Rh6CG201300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015538
Physical Location & Seq
Reverse (-)
33553726 .. 33559772
6047 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG201300.1

Sequence Viewer

Length: 282 bp
ATGTTGGGAGCAGAAACCGGATTTTTGTCTGGTGAAATGTGTAGGTATCAAGCCTGGGAAGATGATTCACTACAGAGCGAAGATTTTATACAAAGTACTCCAGATGGTGTAGATGTTACAGGGACAAGGTGGGCAGCGAGACTGGCAAATTTGGAAGAGCGGATGACAAGAGTGGAGGCTAGGGTGGAAAGACTCGAGGCAAAGATGTTATATCTGCAAAAAGGAATGCGTGCTGTTTGCGTGCTGTTTCTGGTCACTCTTGTGTATGCAATATGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.58

Weight (kDa)

4.9

Isoelectric Point (pI)

34.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13080
malus_domestica MD10G1033700.v1.1
prunus_persica Prupe.8G039700_v2.0.a1
pyrus_communis pycom05g02370
rosa_chinensis RchiOBHm_Chr6g0274341
rosa_laevigata RLG00000013551
rosa_multiflora Rmu_sc0006675.1_g000001 Rmu_sc0007877.1_g000027
rosa_roxburghii Rroxscaffold_7G00194340
rosa_rugosa Rorug06G0080900 Rorug06G0081000.1 Rorug06G0081100
rosa_samantha Rh6AG196200 Rh6BG200400 Rh6CG201300 Rh6DG192100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 160
AciI CCGC 1 cut(s) 160
AcsI RAATTY 1 cut(s) 148
AfaI GTAC 1 cut(s) 97
AjnI CCWGG 1 cut(s) 53
AleI CACNNNNGTG 1 cut(s) 260
Alw26I GTCTC 1 cut(s) 133
Ama87I CYCGRG 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 44
AvaI CYCGRG 1 cut(s) 194
BarI GAAGNNNNNNTAC 2 cut(s) 72, 104
BbvI GCAGC 1 cut(s) 146
BccI CCATC 1 cut(s) 98
BciT130I CCWGG 1 cut(s) 55
BcoDI GTCTC 1 cut(s) 133
BfaI CTAG 1 cut(s) 180
BfmI CTRYAG 1 cut(s) 71
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
BmcAI AGTACT 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 55
BmeT110I CYCGRG 1 cut(s) 194
BmrFI CCNGG 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 54
BsaWI WCCGGW 1 cut(s) 17
Bse1I ACTGG 1 cut(s) 147
BseBI CCWGG 1 cut(s) 55
BseDI CCNNGG 1 cut(s) 54
BseGI GGATG 1 cut(s) 168
BseNI ACTGG 1 cut(s) 147
BseXI GCAGC 1 cut(s) 146
BsiHKCI CYCGRG 1 cut(s) 194
BsiSI CCGG 1 cut(s) 18
BslFI GGGAC 1 cut(s) 136
BsmAI GTCTC 1 cut(s) 133
BsmFI GGGAC 1 cut(s) 136
BsmI GAATGC 1 cut(s) 231
BsoBI CYCGRG 1 cut(s) 194
BspACI CCGC 1 cut(s) 160
BspQI GCTCTTC 1 cut(s) 150
BsrBI CCGCTC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 147
BssECI CCNNGG 1 cut(s) 54
Bst2UI CCWGG 1 cut(s) 55
Bst6I CTCTTC 1 cut(s) 150
BstC8I GCNNGC 2 cut(s) 231, 242
BstF5I GGATG 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 133
BstMWI GCNNNNNNNGC 1 cut(s) 143
BstNI CCWGG 1 cut(s) 55
BstSCI CCNGG 1 cut(s) 53
BstSFI CTRYAG 1 cut(s) 71
BstV1I GCAGC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 231, 242
Csp6I GTAC 1 cut(s) 96
CviJI RGCY 2 cut(s) 53, 179
CviKI_1 RGCY 2 cut(s) 53, 179
CviQI GTAC 1 cut(s) 96
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 194
EcoRII CCWGG 1 cut(s) 53
FaiI YATR 4 cut(s) 89, 211, 267, 274
FaqI GGGAC 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 180
GluI GCNGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 84
HapII CCGG 1 cut(s) 18
HinfI GANTC 2 cut(s) 65, 192
HpaII CCGG 1 cut(s) 18
HphI GGTGA 1 cut(s) 44
Hpy188III TCNNGA 1 cut(s) 101
HpyCH4V TGCA 3 cut(s) 217, 269, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 143
LguI GCTCTTC 1 cut(s) 150
LmnI GCTCC 1 cut(s) 8
LpnPI CCDG 8 cut(s) 15, 31, 40, 67, 105, 114, 128, 236
Lsp1109I GCAGC 1 cut(s) 146
MaeI CTAG 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 115, 253
MbiI CCGCTC 1 cut(s) 160
MboII GAAGA 3 cut(s) 71, 92, 167
MluCI AATT 1 cut(s) 148
MlyI GAGTC 1 cut(s) 186
MnlI CCTC 2 cut(s) 169, 190
MslI CAYNNNNRTG 1 cut(s) 260
MspI CCGG 1 cut(s) 18
MspR9I CCNGG 1 cut(s) 55
Mva1269I GAATGC 1 cut(s) 231
MvaI CCWGG 1 cut(s) 55
MwoI GCNNNNNNNGC 1 cut(s) 143
NmuCI GTSAC 1 cut(s) 253
OliI CACNNNNGTG 1 cut(s) 260
PaeR7I CTCGAG 1 cut(s) 194
PciSI GCTCTTC 1 cut(s) 150
PctI GAATGC 1 cut(s) 231
PfeI GAWTC 1 cut(s) 65
PkrI GCNGC 1 cut(s) 136
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
Psp6I CCWGG 1 cut(s) 53
PspGI CCWGG 1 cut(s) 53
PspXI VCTCGAGB 1 cut(s) 194
RsaI GTAC 1 cut(s) 97
RsaNI GTAC 1 cut(s) 96
RseI CAYNNNNRTG 1 cut(s) 260
SapI GCTCTTC 1 cut(s) 150
SatI GCNGC 1 cut(s) 135
ScaI AGTACT 1 cut(s) 97
SchI GAGTC 1 cut(s) 186
ScrFI CCNGG 1 cut(s) 55
SetI ASST 2 cut(s) 47, 131
SfcI CTRYAG 1 cut(s) 71
Sfr274I CTCGAG 1 cut(s) 194
SlaI CTCGAG 1 cut(s) 194
SmiMI CAYNNNNRTG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 1 cut(s) 148
SsiI CCGC 1 cut(s) 160
SspMI CTAG 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 53
TaqI TCGA 1 cut(s) 195
TasI AATT 1 cut(s) 148
TatI WGTACW 1 cut(s) 95
TfiI GAWTC 1 cut(s) 65
TseFI GTSAC 1 cut(s) 253
TseI GCWGC 1 cut(s) 134
Tsp45I GTSAC 1 cut(s) 253
XapI RAATTY 1 cut(s) 148
XhoI CTCGAG 1 cut(s) 194
XspI CTAG 1 cut(s) 180
ZrmI AGTACT 1 cut(s) 97
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.