Rmu_sc0007877.1_g000027

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007877.1
OG0015538
Physical Location & Seq
Reverse (-)
108388 .. 110085
1698 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007877.1_g000027.1.cds

Sequence Viewer

Length: 318 bp
ctgcactgggtctcaacccagattccttctctctcgttggctctctgtttcaagggatttttgtctggtgaaatgtgtaggtatcaagcctgggaagatgattcactacagagcgaagattttatacaaagtactccagatggcgtagatgttacagggacaaggtgggcagcgagactggcaaatttggaagagcggatgacaagagtggaggctagggtggaaagactcgaggcaaggatgttatatctgcaaaaaggaatgcgtgttgtttgcgtgctgtttctggtcactcttgtgtatgcaatatgcaagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.06

Weight (kDa)

5.81

Isoelectric Point (pI)

27.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13080
malus_domestica MD10G1033700.v1.1
prunus_persica Prupe.8G039700_v2.0.a1
pyrus_communis pycom05g02370
rosa_chinensis RchiOBHm_Chr6g0274341
rosa_laevigata RLG00000013551
rosa_multiflora Rmu_sc0006675.1_g000001 Rmu_sc0007877.1_g000027
rosa_roxburghii Rroxscaffold_7G00194340
rosa_rugosa Rorug06G0080900 Rorug06G0081000.1 Rorug06G0081100
rosa_samantha Rh6AG196200 Rh6BG200400 Rh6CG201300 Rh6DG192100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 196
AciI CCGC 1 cut(s) 196
AcsI RAATTY 1 cut(s) 184
AfaI GTAC 1 cut(s) 133
AgsI TTSAA 1 cut(s) 52
AjnI CCWGG 1 cut(s) 89
AleI CACNNNNGTG 1 cut(s) 296
Alw26I GTCTC 2 cut(s) 16, 169
Ama87I CYCGRG 1 cut(s) 230
ApeKI GCWGC 1 cut(s) 170
ApoI RAATTY 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 80
AvaI CYCGRG 1 cut(s) 230
BarI GAAGNNNNNNTAC 2 cut(s) 108, 140
BbvI GCAGC 1 cut(s) 182
BccI CCATC 1 cut(s) 134
BciT130I CCWGG 1 cut(s) 91
BcoDI GTCTC 2 cut(s) 16, 169
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 1 cut(s) 107
BisI GCNGC 1 cut(s) 171
BlsI GCNGC 1 cut(s) 172
BmcAI AGTACT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 91
BmeT110I CYCGRG 1 cut(s) 230
BmrFI CCNGG 1 cut(s) 91
BmrI ACTGGG 1 cut(s) 16
BmuI ACTGGG 1 cut(s) 16
BpmI CTGGAG 1 cut(s) 120
BsaI GGTCTC 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 90
Bse1I ACTGG 2 cut(s) 11, 183
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 90
BseGI GGATG 2 cut(s) 204, 246
BseNI ACTGG 2 cut(s) 11, 183
BseXI GCAGC 1 cut(s) 182
BsiHKCI CYCGRG 1 cut(s) 230
BslFI GGGAC 1 cut(s) 172
BsmAI GTCTC 2 cut(s) 16, 169
BsmFI GGGAC 1 cut(s) 172
BsmI GAATGC 1 cut(s) 267
Bso31I GGTCTC 1 cut(s) 16
BsoBI CYCGRG 1 cut(s) 230
BspACI CCGC 1 cut(s) 196
BspQI GCTCTTC 1 cut(s) 186
BspTNI GGTCTC 1 cut(s) 16
BsrBI CCGCTC 1 cut(s) 196
BsrI ACTGG 2 cut(s) 11, 183
BssECI CCNNGG 1 cut(s) 90
Bst2UI CCWGG 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 278
BstF5I GGATG 2 cut(s) 204, 246
BstMAI GTCTC 2 cut(s) 16, 169
BstMWI GCNNNNNNNGC 1 cut(s) 179
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 1 cut(s) 89
BstSFI CTRYAG 1 cut(s) 107
BstV1I GCAGC 1 cut(s) 182
BtsCI GGATG 2 cut(s) 204, 246
BtsIMutI CAGTG 1 cut(s) 4
Cac8I GCNNGC 1 cut(s) 278
Csp6I GTAC 1 cut(s) 132
CviJI RGCY 3 cut(s) 41, 89, 215
CviKI_1 RGCY 3 cut(s) 41, 89, 215
CviQI GTAC 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 16
Eco88I CYCGRG 1 cut(s) 230
EcoRII CCWGG 1 cut(s) 89
FaiI YATR 4 cut(s) 125, 247, 303, 310
FaqI GGGAC 1 cut(s) 172
Fnu4HI GCNGC 1 cut(s) 171
FokI GGATG 2 cut(s) 211, 253
Fsp4HI GCNGC 1 cut(s) 171
FspBI CTAG 1 cut(s) 216
GluI GCNGC 1 cut(s) 171
GsuI CTGGAG 1 cut(s) 120
HinfI GANTC 3 cut(s) 22, 101, 228
HphI GGTGA 1 cut(s) 80
Hpy188III TCNNGA 1 cut(s) 137
HpyAV CCTTC 1 cut(s) 36
HpyCH4V TGCA 4 cut(s) 4, 253, 305, 312
HpyF10VI GCNNNNNNNGC 1 cut(s) 179
LguI GCTCTTC 1 cut(s) 186
LpnPI CCDG 8 cut(s) 32, 51, 76, 103, 141, 150, 164, 272
Lsp1109I GCAGC 1 cut(s) 182
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 151, 289
MbiI CCGCTC 1 cut(s) 196
MboII GAAGA 3 cut(s) 107, 128, 203
MluCI AATT 1 cut(s) 184
MlyI GAGTC 1 cut(s) 222
MnlI CCTC 2 cut(s) 205, 226
MslI CAYNNNNRTG 1 cut(s) 296
MspR9I CCNGG 1 cut(s) 91
Mva1269I GAATGC 1 cut(s) 267
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 179
NmuCI GTSAC 1 cut(s) 289
OliI CACNNNNGTG 1 cut(s) 296
PaeR7I CTCGAG 1 cut(s) 230
PciSI GCTCTTC 1 cut(s) 186
PctI GAATGC 1 cut(s) 267
PfeI GAWTC 2 cut(s) 22, 101
PkrI GCNGC 1 cut(s) 172
PleI GAGTC 1 cut(s) 222
PpsI GAGTC 1 cut(s) 222
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspXI VCTCGAGB 1 cut(s) 230
RsaI GTAC 1 cut(s) 133
RsaNI GTAC 1 cut(s) 132
RseI CAYNNNNRTG 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 186
SatI GCNGC 1 cut(s) 171
ScaI AGTACT 1 cut(s) 133
SchI GAGTC 1 cut(s) 222
ScrFI CCNGG 1 cut(s) 91
SetI ASST 2 cut(s) 83, 167
SfcI CTRYAG 1 cut(s) 107
Sfr274I CTCGAG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 230
SmiMI CAYNNNNRTG 1 cut(s) 296
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 1 cut(s) 184
SsiI CCGC 1 cut(s) 196
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 1 cut(s) 89
TaqI TCGA 1 cut(s) 231
TasI AATT 1 cut(s) 184
TatI WGTACW 1 cut(s) 131
TfiI GAWTC 2 cut(s) 22, 101
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 289
XapI RAATTY 1 cut(s) 184
XhoI CTCGAG 1 cut(s) 230
XspI CTAG 1 cut(s) 216
ZrmI AGTACT 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.