pycom05g02370

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
2810722 .. 2810967
246 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g02370.1

Sequence Viewer

Length: 246 bp
ATGTGTAACTATCAAGCTTGGGAAGACGATTCTCTGCAGGGTGAAGATTATGCACAGAGCACGGCAGATGGTGTGGATGTTGGGGAGACGAGGTGGGGAGCGCGGCTGGCAATGTTGGAAGCGCGGATAGCTCGAGTGGAGGCTAGGGTGGAAAGACTGGAGGCAAAGATGCTCTATCTGCAAAAGGGAATGCGTGTCGTTTGCGTGCTGTTTCTGTTTACACTCATCTATGCAGTTGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.26

Weight (kDa)

5.02

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 103, 124
AciI CCGC 2 cut(s) 103, 124
AluBI AGCT 2 cut(s) 17, 131
AluI AGCT 2 cut(s) 17, 131
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 132
AspLEI GCGC 2 cut(s) 103, 124
AsuHPI GGTGA 1 cut(s) 53
AvaI CYCGRG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 30
Bbv12I GWGCWC 1 cut(s) 62
BccI CCATC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 35
BisI GCNGC 1 cut(s) 104
BlsI GCNGC 1 cut(s) 105
BmeT110I CYCGRG 1 cut(s) 132
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 30
BpmI CTGGAG 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse1I ACTGG 1 cut(s) 162
Bse3DI GCAATG 1 cut(s) 117
BseGI GGATG 1 cut(s) 82
BseMI GCAATG 1 cut(s) 117
BseNI ACTGG 1 cut(s) 162
Bsh1236I CGCG 2 cut(s) 103, 124
BsiHKAI GWGCWC 1 cut(s) 62
BsiHKCI CYCGRG 1 cut(s) 132
BsmAI GTCTC 1 cut(s) 80
BsmBI CGTCTC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 62
BspACI CCGC 2 cut(s) 103, 124
BspFNI CGCG 2 cut(s) 103, 124
BspMAI CTGCAG 1 cut(s) 39
BsrDI GCAATG 1 cut(s) 117
BsrI ACTGG 1 cut(s) 162
BstC8I GCNNGC 2 cut(s) 108, 206
BstF5I GGATG 1 cut(s) 82
BstFNI CGCG 2 cut(s) 103, 124
BstHHI GCGC 2 cut(s) 103, 124
BstMAI GTCTC 1 cut(s) 80
BstMWI GCNNNNNNNGC 3 cut(s) 107, 128, 178
BstSFI CTRYAG 1 cut(s) 35
BstUI CGCG 2 cut(s) 103, 124
BstV2I GAAGAC 1 cut(s) 30
BtsCI GGATG 1 cut(s) 82
Cac8I GCNNGC 2 cut(s) 108, 206
CfoI GCGC 2 cut(s) 103, 124
CviJI RGCY 4 cut(s) 17, 106, 131, 143
CviKI_1 RGCY 4 cut(s) 17, 106, 131, 143
Eco88I CYCGRG 1 cut(s) 132
Esp3I CGTCTC 1 cut(s) 80
FaiI YATR 2 cut(s) 51, 231
Fnu4HI GCNGC 1 cut(s) 104
FokI GGATG 1 cut(s) 89
Fsp4HI GCNGC 1 cut(s) 104
FspBI CTAG 1 cut(s) 144
GlaI GCGC 2 cut(s) 102, 123
GluI GCNGC 1 cut(s) 104
GsuI CTGGAG 1 cut(s) 179
HhaI GCGC 2 cut(s) 103, 124
Hin6I GCGC 2 cut(s) 101, 122
HinP1I GCGC 2 cut(s) 101, 122
HindIII AAGCTT 1 cut(s) 15
HinfI GANTC 1 cut(s) 29
HphI GGTGA 1 cut(s) 53
Hpy166II GTNNAC 1 cut(s) 219
Hpy8I GTNNAC 1 cut(s) 219
HpyCH4V TGCA 4 cut(s) 37, 53, 181, 233
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 128, 178
HspAI GCGC 2 cut(s) 101, 122
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 3 cut(s) 23, 92, 143
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 1 cut(s) 5
MboII GAAGA 2 cut(s) 35, 56
MhlI GDGCHC 1 cut(s) 62
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 84, 133, 154
Mva1269I GAATGC 1 cut(s) 195
MvnI CGCG 2 cut(s) 103, 124
MwoI GCNNNNNNNGC 3 cut(s) 107, 128, 178
PaeR7I CTCGAG 1 cut(s) 132
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 29
PkrI GCNGC 1 cut(s) 105
PspXI VCTCGAGB 1 cut(s) 132
PstI CTGCAG 1 cut(s) 39
SatI GCNGC 1 cut(s) 104
SduI GDGCHC 1 cut(s) 62
SetI ASST 3 cut(s) 19, 95, 133
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 1 cut(s) 35
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
SsiI CCGC 2 cut(s) 103, 124
SspMI CTAG 1 cut(s) 144
TaqI TCGA 1 cut(s) 133
TauI GCSGC 1 cut(s) 106
TfiI GAWTC 1 cut(s) 29
XhoI CTCGAG 1 cut(s) 132
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.