RLG00000013551

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015538
Physical Location & Seq
Forward (+)
33039776 .. 33042414
2639 bp
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UTR
Exon/CDS
Intron
RLM00000013551

Sequence Viewer

Length: 333 bp
ATGCCGACAACAAGGCTGCACTGGGTCTCAACCCAGATTCCTTCTCTCTCGTTGGCTCTCTGTTTAAAGGGATTTTTGTCTGGTGAAATGTGTAGGTATCAAGCCTGGGAAGATGATTCACTACAGAGCGAAGATTTTATACAAAGTACTCCAGATGGCGTAGATGTTACAGGGACAAGGTGGGCAGCGAGACTGGCAAATTTGGAAGAGCGGATGACAAGAGTGGAGGCTAGGGTGGAAAGACTCGAGGCAAGGATGTTATATCTACAAAAAGGAATGCGTGTTGTTTGCGTGCTGTTTCTGGTCACTCTTGTGTATGCAATATGCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.61

Weight (kDa)

6.56

Isoelectric Point (pI)

33.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015538)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g13080
malus_domestica MD10G1033700.v1.1
prunus_persica Prupe.8G039700_v2.0.a1
pyrus_communis pycom05g02370
rosa_chinensis RchiOBHm_Chr6g0274341
rosa_laevigata RLG00000013551
rosa_multiflora Rmu_sc0006675.1_g000001 Rmu_sc0007877.1_g000027
rosa_roxburghii Rroxscaffold_7G00194340
rosa_rugosa Rorug06G0080900 Rorug06G0081000.1 Rorug06G0081100
rosa_samantha Rh6AG196200 Rh6BG200400 Rh6CG201300 Rh6DG192100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 211
AciI CCGC 1 cut(s) 211
AcsI RAATTY 1 cut(s) 199
AfaI GTAC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 104
AleI CACNNNNGTG 1 cut(s) 311
Alw26I GTCTC 2 cut(s) 31, 184
Ama87I CYCGRG 1 cut(s) 245
ApeKI GCWGC 2 cut(s) 16, 185
ApoI RAATTY 1 cut(s) 199
AsuHPI GGTGA 1 cut(s) 95
AvaI CYCGRG 1 cut(s) 245
BarI GAAGNNNNNNTAC 2 cut(s) 123, 155
BbvI GCAGC 2 cut(s) 3, 197
BccI CCATC 1 cut(s) 149
BciT130I CCWGG 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 31, 184
BfaI CTAG 1 cut(s) 231
BfmI CTRYAG 1 cut(s) 122
BisI GCNGC 2 cut(s) 17, 186
BlsI GCNGC 2 cut(s) 18, 187
BmcAI AGTACT 1 cut(s) 148
Bme1390I CCNGG 1 cut(s) 106
BmeT110I CYCGRG 1 cut(s) 245
BmrFI CCNGG 1 cut(s) 106
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BpmI CTGGAG 1 cut(s) 135
BsaI GGTCTC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 105
Bse1I ACTGG 2 cut(s) 26, 198
BseBI CCWGG 1 cut(s) 106
BseDI CCNNGG 1 cut(s) 105
BseGI GGATG 2 cut(s) 219, 261
BseNI ACTGG 2 cut(s) 26, 198
BseXI GCAGC 2 cut(s) 3, 197
BsiHKCI CYCGRG 1 cut(s) 245
BslFI GGGAC 1 cut(s) 187
BsmAI GTCTC 2 cut(s) 31, 184
BsmFI GGGAC 1 cut(s) 187
BsmI GAATGC 1 cut(s) 282
Bso31I GGTCTC 1 cut(s) 31
BsoBI CYCGRG 1 cut(s) 245
BspACI CCGC 1 cut(s) 211
BspQI GCTCTTC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 31
BsrBI CCGCTC 1 cut(s) 211
BsrI ACTGG 2 cut(s) 26, 198
BssECI CCNNGG 1 cut(s) 105
Bst2UI CCWGG 1 cut(s) 106
Bst6I CTCTTC 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 293
BstF5I GGATG 2 cut(s) 219, 261
BstMAI GTCTC 2 cut(s) 31, 184
BstMWI GCNNNNNNNGC 1 cut(s) 194
BstNI CCWGG 1 cut(s) 106
BstSCI CCNGG 1 cut(s) 104
BstSFI CTRYAG 1 cut(s) 122
BstV1I GCAGC 2 cut(s) 3, 197
BtsCI GGATG 2 cut(s) 219, 261
BtsIMutI CAGTG 1 cut(s) 19
Cac8I GCNNGC 1 cut(s) 293
Csp6I GTAC 1 cut(s) 147
CviJI RGCY 4 cut(s) 16, 56, 104, 230
CviKI_1 RGCY 4 cut(s) 16, 56, 104, 230
CviQI GTAC 1 cut(s) 147
DraI TTTAAA 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 201
EarI CTCTTC 1 cut(s) 201
Eco31I GGTCTC 1 cut(s) 31
Eco88I CYCGRG 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 104
FaiI YATR 4 cut(s) 140, 262, 318, 325
FaqI GGGAC 1 cut(s) 187
Fnu4HI GCNGC 2 cut(s) 17, 186
FokI GGATG 2 cut(s) 226, 268
Fsp4HI GCNGC 2 cut(s) 17, 186
FspBI CTAG 1 cut(s) 231
GluI GCNGC 2 cut(s) 17, 186
GsuI CTGGAG 1 cut(s) 135
HinfI GANTC 3 cut(s) 37, 116, 243
HphI GGTGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 51
HpyCH4V TGCA 3 cut(s) 19, 320, 327
HpyF10VI GCNNNNNNNGC 1 cut(s) 194
LguI GCTCTTC 1 cut(s) 201
LpnPI CCDG 9 cut(s) 7, 47, 66, 91, 118, 156, 165, 179, 287
Lsp1109I GCAGC 2 cut(s) 3, 197
MaeI CTAG 1 cut(s) 231
MaeIII GTNAC 2 cut(s) 166, 304
MbiI CCGCTC 1 cut(s) 211
MboII GAAGA 3 cut(s) 122, 143, 218
MluCI AATT 1 cut(s) 199
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 2 cut(s) 220, 241
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 311
MspR9I CCNGG 1 cut(s) 106
Mva1269I GAATGC 1 cut(s) 282
MvaI CCWGG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 194
NmuCI GTSAC 1 cut(s) 304
OliI CACNNNNGTG 1 cut(s) 311
PaeR7I CTCGAG 1 cut(s) 245
PciSI GCTCTTC 1 cut(s) 201
PctI GAATGC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 37, 116
PkrI GCNGC 2 cut(s) 18, 187
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 1 cut(s) 104
PspGI CCWGG 1 cut(s) 104
PspXI VCTCGAGB 1 cut(s) 245
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
RseI CAYNNNNRTG 1 cut(s) 311
SapI GCTCTTC 1 cut(s) 201
SaqAI TTAA 1 cut(s) 65
SatI GCNGC 2 cut(s) 17, 186
ScaI AGTACT 1 cut(s) 148
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 1 cut(s) 106
SetI ASST 2 cut(s) 98, 182
SfcI CTRYAG 1 cut(s) 122
Sfr274I CTCGAG 1 cut(s) 245
SlaI CTCGAG 1 cut(s) 245
SmiMI CAYNNNNRTG 1 cut(s) 311
SmlI CTYRAG 1 cut(s) 245
SmoI CTYRAG 1 cut(s) 245
Sse9I AATT 1 cut(s) 199
SsiI CCGC 1 cut(s) 211
SspMI CTAG 1 cut(s) 231
StyD4I CCNGG 1 cut(s) 104
TaqI TCGA 1 cut(s) 246
TasI AATT 1 cut(s) 199
TatI WGTACW 1 cut(s) 146
TfiI GAWTC 2 cut(s) 37, 116
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 26
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 16, 185
Tsp45I GTSAC 1 cut(s) 304
TspRI CASTG 1 cut(s) 26
XapI RAATTY 1 cut(s) 199
XhoI CTCGAG 1 cut(s) 245
XspI CTAG 1 cut(s) 231
ZrmI AGTACT 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.