Rh6AG196200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0015538
Physical Location & Seq
Reverse (-)
35219193 .. 35221724
2532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG196200.1

Sequence Viewer

Length: 369 bp
ATGAACCCATACCAAAGCATCTTGCCCTGTTTAGATTATAATGTCCGGAGTTTACTGAAAATTATACTGGTGAAAACTCTTCCGCCATATAACACTATCCGACATGGATTTTTGTCTGGTGAAATGTGTAGGTATCAAGCCTGGGAAGATGATTCACTACAGAGCGAAGATTTTATACAAAGTACTCCAGATGGCGTAGATGTTACAGGGACAAGGTGGGCAGCGAGACTGGCAAATTTGGAAGAGCGGATGACAAGAGTGGAGGCTAGGGTGGAAAGACTCGAGGCAAGGATGTTATATCTGCAAAAAGGAATGCGTGCTGTTTGCGTGCTGTTTCTGGTCACTCTTGTGTATGCAATATGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.12

Weight (kDa)

7.64

Isoelectric Point (pI)

41.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13080
malus_domestica MD10G1033700.v1.1
prunus_persica Prupe.8G039700_v2.0.a1
pyrus_communis pycom05g02370
rosa_chinensis RchiOBHm_Chr6g0274341
rosa_laevigata RLG00000013551
rosa_multiflora Rmu_sc0006675.1_g000001 Rmu_sc0007877.1_g000027
rosa_roxburghii Rroxscaffold_7G00194340
rosa_rugosa Rorug06G0080900 Rorug06G0081000.1 Rorug06G0081100
rosa_samantha Rh6AG196200 Rh6BG200400 Rh6CG201300 Rh6DG192100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 39
AccBSI CCGCTC 1 cut(s) 247
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 2 cut(s) 83, 247
AcsI RAATTY 1 cut(s) 235
AfaI GTAC 1 cut(s) 184
AjnI CCWGG 1 cut(s) 140
AleI CACNNNNGTG 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 220
Ama87I CYCGRG 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 45
ApeKI GCWGC 1 cut(s) 221
ApoI RAATTY 1 cut(s) 235
AsuHPI GGTGA 2 cut(s) 82, 131
AvaI CYCGRG 1 cut(s) 281
BarI GAAGNNNNNNTAC 2 cut(s) 159, 191
BbvI GCAGC 1 cut(s) 233
BccI CCATC 1 cut(s) 185
BciT130I CCWGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 220
BfaI CTAG 1 cut(s) 267
BfmI CTRYAG 1 cut(s) 158
BisI GCNGC 1 cut(s) 222
BlsI GCNGC 1 cut(s) 223
BmcAI AGTACT 1 cut(s) 184
Bme1390I CCNGG 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 281
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 141
BsaWI WCCGGW 1 cut(s) 45
Bse1I ACTGG 2 cut(s) 72, 234
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 1 cut(s) 142
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 2 cut(s) 255, 297
BseNI ACTGG 2 cut(s) 72, 234
BseXI GCAGC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 281
BsiSI CCGG 1 cut(s) 46
BslFI GGGAC 1 cut(s) 223
BsmAI GTCTC 1 cut(s) 220
BsmFI GGGAC 1 cut(s) 223
BsmI GAATGC 1 cut(s) 318
BsoBI CYCGRG 1 cut(s) 281
Bsp13I TCCGGA 1 cut(s) 45
BspACI CCGC 2 cut(s) 83, 247
BspEI TCCGGA 1 cut(s) 45
BspQI GCTCTTC 1 cut(s) 237
BsrBI CCGCTC 1 cut(s) 247
BsrI ACTGG 2 cut(s) 72, 234
BssECI CCNNGG 1 cut(s) 141
Bst2UI CCWGG 1 cut(s) 142
Bst6I CTCTTC 2 cut(s) 84, 237
BstC8I GCNNGC 2 cut(s) 318, 329
BstF5I GGATG 2 cut(s) 255, 297
BstMAI GTCTC 1 cut(s) 220
BstMWI GCNNNNNNNGC 1 cut(s) 230
BstNI CCWGG 1 cut(s) 142
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 233
BtsCI GGATG 2 cut(s) 255, 297
Cac8I GCNNGC 2 cut(s) 318, 329
Csp6I GTAC 1 cut(s) 183
CviAII CATG 1 cut(s) 104
CviJI RGCY 2 cut(s) 140, 266
CviKI_1 RGCY 2 cut(s) 140, 266
CviQI GTAC 1 cut(s) 183
Eam1104I CTCTTC 2 cut(s) 84, 237
EarI CTCTTC 2 cut(s) 84, 237
EciI GGCGGA 1 cut(s) 72
Eco88I CYCGRG 1 cut(s) 281
EcoRII CCWGG 1 cut(s) 140
FaeI CATG 1 cut(s) 107
FaqI GGGAC 1 cut(s) 223
FatI CATG 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 222
FokI GGATG 2 cut(s) 262, 304
Fsp4HI GCNGC 1 cut(s) 222
FspBI CTAG 1 cut(s) 267
GluI GCNGC 1 cut(s) 222
GsuI CTGGAG 1 cut(s) 171
HapII CCGG 1 cut(s) 46
Hin1II CATG 1 cut(s) 107
HinfI GANTC 2 cut(s) 152, 279
HpaII CCGG 1 cut(s) 46
HphI GGTGA 2 cut(s) 82, 131
Hpy166II GTNNAC 1 cut(s) 53
Hpy188I TCNGA 1 cut(s) 101
Hpy188III TCNNGA 2 cut(s) 46, 188
Hpy8I GTNNAC 1 cut(s) 53
HpyCH4V TGCA 3 cut(s) 304, 356, 363
HpyF10VI GCNNNNNNNGC 1 cut(s) 230
Hsp92II CATG 1 cut(s) 107
Kpn2I TCCGGA 1 cut(s) 45
LguI GCTCTTC 1 cut(s) 237
Lsp1109I GCAGC 1 cut(s) 233
LweI GCATC 1 cut(s) 27
MaeI CTAG 1 cut(s) 267
MaeIII GTNAC 2 cut(s) 202, 340
MbiI CCGCTC 1 cut(s) 247
MboII GAAGA 4 cut(s) 71, 158, 179, 254
MluCI AATT 2 cut(s) 60, 235
MlyI GAGTC 1 cut(s) 273
MmeI TCCRAC 1 cut(s) 124
MnlI CCTC 2 cut(s) 256, 277
MroI TCCGGA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 142
Mva1269I GAATGC 1 cut(s) 318
MvaI CCWGG 1 cut(s) 142
MwoI GCNNNNNNNGC 1 cut(s) 230
NlaIII CATG 1 cut(s) 107
NmuCI GTSAC 1 cut(s) 340
OliI CACNNNNGTG 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 281
PciSI GCTCTTC 1 cut(s) 237
PctI GAATGC 1 cut(s) 318
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 1 cut(s) 223
PleI GAGTC 1 cut(s) 273
PpsI GAGTC 1 cut(s) 273
PsiI TTATAA 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 140
PspGI CCWGG 1 cut(s) 140
PspXI VCTCGAGB 1 cut(s) 281
RsaI GTAC 1 cut(s) 184
RsaNI GTAC 1 cut(s) 183
RseI CAYNNNNRTG 1 cut(s) 347
SapI GCTCTTC 1 cut(s) 237
SatI GCNGC 1 cut(s) 222
ScaI AGTACT 1 cut(s) 184
SchI GAGTC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 142
SetI ASST 2 cut(s) 134, 218
SfaNI GCATC 1 cut(s) 27
SfcI CTRYAG 1 cut(s) 158
Sfr274I CTCGAG 1 cut(s) 281
SlaI CTCGAG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 281
SmoI CTYRAG 1 cut(s) 281
Sse9I AATT 2 cut(s) 60, 235
SsiI CCGC 2 cut(s) 83, 247
SspMI CTAG 1 cut(s) 267
StyD4I CCNGG 1 cut(s) 140
TaqI TCGA 1 cut(s) 282
TasI AATT 2 cut(s) 60, 235
TatI WGTACW 1 cut(s) 182
TfiI GAWTC 1 cut(s) 152
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 235
XhoI CTCGAG 1 cut(s) 281
XspI CTAG 1 cut(s) 267
ZrmI AGTACT 1 cut(s) 184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.