Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0008118

Physical Location & Seq

Genomic Coordinates Forward (+)

13236903 .. 13238809

Gene Structure 1907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g15070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGGATAGAGAACAAGATGAGTTGCAGTTCCTTGGTATTATTGGCATCTACAAAGAATCCTTCAAGATTATATACAACTGGAGAAAAATCTTCAGCCAAATCACCTTGACCTTGATCCTCCCTTTGAGCTTCATCTTCTTGGCTCACATAGAAATCTCCAACATCCTCCTCTCCAGGATCCTCCACAGCGAACTCGTCTTAGACGAAACCAGAGGGGCAGACAGCGCCTCCCGCCAGAAGAAATTATCCGACGTCATCAACAAAGAATGGGCAACCTACTGGCTCTTCAAGGCTGCTTACCTCACTTCCATGCTCATCTTCGGCCTCCTCTCCACCTCCGCCGTCGTGTACACCATCGCAAGCGTATACACTTCCCGGGAAATCACTTTCCAGAAGATCATGAGAGTCGTCCCGAGGGTCTGGAAGCGCGTGATGATCACCTTCTTGTGCACCTTCCTGGCTTTCTTCCTCTACAACCTATTGGCAATAGTGGTTCTAGTTCTTTTTGTAATTTTCAACGGAAACGGCCAATCCAACGCCGGAGACATTATCGGTTTCTTTTTACTGATCTTGTACGTTATCGGGTTCGTGTACATGACCATAATCTGGCAACTGGCTAGCGTCGTCTCGGTGTTGGAAGAAACGAGAGGGATCAAAGCCATGATCAAAAGCATGAAGCTACTCAGAGGGAACATGTGGGTGGCCACGATCATCTTCTTCAAGCTCAATGTTTTAGCTGCTGTTCTTCAGTTTGCGTTTCAGGCGTTGGTTGTGCGTGGAGGGATGTTTGGGACGATGGGCAGGGTTGGCTTTGGTGTTCTATGTTTGTTGTTGCTGTTTAAATTGATTCTGTTTGCCCTCGTCATCCAAACGGTGCTATACTTCGTCTGCAAATCGTATCACCATGAAATCATCGACAAGTCGGCTCTGTCGGATCACCTCGAGGTTATTTATCTGGGAGACTATGTGCCTCTCAAGTCTAAGGATGTTCAGCTTGAGCAGGTAAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

337

Amino Acids

38.43

Weight (kDa)

9.35

Isoelectric Point (pI)

24.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008118)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g15070
malus_domestica	MD05G1011000.v1.1 MD10G1010500.v1.1 MD10G1010700.v1.1
prunus_persica	Prupe.8G014200_v2.0.a1
pyrus_communis	pycom05g00620 pycom10g00680
rosa_chinensis	RchiOBHm_Chr6g0277711 RchiOBHm_Chr6g0277721
rosa_laevigata	RLG00000013280 RLG00000013281
rosa_multiflora	Rmu_sc0007109.1_g000007 Rmu_sc0007109.1_g000008 Rmu_sc0007109.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191010 Rroxscaffold_7G00191030
rosa_rugosa	Rorug06G0110500 Rorug06G0110500
rosa_samantha	Rh6BG225000 Rh6CG227400 Rh6DG218100 Rh6DG218200
rosa_wichuraiana	Rw6G019360 Rw6G019370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	255
AbsI	CCTCGAGG	1 cut(s)	941
Acc36I	ACCTGC	1 cut(s)	991
AccB7I	CCANNNNNTGG	1 cut(s)	606
AccI	GTMKAC	1 cut(s)	366
AccII	CGCG	1 cut(s)	429
AciI	CCGC	2 cut(s)	232, 339
AclWI	GGATC	5 cut(s)	109, 172, 185, 659, 942
AcoI	YGGCCR	2 cut(s)	526, 702
AcuI	CTGAAG	2 cut(s)	76, 731
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	350, 575, 593
AfiI	CCNNNNNNNGG	1 cut(s)	606
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	4 cut(s)	64, 289, 517, 721
AjnI	CCWGG	2 cut(s)	173, 456
AluBI	AGCT	5 cut(s)	129, 679, 724, 737, 994
AluI	AGCT	5 cut(s)	129, 679, 724, 737, 994
Alw21I	GWGCWC	1 cut(s)	452
Alw26I	GTCTC	3 cut(s)	537, 631, 954
Alw44I	GTGCAC	1 cut(s)	448
AlwI	GGATC	5 cut(s)	109, 172, 185, 659, 942
Ama87I	CYCGRG	3 cut(s)	375, 412, 941
AoxI	GGCC	3 cut(s)	322, 526, 702
ApaLI	GTGCAC	1 cut(s)	448
ApeKI	GCWGC	2 cut(s)	293, 737
AspLEI	GCGC	2 cut(s)	227, 429
AsuC2I	CCSGG	2 cut(s)	376, 377
AsuHPI	GGTGA	4 cut(s)	94, 430, 893, 929
AsuNHI	GCTAGC	1 cut(s)	617
AvaI	CYCGRG	3 cut(s)	375, 412, 941
BaeGI	GKGCMC	1 cut(s)	452
BalI	TGGCCA	1 cut(s)	704
BamHI	GGATCC	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	452
BbvI	GCAGC	2 cut(s)	280, 724
BccI	CCATC	2 cut(s)	362, 790
BceAI	ACGGC	2 cut(s)	326, 541
BciT130I	CCWGG	2 cut(s)	175, 458
BclI	TGATCA	2 cut(s)	435, 663
BcnI	CCSGG	2 cut(s)	376, 377
BcoDI	GTCTC	3 cut(s)	537, 631, 954
BfaI	CTAG	2 cut(s)	497, 618
BfoI	RGCGCY	1 cut(s)	228
BfuAI	ACCTGC	1 cut(s)	991
BisI	GCNGC	2 cut(s)	294, 738
BlsI	GCNGC	2 cut(s)	295, 739
Bme1390I	CCNGG	4 cut(s)	175, 376, 377, 458
BmeT110I	CYCGRG	3 cut(s)	375, 412, 941
BmiI	GGNNCC	1 cut(s)	179
BmrFI	CCNGG	4 cut(s)	175, 376, 377, 458
BmsI	GCATC	1 cut(s)	54
BmtI	GCTAGC	1 cut(s)	621
BpmI	CTGGAG	2 cut(s)	100, 157
BpuEI	CTTGAG	1 cut(s)	959
BpuMI	CCSGG	2 cut(s)	376, 377
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	31, 375, 413
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 951, 981
Bsc4I	CCNNNNNNNGG	1 cut(s)	606
Bse1I	ACTGG	3 cut(s)	83, 284, 618
BseBI	CCWGG	2 cut(s)	175, 458
BseDI	CCNNGG	3 cut(s)	31, 375, 413
BseGI	GGATG	4 cut(s)	162, 789, 864, 991
BseLI	CCNNNNNNNGG	1 cut(s)	606
BseMII	CTCAG	1 cut(s)	697
BseNI	ACTGG	3 cut(s)	83, 284, 618
BseRI	GAGGAG	2 cut(s)	158, 317
BseSI	GKGCMC	1 cut(s)	452
BseXI	GCAGC	2 cut(s)	280, 724
Bsh1236I	CGCG	1 cut(s)	429
BshFI	GGCC	3 cut(s)	324, 528, 704
BsiHKAI	GWGCWC	1 cut(s)	452
BsiHKCI	CYCGRG	3 cut(s)	375, 412, 941
BsiSI	CCGG	2 cut(s)	376, 540
BslFI	GGGAC	2 cut(s)	395, 805
BslI	CCNNNNNNNGG	1 cut(s)	606
BsmAI	GTCTC	3 cut(s)	537, 631, 954
BsmBI	CGTCTC	1 cut(s)	631
BsmFI	GGGAC	2 cut(s)	395, 805
BsnI	GGCC	3 cut(s)	324, 528, 704
BsoBI	CYCGRG	3 cut(s)	375, 412, 941
Bsp1286I	GDGCHC	1 cut(s)	452
Bsp1407I	TGTACA	2 cut(s)	348, 591
Bsp143I	GATC	9 cut(s)	114, 177, 396, 435, 567, 651, 663, 708, 934
BspACI	CCGC	2 cut(s)	232, 339
BspANI	GGCC	3 cut(s)	324, 528, 704
BspCNI	CTCAG	1 cut(s)	696
BspFNI	CGCG	1 cut(s)	429
BspHI	TCATGA	1 cut(s)	399
BspLI	GGNNCC	1 cut(s)	179
BspMI	ACCTGC	1 cut(s)	991
BspOI	GCTAGC	1 cut(s)	621
BspPI	GGATC	5 cut(s)	109, 172, 185, 659, 942
BspQI	GCTCTTC	1 cut(s)	290
BsrGI	TGTACA	2 cut(s)	348, 591
BsrI	ACTGG	3 cut(s)	83, 284, 618
BssECI	CCNNGG	3 cut(s)	31, 375, 413
BssMI	GATC	9 cut(s)	114, 177, 396, 435, 567, 651, 663, 708, 934
BssNAI	GTATAC	1 cut(s)	367
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	1 cut(s)	31
Bst1107I	GTATAC	1 cut(s)	367
Bst2UI	CCWGG	2 cut(s)	175, 458
Bst4CI	ACNGT	1 cut(s)	874
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	252
BstAUI	TGTACA	2 cut(s)	348, 591
BstC8I	GCNNGC	2 cut(s)	361, 619
BstDEI	CTNAG	3 cut(s)	199, 683, 981
BstF5I	GGATG	4 cut(s)	162, 789, 864, 991
BstFNI	CGCG	1 cut(s)	429
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	227, 429
BstKTI	GATC	9 cut(s)	117, 180, 399, 438, 570, 654, 666, 711, 937
BstMAI	GTCTC	3 cut(s)	537, 631, 954
BstMBI	GATC	9 cut(s)	114, 177, 396, 435, 567, 651, 663, 708, 934
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 231, 761, 807
BstNI	CCWGG	2 cut(s)	175, 458
BstNSI	RCATGY	1 cut(s)	697
BstSCI	CCNGG	4 cut(s)	173, 374, 375, 456
BstSLI	GKGCMC	1 cut(s)	452
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	280, 724
BstX2I	RGATCY	1 cut(s)	177
BstYI	RGATCY	1 cut(s)	177
BstZ17I	GTATAC	1 cut(s)	367
BsuRI	GGCC	3 cut(s)	324, 528, 704
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	4 cut(s)	162, 789, 864, 991
BveI	ACCTGC	1 cut(s)	991
Cac8I	GCNNGC	2 cut(s)	361, 619
CciI	TCATGA	1 cut(s)	399
CfoI	GCGC	2 cut(s)	227, 429
Cfr9I	CCCGGG	1 cut(s)	375
CseI	GACGC	1 cut(s)	610
Csp6I	GTAC	3 cut(s)	349, 574, 592
CviAII	CATG	7 cut(s)	310, 400, 595, 661, 673, 694, 905
CviQI	GTAC	3 cut(s)	349, 574, 592
DdeI	CTNAG	3 cut(s)	199, 683, 981
DpnI	GATC	9 cut(s)	116, 179, 398, 437, 569, 653, 665, 710, 936
DpnII	GATC	9 cut(s)	114, 177, 396, 435, 567, 651, 663, 708, 934
DraI	TTTAAA	1 cut(s)	841
EaeI	YGGCCR	2 cut(s)	526, 702
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
EciI	GGCGGA	1 cut(s)	328
Eco130I	CCWWGG	1 cut(s)	31
Eco57I	CTGAAG	2 cut(s)	76, 731
Eco88I	CYCGRG	3 cut(s)	375, 412, 941
EcoRII	CCWGG	2 cut(s)	173, 456
EcoT14I	CCWWGG	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	31
Esp3I	CGTCTC	1 cut(s)	631
FaeI	CATG	7 cut(s)	313, 403, 598, 664, 676, 697, 908
FaqI	GGGAC	2 cut(s)	395, 805
FatI	CATG	7 cut(s)	309, 399, 594, 660, 672, 693, 904
FauI	CCCGC	1 cut(s)	239
FbaI	TGATCA	2 cut(s)	435, 663
FblI	GTMKAC	1 cut(s)	366
Fnu4HI	GCNGC	2 cut(s)	294, 738
FokI	GGATG	4 cut(s)	149, 796, 851, 998
Fsp4HI	GCNGC	2 cut(s)	294, 738
FspBI	CTAG	2 cut(s)	497, 618
GlaI	GCGC	2 cut(s)	226, 428
GluI	GCNGC	2 cut(s)	294, 738
GsuI	CTGGAG	2 cut(s)	100, 157
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	324, 528, 704
HapII	CCGG	2 cut(s)	376, 540
HgaI	GACGC	1 cut(s)	610
HhaI	GCGC	2 cut(s)	227, 429
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	7 cut(s)	313, 403, 598, 664, 676, 697, 908
Hin6I	GCGC	2 cut(s)	225, 427
HinP1I	GCGC	2 cut(s)	225, 427
HinfI	GANTC	3 cut(s)	56, 405, 847
HpaII	CCGG	2 cut(s)	376, 540
HphI	GGTGA	4 cut(s)	94, 430, 893, 929
Hpy166II	GTNNAC	5 cut(s)	349, 351, 367, 450, 592
Hpy188I	TCNGA	3 cut(s)	250, 686, 934
Hpy188III	TCNNGA	5 cut(s)	64, 391, 400, 412, 421
Hpy8I	GTNNAC	5 cut(s)	349, 351, 367, 450, 592
Hpy99I	CGWCG	3 cut(s)	254, 347, 626
HpyAV	CCTTC	3 cut(s)	70, 451, 463
HpyCH4III	ACNGT	1 cut(s)	874
HpyCH4IV	ACGT	2 cut(s)	252, 576
HpyCH4V	TGCA	3 cut(s)	25, 450, 891
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 231, 761, 807
HpyF3I	CTNAG	3 cut(s)	199, 683, 981
HpySE526I	ACGT	2 cut(s)	252, 576
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	7 cut(s)	313, 403, 598, 664, 676, 697, 908
HspAI	GCGC	2 cut(s)	225, 427
Ksp22I	TGATCA	2 cut(s)	435, 663
Kzo9I	GATC	9 cut(s)	114, 177, 396, 435, 567, 651, 663, 708, 934
LguI	GCTCTTC	1 cut(s)	290
Lsp1109I	GCAGC	2 cut(s)	280, 724
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	497, 618
MaeII	ACGT	2 cut(s)	252, 576
MalI	GATC	9 cut(s)	116, 179, 398, 437, 569, 653, 665, 710, 936
MboI	GATC	9 cut(s)	114, 177, 396, 435, 567, 651, 663, 708, 934
MflI	RGATCY	1 cut(s)	177
MhlI	GDGCHC	1 cut(s)	452
MlsI	TGGCCA	1 cut(s)	704
MluCI	AATT	3 cut(s)	242, 510, 842
MluNI	TGGCCA	1 cut(s)	704
MlyI	GAGTC	1 cut(s)	414
MmeI	TCCRAC	5 cut(s)	183, 273, 558, 615, 912
Mox20I	TGGCCA	1 cut(s)	704
MscI	TGGCCA	1 cut(s)	704
MseI	TTAA	1 cut(s)	840
MslI	CAYNNNNRTG	2 cut(s)	308, 698
Msp20I	TGGCCA	1 cut(s)	704
MspI	CCGG	2 cut(s)	376, 540
MspR9I	CCNGG	4 cut(s)	175, 376, 377, 458
MvaI	CCWGG	2 cut(s)	175, 458
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	224, 231, 761, 807
NciI	CCSGG	2 cut(s)	376, 377
NdeII	GATC	9 cut(s)	114, 177, 396, 435, 567, 651, 663, 708, 934
NheI	GCTAGC	1 cut(s)	617
NlaIII	CATG	7 cut(s)	313, 403, 598, 664, 676, 697, 908
NlaIV	GGNNCC	1 cut(s)	179
NspI	RCATGY	1 cut(s)	697
PaeR7I	CTCGAG	1 cut(s)	941
PagI	TCATGA	1 cut(s)	399
PciI	ACATGT	1 cut(s)	693
PciSI	GCTCTTC	1 cut(s)	290
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	56, 847
PflMI	CCANNNNNTGG	1 cut(s)	606
PfoI	TCCNGGA	1 cut(s)	173
PkrI	GCNGC	2 cut(s)	295, 739
PleI	GAGTC	1 cut(s)	413
PpsI	GAGTC	1 cut(s)	413
PscI	ACATGT	1 cut(s)	693
Psp6I	CCWGG	2 cut(s)	173, 456
PspGI	CCWGG	2 cut(s)	173, 456
PspN4I	GGNNCC	1 cut(s)	179
PspXI	VCTCGAGB	1 cut(s)	941
PsuI	RGATCY	1 cut(s)	177
RsaI	GTAC	3 cut(s)	350, 575, 593
RsaNI	GTAC	3 cut(s)	349, 574, 592
RseI	CAYNNNNRTG	2 cut(s)	308, 698
SapI	GCTCTTC	1 cut(s)	290
SaqAI	TTAA	1 cut(s)	840
SatI	GCNGC	2 cut(s)	294, 738
Sau3AI	GATC	9 cut(s)	114, 177, 396, 435, 567, 651, 663, 708, 934
SchI	GAGTC	1 cut(s)	414
ScrFI	CCNGG	4 cut(s)	175, 376, 377, 458
SduI	GDGCHC	1 cut(s)	452
SfaNI	GCATC	1 cut(s)	54
Sfr274I	CTCGAG	1 cut(s)	941
SlaI	CTCGAG	1 cut(s)	941
SmaI	CCCGGG	1 cut(s)	377
SmiMI	CAYNNNNRTG	2 cut(s)	308, 698
SmlI	CTYRAG	3 cut(s)	941, 974, 995
SmoI	CTYRAG	3 cut(s)	941, 974, 995
Sse9I	AATT	3 cut(s)	242, 510, 842
SsiI	CCGC	2 cut(s)	232, 339
SspMI	CTAG	2 cut(s)	497, 618
StyD4I	CCNGG	4 cut(s)	173, 374, 375, 456
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	1 cut(s)	874
TaiI	ACGT	2 cut(s)	255, 579
TaqI	TCGA	2 cut(s)	915, 942
TasI	AATT	3 cut(s)	242, 510, 842
TatI	WGTACW	2 cut(s)	348, 591
TfiI	GAWTC	2 cut(s)	56, 847
Tru1I	TTAA	1 cut(s)	840
Tru9I	TTAA	1 cut(s)	840
TseI	GCWGC	2 cut(s)	293, 737
TspDTI	ATGAA	3 cut(s)	121, 689, 921
TspGWI	ACGGA	1 cut(s)	534
TspMI	CCCGGG	1 cut(s)	375
Van91I	CCANNNNNTGG	1 cut(s)	606
VneI	GTGCAC	1 cut(s)	448
XceI	RCATGY	1 cut(s)	697
XhoI	CTCGAG	1 cut(s)	941
XmaI	CCCGGG	1 cut(s)	375
XmiI	GTMKAC	1 cut(s)	366
XspI	CTAG	2 cut(s)	497, 618
ZraI	GACGTC	1 cut(s)	253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.