Rh6DG192100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0015538
Physical Location & Seq
Reverse (-)
34444676 .. 34446924
2249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG192100.1

Sequence Viewer

Length: 327 bp
ATGTCCAGGGCTGCACTGGGTCTCAACCCAGATTCCTTCTCTCTCGTTGGCTTTCTGTTTAAAGGGATTTTGTCTGGTGAAATGTGTAGGTATCAAGCCTGGGAAGATGATTCACTACAGAGCGAAGATTTTATACAAAGTACTCCAGATGGTGTAGATGTTACAGGGACAAGGTGGGCGGCGAGACTGGCAAATTTGGAAGAGCGGATGACAAGAGTGGAGGCTAGGGTGGAAAGACTCGAGGCAAGGATGTTATATCTGCAAAAAGGAATGCGTGTTGTTTGCGTGCTGTTTCTGGTCACTCTTGTGTATGCAATATGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.26

Weight (kDa)

5.42

Isoelectric Point (pI)

34.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13080
malus_domestica MD10G1033700.v1.1
prunus_persica Prupe.8G039700_v2.0.a1
pyrus_communis pycom05g02370
rosa_chinensis RchiOBHm_Chr6g0274341
rosa_laevigata RLG00000013551
rosa_multiflora Rmu_sc0006675.1_g000001 Rmu_sc0007877.1_g000027
rosa_roxburghii Rroxscaffold_7G00194340
rosa_rugosa Rorug06G0080900 Rorug06G0081000.1 Rorug06G0081100
rosa_samantha Rh6AG196200 Rh6BG200400 Rh6CG201300 Rh6DG192100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 205
AciI CCGC 2 cut(s) 179, 205
AcsI RAATTY 1 cut(s) 193
AfaI GTAC 1 cut(s) 142
AjnI CCWGG 2 cut(s) 5, 98
AleI CACNNNNGTG 1 cut(s) 305
Alw26I GTCTC 2 cut(s) 26, 178
Ama87I CYCGRG 1 cut(s) 239
ApeKI GCWGC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 193
AsuHPI GGTGA 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 239
BarI GAAGNNNNNNTAC 2 cut(s) 117, 149
BccI CCATC 1 cut(s) 143
BciT130I CCWGG 2 cut(s) 7, 100
BcoDI GTCTC 2 cut(s) 26, 178
BfaI CTAG 1 cut(s) 225
BfmI CTRYAG 1 cut(s) 116
BisI GCNGC 2 cut(s) 12, 180
BlsI GCNGC 2 cut(s) 13, 181
BmcAI AGTACT 1 cut(s) 142
Bme1390I CCNGG 2 cut(s) 7, 100
BmeT110I CYCGRG 1 cut(s) 239
BmrFI CCNGG 2 cut(s) 7, 100
BmrI ACTGGG 1 cut(s) 26
BmuI ACTGGG 1 cut(s) 26
BpmI CTGGAG 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 26
BsaJI CCNNGG 2 cut(s) 6, 99
Bse1I ACTGG 2 cut(s) 21, 192
BseBI CCWGG 2 cut(s) 7, 100
BseDI CCNNGG 2 cut(s) 6, 99
BseGI GGATG 2 cut(s) 213, 255
BseNI ACTGG 2 cut(s) 21, 192
BsiHKCI CYCGRG 1 cut(s) 239
BslFI GGGAC 1 cut(s) 181
BsmAI GTCTC 2 cut(s) 26, 178
BsmFI GGGAC 1 cut(s) 181
BsmI GAATGC 1 cut(s) 276
Bso31I GGTCTC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 239
BspACI CCGC 2 cut(s) 179, 205
BspQI GCTCTTC 1 cut(s) 195
BspTNI GGTCTC 1 cut(s) 26
BsrBI CCGCTC 1 cut(s) 205
BsrI ACTGG 2 cut(s) 21, 192
BssECI CCNNGG 2 cut(s) 6, 99
Bst2UI CCWGG 2 cut(s) 7, 100
Bst6I CTCTTC 1 cut(s) 195
BstC8I GCNNGC 1 cut(s) 287
BstF5I GGATG 2 cut(s) 213, 255
BstMAI GTCTC 2 cut(s) 26, 178
BstMWI GCNNNNNNNGC 1 cut(s) 188
BstNI CCWGG 2 cut(s) 7, 100
BstSCI CCNGG 2 cut(s) 5, 98
BstSFI CTRYAG 1 cut(s) 116
BtsCI GGATG 2 cut(s) 213, 255
BtsIMutI CAGTG 1 cut(s) 14
Cac8I GCNNGC 1 cut(s) 287
Csp6I GTAC 1 cut(s) 141
CviJI RGCY 4 cut(s) 11, 51, 98, 224
CviKI_1 RGCY 4 cut(s) 11, 51, 98, 224
CviQI GTAC 1 cut(s) 141
DraI TTTAAA 1 cut(s) 61
Eam1104I CTCTTC 1 cut(s) 195
EarI CTCTTC 1 cut(s) 195
Eco31I GGTCTC 1 cut(s) 26
Eco88I CYCGRG 1 cut(s) 239
EcoRII CCWGG 2 cut(s) 5, 98
FaiI YATR 4 cut(s) 134, 256, 312, 319
FaqI GGGAC 1 cut(s) 181
Fnu4HI GCNGC 2 cut(s) 12, 180
FokI GGATG 2 cut(s) 220, 262
Fsp4HI GCNGC 2 cut(s) 12, 180
FspBI CTAG 1 cut(s) 225
GluI GCNGC 2 cut(s) 12, 180
GsuI CTGGAG 1 cut(s) 129
HinfI GANTC 3 cut(s) 32, 110, 237
HphI GGTGA 1 cut(s) 89
Hpy188III TCNNGA 1 cut(s) 146
HpyAV CCTTC 1 cut(s) 46
HpyCH4V TGCA 4 cut(s) 14, 262, 314, 321
HpyF10VI GCNNNNNNNGC 1 cut(s) 188
LguI GCTCTTC 1 cut(s) 195
MaeI CTAG 1 cut(s) 225
MaeIII GTNAC 2 cut(s) 160, 298
MbiI CCGCTC 1 cut(s) 205
MboII GAAGA 3 cut(s) 116, 137, 212
MluCI AATT 1 cut(s) 193
MlyI GAGTC 1 cut(s) 231
MnlI CCTC 2 cut(s) 214, 235
MseI TTAA 1 cut(s) 60
MslI CAYNNNNRTG 1 cut(s) 305
MspR9I CCNGG 2 cut(s) 7, 100
Mva1269I GAATGC 1 cut(s) 276
MvaI CCWGG 2 cut(s) 7, 100
MwoI GCNNNNNNNGC 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 298
OliI CACNNNNGTG 1 cut(s) 305
PaeR7I CTCGAG 1 cut(s) 239
PciSI GCTCTTC 1 cut(s) 195
PctI GAATGC 1 cut(s) 276
PfeI GAWTC 2 cut(s) 32, 110
PkrI GCNGC 2 cut(s) 13, 181
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
Psp6I CCWGG 2 cut(s) 5, 98
PspGI CCWGG 2 cut(s) 5, 98
PspXI VCTCGAGB 1 cut(s) 239
RsaI GTAC 1 cut(s) 142
RsaNI GTAC 1 cut(s) 141
RseI CAYNNNNRTG 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 195
SaqAI TTAA 1 cut(s) 60
SatI GCNGC 2 cut(s) 12, 180
ScaI AGTACT 1 cut(s) 142
SchI GAGTC 1 cut(s) 231
ScrFI CCNGG 2 cut(s) 7, 100
SetI ASST 2 cut(s) 92, 176
SfcI CTRYAG 1 cut(s) 116
Sfr274I CTCGAG 1 cut(s) 239
SlaI CTCGAG 1 cut(s) 239
SmiMI CAYNNNNRTG 1 cut(s) 305
SmlI CTYRAG 1 cut(s) 239
SmoI CTYRAG 1 cut(s) 239
Sse9I AATT 1 cut(s) 193
SsiI CCGC 2 cut(s) 179, 205
SspMI CTAG 1 cut(s) 225
StyD4I CCNGG 2 cut(s) 5, 98
TaqI TCGA 1 cut(s) 240
TasI AATT 1 cut(s) 193
TatI WGTACW 1 cut(s) 140
TauI GCSGC 1 cut(s) 182
TfiI GAWTC 2 cut(s) 32, 110
Tru1I TTAA 1 cut(s) 60
Tru9I TTAA 1 cut(s) 60
TscAI CASTG 1 cut(s) 21
TseFI GTSAC 1 cut(s) 298
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 298
TspRI CASTG 1 cut(s) 21
XapI RAATTY 1 cut(s) 193
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 239
XspI CTAG 1 cut(s) 225
ZrmI AGTACT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.