Rroxscaffold_7G00194340

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
36113707 .. 36115918
2212 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194340.1

Sequence Viewer

Length: 246 bp
ATGTGTAGGTATCAAGCCTGGGAAGATGATTCACTACAGAACGAAGATTTTATACAAAGTACTCCAGATGGCGTAGATGTTGCAGGGACAAGGTGGGCAGCAAGACTGGCAAATTTGGAAGAGCGGATGACAAGAGTGGAGGCTAGGGTGGAAAGACTCGAGGCAAGGATGTTATATCTGCAAAAAGGAATGCGTGTTGTTTGCGTGCTGTTTCTGGTCACTCTTGTGTATGCAATATGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

9.44

Weight (kDa)

5.36

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 124
AciI CCGC 1 cut(s) 124
AcsI RAATTY 1 cut(s) 112
AfaI GTAC 1 cut(s) 61
AjnI CCWGG 1 cut(s) 17
AleI CACNNNNGTG 1 cut(s) 224
Ama87I CYCGRG 1 cut(s) 158
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 158
BarI GAAGNNNNNNTAC 2 cut(s) 36, 68
BbvI GCAGC 1 cut(s) 110
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 1 cut(s) 19
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 158
BmrFI CCNGG 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 48
BsaJI CCNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 111
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 18
BseGI GGATG 2 cut(s) 132, 174
BseNI ACTGG 1 cut(s) 111
BseXI GCAGC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 100
BsmI GAATGC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 158
BspACI CCGC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 124
BsrI ACTGG 1 cut(s) 111
BssECI CCNNGG 1 cut(s) 18
Bst2UI CCWGG 1 cut(s) 19
Bst6I CTCTTC 1 cut(s) 114
BstC8I GCNNGC 1 cut(s) 206
BstF5I GGATG 2 cut(s) 132, 174
BstMWI GCNNNNNNNGC 1 cut(s) 107
BstNI CCWGG 1 cut(s) 19
BstSCI CCNGG 1 cut(s) 17
BstSFI CTRYAG 1 cut(s) 35
BstV1I GCAGC 1 cut(s) 110
BtsCI GGATG 2 cut(s) 132, 174
Cac8I GCNNGC 1 cut(s) 206
Csp6I GTAC 1 cut(s) 60
CviJI RGCY 2 cut(s) 17, 143
CviKI_1 RGCY 2 cut(s) 17, 143
CviQI GTAC 1 cut(s) 60
Eam1104I CTCTTC 1 cut(s) 114
EarI CTCTTC 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 158
EcoRII CCWGG 1 cut(s) 17
FaiI YATR 4 cut(s) 53, 175, 231, 238
FaqI GGGAC 1 cut(s) 100
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 139, 181
Fsp4HI GCNGC 1 cut(s) 99
FspBI CTAG 1 cut(s) 144
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 48
HinfI GANTC 2 cut(s) 29, 156
Hpy188III TCNNGA 1 cut(s) 65
HpyCH4V TGCA 4 cut(s) 83, 181, 233, 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 107
LguI GCTCTTC 1 cut(s) 114
LpnPI CCDG 6 cut(s) 4, 31, 69, 78, 92, 200
Lsp1109I GCAGC 1 cut(s) 110
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 217
MbiI CCGCTC 1 cut(s) 124
MboII GAAGA 3 cut(s) 35, 56, 131
MluCI AATT 1 cut(s) 112
MlyI GAGTC 1 cut(s) 150
MnlI CCTC 2 cut(s) 133, 154
MslI CAYNNNNRTG 1 cut(s) 224
MspR9I CCNGG 1 cut(s) 19
Mva1269I GAATGC 1 cut(s) 195
MvaI CCWGG 1 cut(s) 19
MwoI GCNNNNNNNGC 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 217
OliI CACNNNNGTG 1 cut(s) 224
PaeR7I CTCGAG 1 cut(s) 158
PciSI GCTCTTC 1 cut(s) 114
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PspXI VCTCGAGB 1 cut(s) 158
RsaI GTAC 1 cut(s) 61
RsaNI GTAC 1 cut(s) 60
RseI CAYNNNNRTG 1 cut(s) 224
SapI GCTCTTC 1 cut(s) 114
SatI GCNGC 1 cut(s) 99
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 1 cut(s) 150
ScrFI CCNGG 1 cut(s) 19
SetI ASST 2 cut(s) 11, 95
SfcI CTRYAG 1 cut(s) 35
Sfr274I CTCGAG 1 cut(s) 158
SlaI CTCGAG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 224
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 112
SsiI CCGC 1 cut(s) 124
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 17
TaqI TCGA 1 cut(s) 159
TasI AATT 1 cut(s) 112
TatI WGTACW 1 cut(s) 59
TfiI GAWTC 1 cut(s) 29
TseFI GTSAC 1 cut(s) 217
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 1 cut(s) 217
XapI RAATTY 1 cut(s) 112
XhoI CTCGAG 1 cut(s) 158
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.