCGRG 1 cut(s) 599
BmrFI CCNGG 2 cut(s) 232, 460
BmrI ACTGGG 2 cut(s) 261, 385
BmsI GCATC 3 cut(s) 104, 160, 235
BmuI ACTGGG 2 cut(s) 261, 385
BpmI CTGGAG 2 cut(s) 175, 489
BpuEI CTTGAG 2 cut(s) 26, 173
BpuMI CCSGG 1 cut(s) 232
Bsa29I ATCGAT 1 cut(s) 258
BsaI GGTCTC 2 cut(s) 52, 385
BsaJI CCNNGG 1 cut(s) 459
BsaWI WCCGGW 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 138
Bse1I ACTGG 4 cut(s) 158, 267, 380, 552
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 1 cut(s) 460
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 2 cut(s) 573, 615
BseNI ACTGG 4 cut(s) 158, 267, 380, 552
BseXI GCAGC 3 cut(s) 106, 357, 551
BsgI GTGCAG 2 cut(s) 168, 356
BshVI ATCGAT 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 599
BsiSI CCGG 3 cut(s) 139, 161, 231
BslFI GGGAC 3 cut(s) 99, 323, 541
BsmAI GTCTC 3 cut(s) 52, 385, 538
BsmFI GGGAC 3 cut(s) 99, 323, 541
BsmI GAATGC 1 cut(s) 636
Bso31I GGTCTC 2 cut(s) 52, 385
BsoBI CYCGRG 1 cut(s) 599
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 2 cut(s) 176, 195
BspACI CCGC 5 cut(s) 16, 117, 131, 333, 565
BspDI ATCGAT 1 cut(s) 258
BspEI TCCGGA 1 cut(s) 160
BspMI ACCTGC 1 cut(s) 235
BspPI GGATC 1 cut(s) 171
BspQI GCTCTTC 1 cut(s) 555
BspTNI GGTCTC 2 cut(s) 52, 385
BsrBI CCGCTC 1 cut(s) 565
BsrFI RCCGGY 1 cut(s) 138
BsrI ACTGG 4 cut(s) 158, 267, 380, 552
BssAI RCCGGY 1 cut(s) 138
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 2 cut(s) 176, 195
Bst2UI CCWGG 1 cut(s) 460
Bst6I CTCTTC 2 cut(s) 359, 555
BstC8I GCNNGC 2 cut(s) 140, 647
BstEII GGTNACC 1 cut(s) 658
BstF5I GGATG 2 cut(s) 573, 615
BstKTI GATC 2 cut(s) 179, 198
BstMAI GTCTC 3 cut(s) 52, 385, 538
BstMBI GATC 2 cut(s) 176, 195
BstMWI GCNNNNNNNGC 4 cut(s) 35, 101, 139, 548
BstNI CCWGG 1 cut(s) 460
BstPI GGTNACC 1 cut(s) 658
BstSCI CCNGG 2 cut(s) 230, 458
BstSFI CTRYAG 1 cut(s) 476
BstV1I GCAGC 3 cut(s) 106, 357, 551
Bsu15I ATCGAT 1 cut(s) 258
BsuTUI ATCGAT 1 cut(s) 258
BtsCI GGATG 2 cut(s) 573, 615
BtsIMutI CAGTG 1 cut(s) 373
BveI ACCTGC 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 140, 647
Cfr10I RCCGGY 1 cut(s) 138
ClaI ATCGAT 1 cut(s) 258
CseI GACGC 1 cut(s) 101
Csp6I GTAC 1 cut(s) 501
CviJI RGCY 7 cut(s) 66, 138, 193, 370, 410, 458, 584
CviKI_1 RGCY 7 cut(s) 66, 138, 193, 370, 410, 458, 584
CviQI GTAC 1 cut(s) 501
DpnI GATC 2 cut(s) 178, 197
DpnII GATC 2 cut(s) 176, 195
Eam1104I CTCTTC 2 cut(s) 359, 555
EarI CTCTTC 2 cut(s) 359, 555
Eco31I GGTCTC 2 cut(s) 52, 385
Eco88I CYCGRG 1 cut(s) 599
Eco91I GGTNACC 1 cut(s) 658
EcoO65I GGTNACC 1 cut(s) 658
EcoRII CCWGG 1 cut(s) 458
FaiI YATR 5 cut(s) 51, 494, 616, 672, 679
FaqI GGGAC 3 cut(s) 99, 323, 541
FauI CCCGC 1 cut(s) 124
Fnu4HI GCNGC 4 cut(s) 16, 120, 371, 540
FokI GGATG 2 cut(s) 580, 622
Fsp4HI GCNGC 4 cut(s) 16, 120, 371, 540
FspBI CTAG 4 cut(s) 24, 111, 216, 585
GluI GCNGC 4 cut(s) 16, 120, 371, 540
GsuI CTGGAG 2 cut(s) 175, 489
HapII CCGG 3 cut(s) 139, 161, 231
HgaI GACGC 1 cut(s) 101
HinfI GANTC 7 cut(s) 157, 212, 313, 359, 391, 470, 597
HpaII CCGG 3 cut(s) 139, 161, 231
HphI GGTGA 4 cut(s) 90, 199, 449, 652
Hpy188I TCNGA 2 cut(s) 312, 318
Hpy188III TCNNGA 3 cut(s) 161, 216, 506
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 6 cut(s) 29, 133, 137, 317, 349, 405
HpyCH4V TGCA 7 cut(s) 4, 49, 185, 373, 622, 674, 681
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 101, 139, 548
Kpn2I TCCGGA 1 cut(s) 160
KroI GCCGGC 1 cut(s) 138
KroNI GCCGGC 1 cut(s) 140
Kzo9I GATC 2 cut(s) 176, 195
LguI GCTCTTC 1 cut(s) 555
Lsp1109I GCAGC 3 cut(s) 106, 357, 551
LweI GCATC 3 cut(s) 104, 160, 235
MaeI CTAG 4 cut(s) 24, 111, 216, 585
MaeIII GTNAC 2 cut(s) 520, 658
MalI GATC 2 cut(s) 178, 197
MbiI CCGCTC 1 cut(s) 565
MboI GATC 2 cut(s) 176, 195
MboII GAAGA 4 cut(s) 376, 476, 497, 572
MluCI AATT 2 cut(s) 53, 553
MlyI GAGTC 3 cut(s) 166, 368, 591
MroI TCCGGA 1 cut(s) 160
MroNI GCCGGC 1 cut(s) 138
MroXI GAANNNNTTC 1 cut(s) 239
MslI CAYNNNNRTG 1 cut(s) 665
MspA1I CMGCKG 2 cut(s) 119, 335
MspI CCGG 3 cut(s) 139, 161, 231
MspR9I CCNGG 2 cut(s) 232, 460
Mva1269I GAATGC 1 cut(s) 636
MvaI CCWGG 1 cut(s) 460
MwoI GCNNNNNNNGC 4 cut(s) 35, 101, 139, 548
NaeI GCCGGC 1 cut(s) 140
NciI CCSGG 1 cut(s) 232
NdeII GATC 2 cut(s) 176, 195
NgoMIV GCCGGC 1 cut(s) 138
NmuCI GTSAC 1 cut(s) 658
OliI CACNNNNGTG 1 cut(s) 665
PaeR7I CTCGAG 1 cut(s) 599
PciSI GCTCTTC 1 cut(s) 555
PctI GAATGC 1 cut(s) 636
PdiI GCCGGC 1 cut(s) 140
PdmI GAANNNNTTC 1 cut(s) 239
PfeI GAWTC 4 cut(s) 212, 313, 391, 470
PkrI GCNGC 4 cut(s) 17, 121, 372, 541
PleI GAGTC 3 cut(s) 165, 367, 591
PpsI GAGTC 3 cut(s) 165, 367, 591
Psp6I CCWGG 1 cut(s) 458
PspEI GGTNACC 1 cut(s) 658
PspGI CCWGG 1 cut(s) 458
PspXI VCTCGAGB 1 cut(s) 599
RsaI GTAC 1 cut(s) 502
RsaNI GTAC 1 cut(s) 501
RseI CAYNNNNRTG 1 cut(s) 665
SapI GCTCTTC 1 cut(s) 555
SatI GCNGC 4 cut(s) 16, 120, 371, 540
Sau3AI GATC 2 cut(s) 176, 195
ScaI AGTACT 1 cut(s) 502
SchI GAGTC 3 cut(s) 166, 368, 591
ScrFI CCNGG 2 cut(s) 232, 460
SetI ASST 6 cut(s) 48, 73, 223, 229, 452, 536
SfaNI GCATC 3 cut(s) 104, 160, 235
SfcI CTRYAG 1 cut(s) 476
Sfr274I CTCGAG 1 cut(s) 599
SlaI CTCGAG 1 cut(s) 599
SmiMI CAYNNNNRTG 1 cut(s) 665
SmlI CTYRAG 3 cut(s) 41, 188, 599
SmoI CTYRAG 3 cut(s) 41, 188, 599
Sse9I AATT 2 cut(s) 53, 553
SsiI CCGC 5 cut(s) 16, 117, 131, 333, 565
SspMI CTAG 4 cut(s) 24, 111, 216, 585
StyD4I CCNGG 2 cut(s) 230, 458
TaqI TCGA 6 cut(s) 223, 243, 258, 291, 362, 600
TasI AATT 2 cut(s) 53, 553
TatI WGTACW 1 cut(s) 500
TauI GCSGC 1 cut(s) 18
TfiI GAWTC 4 cut(s) 212, 313, 391, 470
TscAI CASTG 1 cut(s) 380
TseFI GTSAC 1 cut(s) 658
TseI GCWGC 3 cut(s) 119, 370, 539
Tsp45I GTSAC 1 cut(s) 658
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 1 cut(s) 380
XapI RAATTY 1 cut(s) 553
XbaI TCTAGA 1 cut(s) 215
XhoI CTCGAG 1 cut(s) 599
XmnI GAANNNNTTC 1 cut(s) 239
XspI CTAG 4 cut(s) 24, 111, 216, 585
ZrmI AGTACT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.