Prupe.8G039700_v2.0.a1

No description available

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
Physical Location & Seq
Forward (+)
3967151 .. 3968717
1567 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G039700.1

Sequence Viewer

Length: 246 bp
ATGTGTAACTATCAACCTTGGGAAGAGGATTCACTTCGGAGTGAATATTATGTACAAAGTACTGCAGAAGGCGTAGATGTAGCGGAGACAAGGTGGGGAGCCCGGCTGGCAATGTTGGAAGCAAGGGTAACTCGAGTGGAGGCTAGGGTGGAAAGACTTGAGGCAAAGATGCTTCATCTGCAGAAGGGAATGCGTGTTGTTTGCGCGCTGTTTCTGGTTACTCTCATGTATGCAATATTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

82

Amino Acids

9.46

Weight (kDa)

6.57

Isoelectric Point (pI)

48.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0015538)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 206
AciI CCGC 1 cut(s) 83
AfaI GTAC 2 cut(s) 54, 61
AgsI TTSAA 1 cut(s) 241
Alw26I GTCTC 1 cut(s) 80
Ama87I CYCGRG 1 cut(s) 132
AspLEI GCGC 2 cut(s) 206, 208
AsuC2I CCSGG 1 cut(s) 103
AvaI CYCGRG 1 cut(s) 132
BanII GRGCYC 1 cut(s) 103
BcnI CCSGG 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 80
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 2 cut(s) 63, 179
BglI GCCNNNNNGGC 1 cut(s) 107
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 103
BmeT110I CYCGRG 1 cut(s) 132
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 103
BmsI GCATC 1 cut(s) 159
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 17
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
Bse3DI GCAATG 1 cut(s) 117
BseDI CCNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 117
BsePI GCGCGC 1 cut(s) 204
Bsh1236I CGCG 1 cut(s) 206
BsiHKCI CYCGRG 1 cut(s) 132
BsiSI CCGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 80
BsmI GAATGC 1 cut(s) 195
BsoBI CYCGRG 1 cut(s) 132
Bsp1286I GDGCHC 1 cut(s) 103
Bsp1407I TGTACA 1 cut(s) 52
BspACI CCGC 1 cut(s) 83
BspFNI CGCG 1 cut(s) 206
BspLI GGNNCC 1 cut(s) 100
BspMAI CTGCAG 2 cut(s) 67, 183
BsrDI GCAATG 1 cut(s) 117
BsrGI TGTACA 1 cut(s) 52
BssECI CCNNGG 1 cut(s) 17
BssHII GCGCGC 1 cut(s) 204
BssT1I CCWWGG 1 cut(s) 17
Bst6I CTCTTC 1 cut(s) 18
BstAUI TGTACA 1 cut(s) 52
BstC8I GCNNGC 2 cut(s) 108, 206
BstFNI CGCG 1 cut(s) 206
BstHHI GCGC 2 cut(s) 206, 208
BstMAI GTCTC 1 cut(s) 80
BstMWI GCNNNNNNNGC 2 cut(s) 107, 178
BstSCI CCNGG 1 cut(s) 101
BstSFI CTRYAG 2 cut(s) 63, 179
BstUI CGCG 1 cut(s) 206
Cac8I GCNNGC 2 cut(s) 108, 206
CfoI GCGC 2 cut(s) 206, 208
Csp6I GTAC 2 cut(s) 53, 60
CviAII CATG 1 cut(s) 226
CviJI RGCY 3 cut(s) 101, 106, 143
CviKI_1 RGCY 3 cut(s) 101, 106, 143
CviQI GTAC 2 cut(s) 53, 60
Eam1104I CTCTTC 1 cut(s) 18
EarI CTCTTC 1 cut(s) 18
Eco130I CCWWGG 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 132
EcoT14I CCWWGG 1 cut(s) 17
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 1 cut(s) 17
FaeI CATG 1 cut(s) 229
FaiI YATR 3 cut(s) 51, 227, 231
FatI CATG 1 cut(s) 225
FriOI GRGCYC 1 cut(s) 103
FspBI CTAG 1 cut(s) 144
GlaI GCGC 2 cut(s) 205, 207
HapII CCGG 1 cut(s) 103
HhaI GCGC 2 cut(s) 206, 208
Hin1II CATG 1 cut(s) 229
Hin6I GCGC 2 cut(s) 204, 206
HinP1I GCGC 2 cut(s) 204, 206
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 103
Hpy188I TCNGA 1 cut(s) 39
HpyAV CCTTC 2 cut(s) 62, 178
HpyCH4V TGCA 3 cut(s) 65, 181, 233
HpyF10VI GCNNNNNNNGC 2 cut(s) 107, 178
Hsp92II CATG 1 cut(s) 229
HspAI GCGC 2 cut(s) 204, 206
LmnI GCTCC 1 cut(s) 98
LpnPI CCDG 3 cut(s) 92, 116, 200
LweI GCATC 1 cut(s) 159
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 3 cut(s) 5, 127, 217
MboII GAAGA 1 cut(s) 35
MhlI GDGCHC 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 96
MnlI CCTC 3 cut(s) 19, 133, 154
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 103
Mva1269I GAATGC 1 cut(s) 195
MvnI CGCG 1 cut(s) 206
MwoI GCNNNNNNNGC 2 cut(s) 107, 178
NciI CCSGG 1 cut(s) 103
NlaIII CATG 1 cut(s) 229
NlaIV GGNNCC 1 cut(s) 100
PaeR7I CTCGAG 1 cut(s) 132
PauI GCGCGC 1 cut(s) 204
PctI GAATGC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 29
PspN4I GGNNCC 1 cut(s) 100
PspXI VCTCGAGB 1 cut(s) 132
PstI CTGCAG 2 cut(s) 67, 183
PteI GCGCGC 1 cut(s) 204
RsaI GTAC 2 cut(s) 54, 61
RsaNI GTAC 2 cut(s) 53, 60
ScaI AGTACT 1 cut(s) 61
ScrFI CCNGG 1 cut(s) 103
SduI GDGCHC 1 cut(s) 103
SetI ASST 2 cut(s) 19, 95
SfaNI GCATC 1 cut(s) 159
SfcI CTRYAG 2 cut(s) 63, 179
Sfr274I CTCGAG 1 cut(s) 132
SlaI CTCGAG 1 cut(s) 132
SmlI CTYRAG 2 cut(s) 132, 158
SmoI CTYRAG 2 cut(s) 132, 158
SsiI CCGC 1 cut(s) 83
SspI AATATT 2 cut(s) 47, 237
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 17
TaqI TCGA 1 cut(s) 133
TatI WGTACW 2 cut(s) 52, 59
TfiI GAWTC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 164
XhoI CTCGAG 1 cut(s) 132
XspI CTAG 1 cut(s) 144
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.